Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48501 * 109.46740 * 269.99345 * 3 2 1 5 5 H 1.48495 * 109.47066 * 29.99254 * 3 2 1 6 6 H 1.48500 * 109.47374 * 149.99728 * 3 2 1 7 7 C 1.38803 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99666 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99887 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00247 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00303 * 179.72743 * 13 11 10 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46988 * 65.00448 * 15 14 13 17 17 N 1.46901 * 109.47424 * 305.00072 * 15 14 13 18 18 C 1.46902 * 110.99932 * 301.04864 * 17 15 14 19 19 C 1.50699 * 109.46833 * 184.47459 * 18 17 15 20 20 C 1.38424 * 122.53921 * 90.00437 * 19 18 17 21 21 C 1.33387 * 114.92003 * 179.97438 * 20 19 18 22 22 S 1.75881 * 109.59403 * 0.02562 * 21 20 19 23 23 C 1.33390 * 122.53715 * 269.70530 * 19 18 17 24 24 C 1.53004 * 109.47001 * 185.00044 * 15 14 13 25 25 C 1.53008 * 117.49865 * 253.78813 * 24 15 14 26 26 C 1.52999 * 117.49651 * 185.13130 * 24 15 14 27 27 H 0.96999 * 119.99912 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46987 * 60.00518 * 10 9 7 29 29 H 1.09000 * 109.47359 * 299.99965 * 10 9 7 30 30 H 0.97008 * 119.99752 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47162 * 300.00326 * 14 13 11 32 32 H 1.09003 * 109.47100 * 60.00010 * 14 13 11 33 33 H 1.00899 * 110.99723 * 65.00805 * 17 15 14 34 34 H 1.09000 * 109.47124 * 304.47881 * 18 17 15 35 35 H 1.09003 * 109.46939 * 64.47572 * 18 17 15 36 36 H 1.08005 * 122.53715 * 359.97438 * 20 19 18 37 37 H 1.08002 * 125.19998 * 180.02562 * 21 20 19 38 38 H 1.08001 * 125.20570 * 0.04046 * 23 19 18 39 39 H 1.08994 * 115.55389 * 39.45975 * 24 15 14 40 40 H 1.09004 * 117.49597 * 0.02562 * 25 24 15 41 41 H 1.08994 * 117.49648 * 145.01871 * 25 24 15 42 42 H 1.09008 * 117.49560 * 214.97869 * 26 24 15 43 43 H 1.08999 * 117.50399 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3441 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0001 14 6 7.4907 -4.7358 -0.0061 15 6 7.7564 -6.2426 -0.0050 16 1 7.3876 -6.6772 -0.9341 17 7 7.0642 -6.8611 1.1336 18 6 7.5189 -6.2810 2.4044 19 6 6.8707 -7.0131 3.5511 20 6 7.4425 -8.1267 4.1418 21 6 6.7390 -8.6547 5.1445 22 16 5.2667 -7.7234 5.3864 23 6 5.7054 -6.6335 4.0775 24 6 9.2607 -6.4951 0.1144 25 6 9.9994 -6.9676 -1.1395 26 6 9.7442 -7.9430 0.0123 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4314 -0.8894 29 1 3.6433 -3.4318 0.8906 30 1 5.4290 -5.2436 -0.0007 31 1 7.9297 -4.2897 -0.8984 32 1 7.9376 -4.2878 0.8815 33 1 6.0633 -6.7790 1.0362 34 1 8.6023 -6.3745 2.4794 35 1 7.2416 -5.2275 2.4427 36 1 8.3868 -8.5370 3.8155 37 1 7.0291 -9.5215 5.7198 38 1 5.1194 -5.7880 3.7486 39 1 9.7962 -5.8325 0.7942 40 1 9.4137 -7.0981 -2.0495 41 1 11.0209 -6.6160 -1.2842 42 1 10.5981 -8.2329 0.6248 43 1 8.9906 -8.7158 -0.1395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713862292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = 1.930302 kcal Electronic energy + Delta-G solvation = -24146.302978 eV Core-core repulsion = 20637.263977 eV Total energy + Delta-G solvation = -3509.039002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02442 -39.78058 -38.64609 -36.41434 -34.70552 -34.61263 -31.77219 -30.67374 -28.96919 -27.87033 -26.86589 -24.30875 -23.61330 -23.05868 -21.80326 -20.73587 -19.91207 -19.60722 -18.65458 -18.00096 -17.41325 -17.20273 -17.07574 -16.54461 -16.34700 -15.98708 -15.76782 -15.35272 -15.07818 -14.88373 -14.59485 -14.40844 -13.96309 -13.77995 -13.58482 -13.52419 -13.36116 -13.12574 -13.01677 -12.83493 -12.64051 -12.53869 -12.25505 -11.94282 -11.87950 -11.56260 -11.21735 -11.18992 -11.06768 -10.94835 -10.56049 -10.23486 -9.72945 -9.47089 -9.25970 -9.01938 -8.53403 -6.24347 0.12788 0.80003 0.96259 1.13632 1.29722 1.44627 1.51230 1.53235 1.78399 2.14887 2.23501 2.68373 2.84972 2.91022 3.46180 3.61046 3.75553 3.90675 4.00212 4.13223 4.15568 4.19068 4.24339 4.32349 4.42844 4.47121 4.52311 4.56410 4.60947 4.73573 4.87572 4.92267 4.92894 5.15731 5.16125 5.28455 5.34989 5.42522 5.53312 5.59696 5.68920 5.93302 6.09705 6.31449 6.37240 6.91861 7.11983 8.59065 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.002818 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.357571 B = 9931.983733 C =12198.448397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.112 4.112 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.711 5.711 14 C 0.090 3.910 15 C 0.123 3.877 16 H 0.102 0.898 17 N -0.662 5.662 18 C 0.119 3.881 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.215 4.215 22 S 0.081 5.919 23 C -0.224 4.224 24 C -0.154 4.154 25 C -0.177 4.177 26 C -0.150 4.150 27 H 0.277 0.723 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.411 0.589 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.342 0.658 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.154 0.846 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.892 -22.490 5.443 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.438 6.438 13 N -0.366 5.366 14 C -0.035 4.035 15 C 0.012 3.988 16 H 0.120 0.880 17 N -0.293 5.293 18 C -0.012 4.012 19 C -0.110 4.110 20 C -0.154 4.154 21 C -0.350 4.350 22 S 0.345 5.655 23 C -0.361 4.361 24 C -0.174 4.174 25 C -0.215 4.215 26 C -0.187 4.187 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.249 0.751 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.172 0.828 37 H 0.201 0.799 38 H 0.177 0.823 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.189 -21.528 6.508 30.223 hybrid contribution -0.930 0.597 -0.953 1.459 sum 19.258 -20.932 5.555 28.981 Atomic orbital electron populations 1.70014 1.07307 1.29044 1.49130 1.25560 0.95261 1.02247 0.92901 0.85876 0.80668 0.79654 0.80235 1.18665 1.18347 1.16094 1.22454 0.90233 0.96672 1.58254 0.91943 1.84728 1.06430 1.06075 1.97583 1.23267 0.95841 0.99734 1.07419 1.19932 0.89359 0.83293 0.75194 1.90701 1.59331 1.43801 1.50007 1.45682 1.08559 1.06743 1.75614 1.22107 0.80013 0.99092 1.02299 1.21334 0.93736 0.88697 0.95013 0.88006 1.60687 1.10232 1.58033 1.00350 1.20557 1.00091 0.94242 0.86278 1.18958 0.95157 0.97742 0.99175 1.20208 1.02328 0.96295 0.96599 1.25897 0.98360 1.06175 1.04530 1.84417 1.23352 1.23273 1.34487 1.25669 1.01830 1.05768 1.02784 1.22022 0.93118 0.99622 1.02594 1.23091 1.01591 1.03989 0.92789 1.22808 1.02760 0.91917 1.01185 0.91344 0.86847 0.86899 0.75130 0.91681 0.92213 0.83844 0.89044 0.95168 0.82813 0.79899 0.82345 0.88068 0.88428 0.88292 0.88429 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.78 13.97 21.65 0.30 -55.48 16 2 C 0.05 2.68 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.64 6.74 99.48 0.67 -10.96 16 7 C -0.53 -30.59 10.04 67.96 0.68 -29.90 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -8.74 18.55 -56.49 -1.05 -9.79 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.54 17.71 7.85 87.66 0.69 18.40 16 12 O -0.56 -23.46 15.86 -3.05 -0.05 -23.51 16 13 N -0.71 -15.42 5.35 -463.06 -2.48 -17.89 16 14 C 0.09 1.73 4.61 86.38 0.40 2.13 16 15 C 0.12 1.59 2.88 44.92 0.13 1.72 16 16 H 0.10 1.20 7.94 -2.38 -0.02 1.18 16 17 N -0.66 -8.77 6.30 -495.56 -3.12 -11.89 16 18 C 0.12 1.85 5.18 85.56 0.44 2.29 16 19 C -0.10 -1.65 5.35 -20.92 -0.11 -1.76 16 20 C -0.12 -1.86 9.98 21.22 0.21 -1.65 16 21 C -0.21 -3.07 11.23 66.72 0.75 -2.32 16 22 S 0.08 1.39 23.34 -56.49 -1.32 0.07 16 23 C -0.22 -4.19 10.98 66.72 0.73 -3.46 16 24 C -0.15 -1.85 4.00 -10.79 -0.04 -1.90 16 25 C -0.18 -1.89 10.18 30.62 0.31 -1.58 16 26 C -0.15 -1.56 10.21 30.62 0.31 -1.25 16 27 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 29 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 30 H 0.41 6.46 7.18 -92.70 -0.67 5.79 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.32 6.77 -2.39 -0.02 1.30 16 33 H 0.34 4.45 7.35 -89.69 -0.66 3.79 16 34 H 0.09 1.31 6.68 -2.39 -0.02 1.30 16 35 H 0.03 0.58 6.63 -2.39 -0.02 0.56 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.10 1.30 7.70 -2.39 -0.02 1.28 16 40 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.76 383.90 -0.73 -72.49 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.33 Total: 18.93 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.41 Total: -19.76 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -5.30 Total: -85.26 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -2.37 Total: -9.72 kcal Total: -71.76 -0.73 -72.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713862292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.421 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds