Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00557 * 2 1 4 4 H 1.48497 * 109.46785 * 270.00143 * 3 2 1 5 5 H 1.48496 * 109.46767 * 29.99809 * 3 2 1 6 6 H 1.48490 * 109.47472 * 149.99929 * 3 2 1 7 7 C 1.38810 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00039 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00344 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00487 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47533 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.49220 * 55.06693 * 11 10 9 13 13 C 1.53041 * 109.52667 * 175.14541 * 11 10 9 14 14 C 1.53040 * 109.54016 * 181.33935 * 13 11 10 15 15 C 1.53631 * 109.23700 * 298.51081 * 14 13 11 16 16 N 1.46926 * 108.54284 * 54.85659 * 15 14 13 17 17 C 1.34773 * 120.62789 * 126.37282 * 16 15 14 18 18 O 1.21568 * 119.99918 * 185.52191 * 17 16 15 19 19 C 1.47692 * 120.00351 * 5.51396 * 17 16 15 20 20 C 1.39680 * 120.15903 * 53.85590 * 19 17 16 21 21 C 1.37847 * 119.90100 * 180.02562 * 20 19 17 22 22 C 1.38455 * 120.23289 * 359.72886 * 21 20 19 23 23 C 1.38294 * 120.32577 * 0.55175 * 22 21 20 24 24 Cl 1.73599 * 119.95454 * 179.72080 * 23 22 21 25 25 C 1.38438 * 120.09213 * 359.44862 * 23 22 21 26 26 F 1.35103 * 120.11662 * 180.25518 * 25 23 22 27 27 C 1.46921 * 118.73773 * 306.09334 * 16 15 14 28 28 H 0.97000 * 119.99234 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00209 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.47087 * 60.00023 * 10 9 7 31 31 H 1.08997 * 109.47205 * 300.00289 * 10 9 7 32 32 H 1.09008 * 109.46064 * 301.35367 * 13 11 10 33 33 H 1.08994 * 109.45842 * 61.32474 * 13 11 10 34 34 H 1.09000 * 109.50009 * 58.58207 * 14 13 11 35 35 H 1.08999 * 109.50050 * 178.65420 * 14 13 11 36 36 H 1.09003 * 109.73777 * 295.11663 * 15 14 13 37 37 H 1.09004 * 109.66181 * 174.55121 * 15 14 13 38 38 H 1.07996 * 120.04789 * 0.04801 * 20 19 17 39 39 H 1.08004 * 119.87878 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.83503 * 180.29252 * 22 21 20 41 41 H 1.09004 * 109.58822 * 173.65229 * 27 16 15 42 42 H 1.09003 * 109.58869 * 293.92578 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 -0.0013 12 1 5.8670 -1.5463 0.8407 13 6 6.3818 -3.5111 0.1208 14 6 7.8856 -3.2294 0.1531 15 6 8.3015 -2.5492 -1.1601 16 7 7.4681 -1.3545 -1.3519 17 6 8.0335 -0.1502 -1.5673 18 8 7.3389 0.8459 -1.6244 19 6 9.4969 -0.0405 -1.7339 20 6 10.1546 -0.8180 -2.6899 21 6 11.5207 -0.7117 -2.8405 22 6 12.2428 0.1672 -2.0511 23 6 11.6021 0.9372 -1.0977 24 17 12.5180 2.0308 -0.1082 25 6 10.2307 0.8414 -0.9350 26 9 9.6036 1.5972 -0.0072 27 6 6.0065 -1.4987 -1.3105 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3623 -0.0011 30 1 3.8483 -3.0428 -0.8898 31 1 3.8490 -3.0424 0.8902 32 1 6.0875 -4.0180 1.0399 33 1 6.1497 -4.1460 -0.7343 34 1 8.1151 -2.5743 0.9935 35 1 8.4293 -4.1676 0.2641 36 1 8.1531 -3.2359 -1.9935 37 1 9.3506 -2.2581 -1.1062 38 1 9.5936 -1.5010 -3.3105 39 1 12.0288 -1.3127 -3.5801 40 1 13.3122 0.2487 -2.1778 41 1 5.5407 -0.5143 -1.3560 42 1 5.6745 -2.0993 -2.1574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714078133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -45.002375 kcal Electronic energy + Delta-G solvation = -27424.282678 eV Core-core repulsion = 23344.951640 eV Total energy + Delta-G solvation = -4079.331037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.30721 -40.73788 -39.13671 -37.70384 -36.96826 -35.15177 -33.15250 -31.88308 -31.64559 -31.02589 -30.13476 -26.23942 -25.78785 -23.93967 -23.29852 -22.90898 -21.33896 -20.62635 -19.59534 -18.15487 -17.77900 -17.35062 -17.17382 -16.54334 -15.94845 -15.74472 -15.14193 -15.10674 -14.72481 -14.67937 -14.19627 -13.93998 -13.76227 -13.58312 -13.48788 -13.12927 -13.05435 -12.79270 -12.61491 -12.45616 -12.12241 -12.08080 -11.64775 -11.52276 -11.42110 -11.22447 -10.91802 -10.72381 -10.51675 -10.31416 -10.11457 -9.99210 -9.53265 -9.48691 -9.25464 -8.86204 -8.72243 -7.19060 -5.72451 -3.08076 0.21798 0.40980 1.45890 2.36010 2.68370 2.96461 3.47573 3.52418 3.52887 3.56434 3.94278 4.22308 4.30134 4.49846 4.57061 4.66379 4.75098 4.75481 4.86960 5.03687 5.14810 5.21873 5.26130 5.29750 5.44717 5.46120 5.56991 5.58822 5.62496 5.69199 5.77879 5.85500 5.96910 5.99922 6.01068 6.25114 6.30272 6.41484 6.65331 6.74675 7.19692 7.94306 8.02964 8.46641 9.25632 9.98632 10.17624 11.45755 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.003164 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.433274 B = 8846.139429 C =10009.639422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.166 3.834 11 C -0.112 4.112 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.102 3.898 16 N -0.602 5.602 17 C 0.557 3.443 18 O -0.513 6.513 19 C -0.145 4.145 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.066 4.066 23 C -0.081 4.081 24 Cl -0.042 7.042 25 C 0.155 3.845 26 F -0.110 7.110 27 C 0.118 3.882 28 H 0.259 0.741 29 H 0.362 0.638 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.098 0.902 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.559 -6.866 -5.333 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.132 4.132 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.335 5.335 17 C 0.343 3.657 18 O -0.389 6.389 19 C -0.149 4.149 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.085 4.085 23 C -0.108 4.108 24 Cl -0.013 7.013 25 C 0.134 3.866 26 F -0.088 7.088 27 C -0.003 4.003 28 H 0.069 0.931 29 H 0.195 0.805 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.116 0.884 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 30.971 -6.272 -5.230 32.030 hybrid contribution 0.536 1.484 0.321 1.610 sum 31.508 -4.788 -4.910 32.245 Atomic orbital electron populations 1.69706 1.05105 1.25841 1.57592 1.24648 0.95210 0.97194 1.01872 0.86609 0.79264 0.84929 0.78153 1.20850 1.21682 1.20214 1.19032 0.80597 0.94685 1.43171 0.89197 1.42784 1.04142 1.02250 1.91162 1.20608 0.87223 0.89467 0.98916 1.21755 0.97035 0.96746 0.97645 0.90725 1.21514 0.93619 0.97122 1.02719 1.21993 0.97305 1.00683 0.97221 1.22000 0.94862 0.86821 0.98385 1.48087 1.08005 1.07004 1.70370 1.17964 0.86410 0.83673 0.77682 1.90894 1.62984 1.35636 1.49341 1.20028 0.94716 0.99963 1.00205 1.21334 0.94626 0.96232 0.95312 1.21140 0.93534 0.99186 1.00130 1.21160 1.01193 0.93525 0.92577 1.20916 0.90387 0.99859 0.99671 1.98409 1.72803 1.61695 1.68428 1.17346 0.88565 0.91545 0.89175 1.91631 1.82116 1.72903 1.62106 1.21810 0.77211 1.03404 0.97855 0.93073 0.80476 0.95308 0.95126 0.91163 0.91427 0.91475 0.90572 0.90782 0.89942 0.83619 0.83516 0.83436 0.88392 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.16 13.97 55.49 0.78 -29.38 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 23.65 27.74 -169.99 -4.71 18.93 16 4 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.28 -7.21 6.52 56.52 0.37 -6.84 16 7 C -0.25 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.76 -18.56 5.18 -59.91 -0.31 -18.87 16 10 C 0.17 3.15 5.66 -4.04 -0.02 3.12 16 11 C -0.11 -1.70 2.37 -90.50 -0.21 -1.91 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.21 5.17 -26.69 -0.14 -1.35 16 14 C -0.13 -1.17 6.10 -26.38 -0.16 -1.33 16 15 C 0.10 0.87 5.59 -3.48 -0.02 0.85 16 16 N -0.60 -7.76 2.97 -173.67 -0.52 -8.27 16 17 C 0.56 8.34 6.89 -12.40 -0.09 8.25 16 18 O -0.51 -10.26 16.27 5.31 0.09 -10.17 16 19 C -0.14 -1.64 4.62 -104.91 -0.48 -2.12 16 20 C -0.06 -0.40 7.76 -39.19 -0.30 -0.70 16 21 C -0.12 -0.60 10.03 -39.64 -0.40 -1.00 16 22 C -0.07 -0.39 9.82 -39.48 -0.39 -0.78 16 23 C -0.08 -0.74 6.32 -39.49 -0.25 -0.99 16 24 Cl -0.04 -0.39 28.61 -51.86 -1.48 -1.88 16 25 C 0.15 1.86 7.24 -38.92 -0.28 1.58 16 26 F -0.11 -1.65 16.22 2.25 0.04 -1.61 16 27 C 0.12 1.82 5.52 -3.72 -0.02 1.80 16 28 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 29 H 0.36 8.98 4.75 -40.82 -0.19 8.79 16 30 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.58 5.37 -51.93 -0.28 0.30 16 38 H 0.15 0.76 7.74 -52.49 -0.41 0.35 16 39 H 0.15 0.26 8.06 -52.48 -0.42 -0.17 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.10 1.88 6.20 -51.93 -0.32 1.56 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -36.27 360.57 -9.16 -45.42 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.44 Total: 2.15 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.02 Total: -1.76 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.05 Total: -56.52 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.71 Total: 18.93 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.27 -9.16 -45.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714078133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.421 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds