Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48501 * 109.46740 * 269.99345 * 3 2 1 5 5 H 1.48495 * 109.47066 * 29.99254 * 3 2 1 6 6 H 1.48500 * 109.47374 * 149.99728 * 3 2 1 7 7 C 1.38803 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99666 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99887 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00247 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00303 * 179.72743 * 13 11 10 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46988 * 65.00448 * 15 14 13 17 17 N 1.46901 * 109.47424 * 305.00072 * 15 14 13 18 18 C 1.46902 * 110.99932 * 301.04864 * 17 15 14 19 19 C 1.50699 * 109.46833 * 184.47459 * 18 17 15 20 20 C 1.38424 * 122.53921 * 90.00437 * 19 18 17 21 21 C 1.33387 * 114.92003 * 179.97438 * 20 19 18 22 22 S 1.75881 * 109.59403 * 0.02562 * 21 20 19 23 23 C 1.33390 * 122.53715 * 269.70530 * 19 18 17 24 24 C 1.53004 * 109.47001 * 185.00044 * 15 14 13 25 25 C 1.53008 * 117.49865 * 253.78813 * 24 15 14 26 26 C 1.52999 * 117.49651 * 185.13130 * 24 15 14 27 27 H 0.96999 * 119.99912 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46987 * 60.00518 * 10 9 7 29 29 H 1.09000 * 109.47359 * 299.99965 * 10 9 7 30 30 H 0.97008 * 119.99752 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47162 * 300.00326 * 14 13 11 32 32 H 1.09003 * 109.47100 * 60.00010 * 14 13 11 33 33 H 1.00899 * 110.99723 * 65.00805 * 17 15 14 34 34 H 1.09000 * 109.47124 * 304.47881 * 18 17 15 35 35 H 1.09003 * 109.46939 * 64.47572 * 18 17 15 36 36 H 1.08005 * 122.53715 * 359.97438 * 20 19 18 37 37 H 1.08002 * 125.19998 * 180.02562 * 21 20 19 38 38 H 1.08001 * 125.20570 * 0.04046 * 23 19 18 39 39 H 1.08994 * 115.55389 * 39.45975 * 24 15 14 40 40 H 1.09004 * 117.49597 * 0.02562 * 25 24 15 41 41 H 1.08994 * 117.49648 * 145.01871 * 25 24 15 42 42 H 1.09008 * 117.49560 * 214.97869 * 26 24 15 43 43 H 1.08999 * 117.50399 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3441 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0001 14 6 7.4907 -4.7358 -0.0061 15 6 7.7564 -6.2426 -0.0050 16 1 7.3876 -6.6772 -0.9341 17 7 7.0642 -6.8611 1.1336 18 6 7.5189 -6.2810 2.4044 19 6 6.8707 -7.0131 3.5511 20 6 7.4425 -8.1267 4.1418 21 6 6.7390 -8.6547 5.1445 22 16 5.2667 -7.7234 5.3864 23 6 5.7054 -6.6335 4.0775 24 6 9.2607 -6.4951 0.1144 25 6 9.9994 -6.9676 -1.1395 26 6 9.7442 -7.9430 0.0123 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4314 -0.8894 29 1 3.6433 -3.4318 0.8906 30 1 5.4290 -5.2436 -0.0007 31 1 7.9297 -4.2897 -0.8984 32 1 7.9376 -4.2878 0.8815 33 1 6.0633 -6.7790 1.0362 34 1 8.6023 -6.3745 2.4794 35 1 7.2416 -5.2275 2.4427 36 1 8.3868 -8.5370 3.8155 37 1 7.0291 -9.5215 5.7198 38 1 5.1194 -5.7880 3.7486 39 1 9.7962 -5.8325 0.7942 40 1 9.4137 -7.0981 -2.0495 41 1 11.0209 -6.6160 -1.2842 42 1 10.5981 -8.2329 0.6248 43 1 8.9906 -8.7158 -0.1395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713862292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = 23.959249 kcal Electronic energy + Delta-G solvation = -24145.347732 eV Core-core repulsion = 20637.263977 eV Total energy + Delta-G solvation = -3508.083755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98911 -38.80652 -37.97547 -35.60919 -33.63387 -32.46643 -30.73443 -29.65835 -28.05352 -26.13898 -25.63030 -23.52034 -22.94081 -22.55524 -20.58654 -20.00844 -18.94568 -18.02705 -17.92793 -16.61649 -16.44467 -16.17907 -15.67075 -15.47294 -15.22762 -15.00446 -14.48674 -14.19960 -13.90798 -13.75869 -13.29794 -13.21018 -12.95819 -12.86281 -12.79833 -12.60389 -12.12983 -12.07366 -11.79709 -11.70839 -11.31391 -11.27869 -11.03358 -10.88793 -10.68320 -10.56469 -10.50777 -9.88707 -9.59998 -9.10831 -9.04991 -9.01818 -8.78011 -8.56350 -8.53980 -6.95565 -6.31662 -4.03851 0.80756 1.47515 1.80494 2.44722 2.70158 2.90130 3.21654 3.31021 3.46038 3.48120 3.61579 4.09270 4.28316 4.30495 4.49269 4.63704 4.68690 4.72269 4.79743 4.89181 4.96040 5.07410 5.11162 5.12541 5.19221 5.24914 5.37845 5.40126 5.43936 5.57379 5.65808 5.70377 5.71210 5.81330 5.85784 5.94591 5.95056 6.19122 6.26766 6.38098 6.63035 6.99272 7.47536 7.91364 8.38639 8.40631 9.14442 10.77580 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.002818 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.357571 B = 9931.983733 C =12198.448397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.738 5.738 14 C 0.088 3.912 15 C 0.109 3.891 16 H 0.092 0.908 17 N -0.669 5.669 18 C 0.113 3.887 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.220 4.220 22 S 0.094 5.906 23 C -0.204 4.204 24 C -0.147 4.147 25 C -0.178 4.178 26 C -0.157 4.157 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.395 0.605 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.341 0.659 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.134 -20.930 5.507 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.038 4.038 15 C -0.001 4.001 16 H 0.110 0.890 17 N -0.300 5.300 18 C -0.018 4.018 19 C -0.110 4.110 20 C -0.145 4.145 21 C -0.356 4.356 22 S 0.358 5.642 23 C -0.341 4.341 24 C -0.166 4.166 25 C -0.216 4.216 26 C -0.194 4.194 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.229 0.771 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.438 -19.907 6.571 27.918 hybrid contribution -0.428 0.307 -0.984 1.116 sum 18.010 -19.601 5.586 27.198 Atomic orbital electron populations 1.69936 1.05917 1.27803 1.47980 1.24713 0.94450 0.98967 0.93156 0.86738 0.81881 0.83295 0.79958 1.19184 1.19902 1.15946 1.22309 0.88224 0.97536 1.58888 0.89391 1.84806 1.09332 0.99872 1.97423 1.23277 0.93915 1.04557 1.05753 1.20284 0.90602 0.82195 0.75214 1.90710 1.58788 1.42126 1.47416 1.45955 1.07306 1.08069 1.78044 1.21984 0.81669 0.97047 1.03106 1.21400 0.93062 0.90993 0.94674 0.89042 1.60673 1.10115 1.58519 1.00658 1.20636 0.99790 0.95299 0.86085 1.18813 0.95419 0.97582 0.99178 1.20021 1.01629 0.96409 0.96436 1.25590 0.99290 1.05958 1.04716 1.84385 1.22399 1.22953 1.34491 1.25604 1.01211 1.05283 1.01958 1.22062 0.93722 0.98920 1.01860 1.23025 1.01363 1.04312 0.92893 1.22802 1.02731 0.92585 1.01296 0.91904 0.88492 0.88569 0.77062 0.90957 0.91263 0.84003 0.89698 0.93515 0.84351 0.82100 0.81902 0.87827 0.88704 0.88781 0.89161 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.06 7.85 -10.99 -0.09 8.97 16 12 O -0.52 -10.91 15.86 5.55 0.09 -10.82 16 13 N -0.74 -8.63 5.35 -60.30 -0.32 -8.95 16 14 C 0.09 0.91 4.61 -4.04 -0.02 0.89 16 15 C 0.11 0.83 2.88 -67.71 -0.19 0.63 16 16 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 17 N -0.67 -5.12 6.30 -107.99 -0.68 -5.80 16 18 C 0.11 0.96 5.18 -4.98 -0.03 0.93 16 19 C -0.10 -0.89 5.35 -106.25 -0.57 -1.45 16 20 C -0.11 -0.97 9.98 -41.21 -0.41 -1.38 16 21 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 22 S 0.09 0.84 23.34 -107.50 -2.51 -1.67 16 23 C -0.20 -1.97 10.98 29.04 0.32 -1.65 16 24 C -0.15 -1.04 4.00 -90.61 -0.36 -1.40 16 25 C -0.18 -1.16 10.18 -26.69 -0.27 -1.43 16 26 C -0.16 -1.02 10.21 -26.69 -0.27 -1.29 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.39 3.58 7.18 -40.82 -0.29 3.28 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 33 H 0.34 2.59 7.35 -39.29 -0.29 2.30 16 34 H 0.08 0.69 6.68 -51.93 -0.35 0.34 16 35 H 0.05 0.47 6.63 -51.93 -0.34 0.12 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.10 0.76 7.70 -51.93 -0.40 0.36 16 40 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -33.15 383.90 -10.94 -44.09 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.24 Total: 4.25 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.13 Total: -12.67 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.23 Total: -40.44 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -4.50 Total: -7.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.15 -10.94 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.054 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds