Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48495 * 109.47495 * 270.00066 * 3 2 1 5 5 H 1.48496 * 109.47323 * 30.00039 * 3 2 1 6 6 H 1.48503 * 109.46873 * 150.00070 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 13 18 18 C 1.38240 * 120.00399 * 264.71962 * 17 16 14 19 19 C 1.38224 * 120.04722 * 179.76481 * 18 17 16 20 20 C 1.38257 * 120.05854 * 0.51581 * 19 18 17 21 21 C 1.38279 * 120.01728 * 359.74253 * 20 19 18 22 22 Cl 1.73599 * 120.02671 * 179.97438 * 21 20 19 23 23 C 1.38401 * 120.00644 * 84.99818 * 17 16 14 24 24 F 1.35095 * 120.03047 * 359.97438 * 23 17 16 25 25 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 26 26 C 1.52995 * 117.49555 * 128.74822 * 25 10 9 27 27 C 1.52995 * 117.49792 * 60.09061 * 25 10 9 28 28 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 31 31 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 33 33 H 1.09002 * 109.47152 * 300.00160 * 16 14 13 34 34 H 1.09001 * 109.46980 * 60.00059 * 16 14 13 35 35 H 1.08002 * 119.97398 * 0.02562 * 18 17 16 36 36 H 1.08003 * 119.96812 * 180.25254 * 19 18 17 37 37 H 1.08000 * 119.98939 * 179.76187 * 20 19 18 38 38 H 1.08997 * 115.54853 * 274.41548 * 25 10 9 39 39 H 1.08998 * 117.49984 * 359.97438 * 26 25 10 40 40 H 1.09006 * 117.49830 * 145.02021 * 26 25 10 41 41 H 1.09000 * 117.49832 * 214.98051 * 27 25 10 42 42 H 1.09001 * 117.49910 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2234 2.2267 16 6 -0.5143 -4.7190 4.0412 17 6 -1.3772 -5.7985 4.6422 18 6 -2.7529 -5.7284 4.5262 19 6 -3.5450 -6.7206 5.0728 20 6 -2.9633 -7.7790 5.7457 21 6 -1.5877 -7.8489 5.8679 22 17 -0.8570 -9.1774 6.7134 23 6 -0.7927 -6.8571 5.3153 24 9 0.5514 -6.9237 5.4336 25 6 2.4221 -4.0355 -1.4376 26 6 3.8823 -4.3890 -1.7268 27 6 3.3029 -3.0621 -2.2233 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3880 -0.0005 30 1 0.3135 -4.9201 -0.0291 31 1 1.7560 -5.6746 0.6908 32 1 1.0066 -3.4751 2.2963 33 1 0.3531 -4.5502 4.6794 34 1 -1.0898 -3.7969 3.9590 35 1 -3.2090 -4.9001 4.0043 36 1 -4.6195 -6.6667 4.9779 37 1 -3.5834 -8.5516 6.1758 38 1 1.6542 -4.5774 -1.9897 39 1 4.5838 -4.3513 -0.8934 40 1 4.0751 -5.1632 -2.4696 41 1 3.1147 -2.9637 -3.2924 42 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713877789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -47.854866 kcal Electronic energy + Delta-G solvation = -26536.685422 eV Core-core repulsion = 22457.230691 eV Total energy + Delta-G solvation = -4079.454731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05095 -41.01541 -39.89050 -38.95560 -37.60948 -36.08426 -35.12482 -33.98058 -32.66773 -31.42216 -30.11043 -28.43307 -25.56893 -24.14886 -23.83873 -23.04662 -22.88086 -21.55441 -20.87284 -19.28095 -18.76759 -18.05930 -17.86391 -17.42894 -16.85810 -16.75660 -16.63177 -16.23574 -15.99449 -15.47144 -15.43719 -15.15642 -14.90561 -14.49320 -14.41818 -14.31985 -13.98030 -13.83141 -13.34347 -12.98512 -12.88273 -12.69853 -12.61423 -12.49311 -12.41834 -12.40688 -12.24973 -11.97835 -11.95864 -11.71796 -11.12518 -10.99707 -10.84843 -10.75541 -10.00844 -9.86514 -9.71161 -8.97807 -7.86951 -5.14083 -0.03691 0.01820 0.94618 1.50567 1.52835 1.58855 1.65282 2.18603 2.55474 2.60355 3.05958 3.08271 3.39827 3.49824 3.79545 3.80692 3.92967 4.00516 4.02629 4.16539 4.18503 4.28325 4.36414 4.39907 4.51327 4.57206 4.66509 4.68109 4.87022 4.89965 4.91298 4.94675 5.16118 5.16571 5.17586 5.30755 5.40182 5.47644 5.54510 5.63520 5.70139 6.33022 6.60309 7.25666 7.41790 8.11863 8.38330 9.35674 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002565 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.853875 B =10914.037593 C =11945.555480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.957 3.043 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.217 4.217 8 H 0.075 0.925 9 N -0.721 5.721 10 C 0.198 3.802 11 H 0.056 0.944 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.512 3.488 15 O -0.581 6.581 16 C -0.101 4.101 17 C -0.098 4.098 18 C -0.081 4.081 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.088 4.088 22 Cl -0.058 7.058 23 C 0.094 3.906 24 F -0.140 7.140 25 C -0.173 4.173 26 C -0.164 4.164 27 C -0.173 4.173 28 H 0.248 0.752 29 H 0.374 0.626 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.168 0.832 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -14.262 11.515 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.788 3.212 4 H -0.224 1.224 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.089 3.911 11 H 0.074 0.926 12 C 0.004 3.996 13 N -0.361 5.361 14 C 0.300 3.700 15 O -0.462 6.462 16 C -0.140 4.140 17 C -0.099 4.099 18 C -0.099 4.099 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.116 4.116 22 Cl -0.029 7.029 23 C 0.074 3.926 24 F -0.119 7.119 25 C -0.195 4.195 26 C -0.202 4.202 27 C -0.210 4.210 28 H 0.057 0.943 29 H 0.206 0.794 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.193 0.807 37 H 0.186 0.814 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.280 -15.006 11.302 19.268 hybrid contribution 0.642 1.389 -0.163 1.539 sum -3.638 -13.617 11.140 17.965 Atomic orbital electron populations 1.69787 1.06245 1.25582 1.59925 1.25314 0.96069 1.00204 1.04424 0.85377 0.77952 0.80901 0.76936 1.22427 1.22742 1.19566 1.19420 0.91065 0.84599 1.39837 0.90708 1.42528 1.05323 1.00228 1.88023 1.20123 0.94044 0.84787 0.92115 0.92580 1.21432 0.97864 0.97239 0.83046 1.45945 1.50650 1.21882 1.17645 1.20839 0.77784 0.83931 0.87476 1.90670 1.58065 1.24012 1.73456 1.20649 1.01700 0.98978 0.92667 1.19500 0.95710 0.95336 0.99371 1.21433 0.91116 1.00205 0.97100 1.21575 1.02326 0.92372 0.96182 1.21349 0.90779 0.99865 0.98192 1.21167 0.94746 0.91996 1.03665 1.98371 1.83455 1.45178 1.75896 1.17520 0.76998 0.96473 1.01591 1.91474 1.29903 1.96174 1.94307 1.22937 0.93896 1.03866 0.98787 1.23030 0.95249 0.98393 1.03485 1.22733 1.04723 0.94249 0.99295 0.94344 0.79372 0.93023 0.90848 0.75102 0.86449 0.84638 0.82529 0.80731 0.81433 0.88887 0.88672 0.87629 0.89595 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.75 13.06 21.65 0.28 -54.47 16 2 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.96 43.51 29.55 68.60 2.03 45.54 16 4 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.22 -10.69 8.63 84.03 0.73 -9.96 16 8 H 0.08 3.58 6.91 -2.91 -0.02 3.56 16 9 N -0.72 -31.79 4.54 -322.94 -1.47 -33.26 16 10 C 0.20 7.01 2.70 44.99 0.12 7.13 16 11 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 12 C 0.13 4.24 5.22 86.38 0.45 4.69 16 13 N -0.71 -22.30 5.39 -463.05 -2.49 -24.79 16 14 C 0.51 16.02 7.82 87.66 0.69 16.70 16 15 O -0.58 -22.13 16.03 -3.02 -0.05 -22.18 16 16 C -0.10 -2.37 5.61 29.10 0.16 -2.20 16 17 C -0.10 -2.33 4.38 -19.82 -0.09 -2.41 16 18 C -0.08 -1.50 9.68 22.27 0.22 -1.29 16 19 C -0.11 -1.55 10.04 22.27 0.22 -1.32 16 20 C -0.08 -1.36 9.83 22.28 0.22 -1.14 16 21 C -0.09 -1.98 6.33 22.36 0.14 -1.84 16 22 Cl -0.06 -1.25 28.62 -2.72 -0.08 -1.33 16 23 C 0.09 2.47 7.22 22.39 0.16 2.63 16 24 F -0.14 -4.11 16.14 44.97 0.73 -3.38 16 25 C -0.17 -5.71 5.36 -10.79 -0.06 -5.77 16 26 C -0.16 -4.49 10.18 30.61 0.31 -4.18 16 27 C -0.17 -5.81 9.78 30.61 0.30 -5.51 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.37 18.25 7.80 -92.71 -0.72 17.52 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.41 12.82 8.14 -92.71 -0.75 12.06 16 33 H 0.12 2.48 7.79 -2.39 -0.02 2.46 16 34 H 0.14 2.58 8.05 -2.39 -0.02 2.57 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.09 3.03 8.11 -2.39 -0.02 3.01 16 39 H 0.09 2.47 8.05 -2.39 -0.02 2.45 16 40 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 42 H 0.08 3.13 6.23 -2.39 -0.01 3.11 16 Total: -1.00 -64.80 376.88 2.58 -62.21 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.41 Total: 39.23 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.04 Total: -7.57 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.68 Total: -112.52 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.73 Total: -3.38 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -64.80 2.58 -62.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713877789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.359 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds