Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00557 * 2 1 4 4 H 1.48497 * 109.46785 * 270.00143 * 3 2 1 5 5 H 1.48496 * 109.46767 * 29.99809 * 3 2 1 6 6 H 1.48490 * 109.47472 * 149.99929 * 3 2 1 7 7 C 1.38810 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00039 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00344 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00487 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47533 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.49220 * 55.06693 * 11 10 9 13 13 C 1.53041 * 109.52667 * 175.14541 * 11 10 9 14 14 C 1.53040 * 109.54016 * 181.33935 * 13 11 10 15 15 C 1.53631 * 109.23700 * 298.51081 * 14 13 11 16 16 N 1.46926 * 108.54284 * 54.85659 * 15 14 13 17 17 C 1.34773 * 120.62789 * 126.37282 * 16 15 14 18 18 O 1.21568 * 119.99918 * 185.52191 * 17 16 15 19 19 C 1.47692 * 120.00351 * 5.51396 * 17 16 15 20 20 C 1.39680 * 120.15903 * 53.85590 * 19 17 16 21 21 C 1.37847 * 119.90100 * 180.02562 * 20 19 17 22 22 C 1.38455 * 120.23289 * 359.72886 * 21 20 19 23 23 C 1.38294 * 120.32577 * 0.55175 * 22 21 20 24 24 Cl 1.73599 * 119.95454 * 179.72080 * 23 22 21 25 25 C 1.38438 * 120.09213 * 359.44862 * 23 22 21 26 26 F 1.35103 * 120.11662 * 180.25518 * 25 23 22 27 27 C 1.46921 * 118.73773 * 306.09334 * 16 15 14 28 28 H 0.97000 * 119.99234 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00209 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.47087 * 60.00023 * 10 9 7 31 31 H 1.08997 * 109.47205 * 300.00289 * 10 9 7 32 32 H 1.09008 * 109.46064 * 301.35367 * 13 11 10 33 33 H 1.08994 * 109.45842 * 61.32474 * 13 11 10 34 34 H 1.09000 * 109.50009 * 58.58207 * 14 13 11 35 35 H 1.08999 * 109.50050 * 178.65420 * 14 13 11 36 36 H 1.09003 * 109.73777 * 295.11663 * 15 14 13 37 37 H 1.09004 * 109.66181 * 174.55121 * 15 14 13 38 38 H 1.07996 * 120.04789 * 0.04801 * 20 19 17 39 39 H 1.08004 * 119.87878 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.83503 * 180.29252 * 22 21 20 41 41 H 1.09004 * 109.58822 * 173.65229 * 27 16 15 42 42 H 1.09003 * 109.58869 * 293.92578 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 -0.0013 12 1 5.8670 -1.5463 0.8407 13 6 6.3818 -3.5111 0.1208 14 6 7.8856 -3.2294 0.1531 15 6 8.3015 -2.5492 -1.1601 16 7 7.4681 -1.3545 -1.3519 17 6 8.0335 -0.1502 -1.5673 18 8 7.3389 0.8459 -1.6244 19 6 9.4969 -0.0405 -1.7339 20 6 10.1546 -0.8180 -2.6899 21 6 11.5207 -0.7117 -2.8405 22 6 12.2428 0.1672 -2.0511 23 6 11.6021 0.9372 -1.0977 24 17 12.5180 2.0308 -0.1082 25 6 10.2307 0.8414 -0.9350 26 9 9.6036 1.5972 -0.0072 27 6 6.0065 -1.4987 -1.3105 28 1 -0.4849 0.8401 -0.0004 29 1 3.8647 -0.3623 -0.0011 30 1 3.8483 -3.0428 -0.8898 31 1 3.8490 -3.0424 0.8902 32 1 6.0875 -4.0180 1.0399 33 1 6.1497 -4.1460 -0.7343 34 1 8.1151 -2.5743 0.9935 35 1 8.4293 -4.1676 0.2641 36 1 8.1531 -3.2359 -1.9935 37 1 9.3506 -2.2581 -1.1062 38 1 9.5936 -1.5010 -3.3105 39 1 12.0288 -1.3127 -3.5801 40 1 13.3122 0.2487 -2.1778 41 1 5.5407 -0.5143 -1.3560 42 1 5.6745 -2.0993 -2.1574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714078133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -69.205480 kcal Electronic energy + Delta-G solvation = -27425.332203 eV Core-core repulsion = 23344.951640 eV Total energy + Delta-G solvation = -4080.380563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.23398 -41.69545 -39.88665 -38.85761 -37.65263 -36.80265 -34.62938 -33.34882 -32.56178 -31.66545 -31.59727 -27.61728 -26.92784 -24.70695 -24.62899 -23.85323 -22.67902 -21.83145 -20.56193 -19.71380 -18.89732 -18.45994 -17.97530 -17.50175 -16.90142 -16.72276 -16.56549 -16.16699 -15.91562 -15.69038 -15.59971 -15.17542 -14.98529 -14.54044 -14.46361 -14.27048 -14.17964 -14.10384 -13.84675 -13.44697 -13.34419 -13.09919 -12.89005 -12.72119 -12.56043 -12.26320 -12.22505 -12.07107 -11.93920 -11.87261 -11.63573 -11.43961 -11.13413 -11.05759 -10.17663 -9.89731 -9.77206 -9.34623 -8.10166 -5.41205 -0.41992 -0.20664 0.79845 1.28724 1.32517 1.37031 1.38123 1.77308 2.28850 2.38842 2.84098 3.13950 3.22295 3.49792 3.66546 3.75048 3.80017 3.83832 3.97079 4.03255 4.07974 4.24526 4.28149 4.37510 4.55329 4.66734 4.70194 4.72756 4.74271 4.81906 4.87877 4.98138 4.99998 5.06824 5.09387 5.17330 5.29801 5.39979 5.46325 5.51551 5.70667 6.15681 6.19716 6.88428 7.01150 7.79030 7.94997 9.11553 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.003164 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.433274 B = 8846.139429 C =10009.639422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.053 4.053 3 Si 0.940 3.060 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.764 5.764 10 C 0.161 3.839 11 C -0.101 4.101 12 H 0.050 0.950 13 C -0.106 4.106 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.595 5.595 17 C 0.549 3.451 18 O -0.583 6.583 19 C -0.163 4.163 20 C -0.047 4.047 21 C -0.094 4.094 22 C -0.052 4.052 23 C -0.088 4.088 24 Cl -0.051 7.051 25 C 0.115 3.885 26 F -0.143 7.143 27 C 0.121 3.879 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.197 0.803 40 H 0.182 0.818 41 H 0.050 0.950 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.992 -9.663 -7.100 37.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.245 4.245 3 Si 0.769 3.231 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.410 5.410 10 C 0.035 3.965 11 C -0.121 4.121 12 H 0.068 0.932 13 C -0.143 4.143 14 C -0.167 4.167 15 C -0.025 4.025 16 N -0.326 5.326 17 C 0.337 3.663 18 O -0.463 6.463 19 C -0.167 4.167 20 C -0.065 4.065 21 C -0.112 4.112 22 C -0.070 4.070 23 C -0.116 4.116 24 Cl -0.022 7.022 25 C 0.094 3.906 26 F -0.121 7.121 27 C -0.002 4.002 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.189 0.811 39 H 0.214 0.786 40 H 0.199 0.801 41 H 0.069 0.931 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 35.475 -9.146 -6.986 37.295 hybrid contribution -0.764 2.193 0.825 2.464 sum 34.710 -6.953 -6.162 35.932 Atomic orbital electron populations 1.69832 1.06554 1.26496 1.60005 1.25277 0.95914 1.00238 1.03107 0.85648 0.78137 0.81392 0.77929 1.21002 1.21443 1.19738 1.19097 0.82564 0.93646 1.40566 0.91359 1.42921 1.02786 1.04343 1.90913 1.20857 0.89415 0.87121 0.99156 1.21626 0.94787 0.99044 0.96602 0.93193 1.21513 0.94549 0.94359 1.03926 1.22001 0.95846 1.02158 0.96686 1.22424 0.95159 0.85394 0.99518 1.48178 1.07255 1.08097 1.69109 1.18651 0.87985 0.83188 0.76456 1.90844 1.64915 1.37951 1.52609 1.19855 0.92355 1.02045 1.02441 1.21693 0.95806 0.95327 0.93712 1.21684 0.92319 0.97825 0.99379 1.21676 1.02858 0.91839 0.90611 1.21106 0.89306 1.00536 1.00611 1.98403 1.72570 1.62257 1.68997 1.17795 0.89930 0.92745 0.90094 1.91536 1.82942 1.74065 1.63565 1.21579 0.79090 1.01015 0.98504 0.93221 0.80781 0.94249 0.94933 0.90669 0.89360 0.93283 0.86657 0.87353 0.87896 0.81115 0.78624 0.80100 0.93122 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.94 13.97 21.65 0.30 -64.64 16 2 C -0.05 -3.33 5.50 84.86 0.47 -2.86 16 3 Si 0.94 50.83 27.74 68.60 1.90 52.73 16 4 H -0.28 -15.28 7.11 99.48 0.71 -14.57 16 5 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.27 -14.29 6.52 99.48 0.65 -13.64 16 7 C -0.23 -13.57 10.47 84.03 0.88 -12.69 16 8 H 0.07 4.31 8.06 -2.91 -0.02 4.29 16 9 N -0.76 -38.28 5.18 -343.45 -1.78 -40.06 16 10 C 0.16 6.09 5.66 86.38 0.49 6.58 16 11 C -0.10 -3.01 2.37 -10.72 -0.03 -3.04 16 12 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 13 C -0.11 -1.99 5.17 30.62 0.16 -1.83 16 14 C -0.13 -1.79 6.10 30.82 0.19 -1.60 16 15 C 0.10 1.26 5.59 86.51 0.48 1.74 16 16 N -0.60 -14.81 2.97 -821.64 -2.44 -17.24 16 17 C 0.55 16.81 6.89 86.74 0.60 17.40 16 18 O -0.58 -25.04 16.27 -3.93 -0.06 -25.11 16 19 C -0.16 -3.52 4.62 -20.05 -0.09 -3.61 16 20 C -0.05 -0.47 7.76 22.53 0.17 -0.29 16 21 C -0.09 -0.37 10.03 22.23 0.22 -0.14 16 22 C -0.05 -0.38 9.82 22.33 0.22 -0.16 16 23 C -0.09 -1.48 6.32 22.33 0.14 -1.34 16 24 Cl -0.05 -0.91 28.61 -2.72 -0.08 -0.99 16 25 C 0.12 2.79 7.24 22.70 0.16 2.96 16 26 F -0.14 -4.66 16.22 44.97 0.73 -3.93 16 27 C 0.12 3.72 5.52 86.36 0.48 4.20 16 28 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 29 H 0.36 18.41 4.75 -92.71 -0.44 17.97 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.99 5.37 -2.38 -0.01 0.98 16 38 H 0.17 0.84 7.74 -2.91 -0.02 0.82 16 39 H 0.20 -0.98 8.06 -2.91 -0.02 -1.01 16 40 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.05 2.06 6.20 -2.38 -0.01 2.05 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -87.67 360.57 3.68 -83.99 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.56 Total: 9.94 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.54 Total: 5.31 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -3.91 Total: -121.94 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.73 Total: -3.93 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.90 Total: 52.73 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -87.67 3.68 -83.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714078133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -87.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds