Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00101 * 2 1 4 4 H 1.48509 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47204 * 299.99553 * 3 2 1 6 6 H 1.48497 * 109.47293 * 60.00005 * 3 2 1 7 7 C 1.38820 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99518 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99645 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47183 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49983 * 304.93748 * 11 10 9 13 13 C 1.53038 * 109.50044 * 184.83850 * 11 10 9 14 14 C 1.53039 * 109.54223 * 178.68357 * 13 11 10 15 15 C 1.52767 * 109.38279 * 61.23544 * 14 13 11 16 16 N 1.46921 * 109.01039 * 305.59390 * 15 14 13 17 17 C 1.34776 * 120.63075 * 233.58205 * 16 15 14 18 18 O 1.21566 * 119.99983 * 183.92379 * 17 16 15 19 19 C 1.47696 * 119.99926 * 3.91934 * 17 16 15 20 20 C 1.39668 * 120.16008 * 305.97522 * 19 17 16 21 21 C 1.37856 * 119.90467 * 179.97438 * 20 19 17 22 22 C 1.38459 * 120.22538 * 0.02562 * 21 20 19 23 23 C 1.38297 * 120.32534 * 359.67373 * 22 21 20 24 24 Cl 1.73607 * 119.95244 * 180.32423 * 23 22 21 25 25 C 1.38433 * 120.09282 * 0.60504 * 23 22 21 26 26 F 1.35102 * 120.11310 * 179.69768 * 25 23 22 27 27 C 1.46928 * 118.73688 * 53.30897 * 16 15 14 28 28 H 0.97001 * 119.99789 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00373 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47251 * 60.00311 * 10 9 7 31 31 H 1.09003 * 109.47117 * 299.99843 * 10 9 7 32 32 H 1.09007 * 109.46173 * 298.70616 * 13 11 10 33 33 H 1.08998 * 109.46184 * 58.67285 * 13 11 10 34 34 H 1.09002 * 109.50082 * 181.31658 * 14 13 11 35 35 H 1.08998 * 109.49400 * 301.38475 * 14 13 11 36 36 H 1.08996 * 109.50917 * 185.70481 * 15 14 13 37 37 H 1.09008 * 109.42907 * 65.42978 * 15 14 13 38 38 H 1.07997 * 120.05441 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.88970 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.83133 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.59003 * 66.43564 * 27 16 15 42 42 H 1.09010 * 109.58339 * 186.71629 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3796 -4.7141 0.8420 13 6 1.8241 -6.1422 0.1216 14 6 0.8286 -7.3041 0.1540 15 6 0.0294 -7.3235 -1.1477 16 7 -0.5873 -6.0054 -1.3504 17 6 -1.9132 -5.8933 -1.5643 18 8 -2.4008 -4.8052 -1.8014 19 6 -2.7739 -7.0923 -1.5109 20 6 -2.4736 -8.2073 -2.2966 21 6 -3.2802 -9.3239 -2.2422 22 6 -4.3878 -9.3439 -1.4115 23 6 -4.6904 -8.2474 -0.6248 24 17 -6.0767 -8.2861 0.4196 25 6 -3.8928 -7.1170 -0.6732 26 9 -4.1916 -6.0434 0.0906 27 6 0.2680 -4.8115 -1.3092 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6845 -3.7146 0.8905 31 1 2.6845 -3.7146 -0.8895 32 1 2.4900 -6.2582 -0.7337 33 1 2.4104 -6.1407 1.0405 34 1 1.3697 -8.2439 0.2642 35 1 0.1472 -7.1758 0.9950 36 1 -0.7479 -8.0851 -1.0863 37 1 0.6972 -7.5463 -1.9800 38 1 -1.6107 -8.1948 -2.9459 39 1 -3.0480 -10.1857 -2.8502 40 1 -5.0156 -10.2219 -1.3741 41 1 0.9555 -4.8252 -2.1549 42 1 -0.3519 -3.9161 -1.3569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714078134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -46.474422 kcal Electronic energy + Delta-G solvation = -27329.409703 eV Core-core repulsion = 23250.014832 eV Total energy + Delta-G solvation = -4079.394870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.18172 -40.64345 -39.01919 -37.57789 -36.87887 -34.96245 -33.06478 -31.81942 -31.53308 -30.94129 -29.66997 -26.06211 -25.56392 -23.81956 -23.34233 -22.96119 -21.44568 -20.46095 -19.44554 -17.98733 -17.62434 -17.07140 -16.95759 -16.39971 -15.81510 -15.61826 -15.05450 -14.96844 -14.74749 -14.57365 -14.18454 -13.73182 -13.60630 -13.51389 -13.38098 -13.07480 -12.92278 -12.65529 -12.59358 -12.34943 -12.01943 -11.99087 -11.46488 -11.41823 -11.10737 -11.01290 -10.83802 -10.68250 -10.39447 -10.32604 -10.00339 -9.86924 -9.60003 -9.37435 -9.14886 -8.83860 -8.58557 -6.86535 -5.68749 -2.98871 0.31610 0.50213 1.54985 2.49448 2.79723 3.09249 3.47918 3.52532 3.55640 3.63086 4.05038 4.29974 4.39524 4.57876 4.61033 4.70264 4.84439 4.87668 4.99500 5.16870 5.28274 5.31613 5.35643 5.39767 5.53245 5.61023 5.64214 5.66684 5.77170 5.81568 5.91955 6.07365 6.10186 6.11072 6.19873 6.37472 6.51970 6.57990 6.76982 6.87770 7.34988 7.75774 8.09965 8.48622 9.59672 10.17411 10.51471 11.53508 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.002845 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.552855 B = 9838.130480 C =10932.685605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.108 4.108 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.601 5.601 17 C 0.555 3.445 18 O -0.508 6.508 19 C -0.143 4.143 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.067 4.067 23 C -0.081 4.081 24 Cl -0.043 7.043 25 C 0.157 3.843 26 F -0.108 7.108 27 C 0.121 3.879 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.070 0.930 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -27.935 -3.746 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.341 3.659 18 O -0.383 6.383 19 C -0.148 4.148 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.086 4.086 23 C -0.108 4.108 24 Cl -0.014 7.014 25 C 0.136 3.864 26 F -0.086 7.086 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.088 0.912 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.124 -27.150 -3.753 28.084 hybrid contribution -0.040 1.097 0.314 1.142 sum -6.164 -26.053 -3.438 26.993 Atomic orbital electron populations 1.69686 1.05056 1.25545 1.57359 1.24771 0.95497 0.97697 1.02982 0.86136 0.78706 0.84273 0.77170 1.20606 1.21874 1.21912 1.19237 0.90976 0.84147 1.42986 0.91174 1.42428 1.05961 0.99962 1.89486 1.20624 0.92902 0.85112 0.98040 1.21705 0.98030 0.95277 0.97764 0.90725 1.21525 0.97437 0.93625 1.02440 1.21846 0.98636 0.99310 0.97474 1.21908 0.97576 0.84637 0.98362 1.48078 1.06424 1.08518 1.70351 1.17934 0.82040 0.87784 0.78148 1.90918 1.73397 1.27172 1.46765 1.20056 0.96749 0.97151 1.00831 1.21339 0.99258 0.90740 0.96473 1.21124 0.94473 0.98981 0.99558 1.21143 0.97148 0.96686 0.93586 1.20914 0.93607 0.95825 1.00498 1.98407 1.39673 1.98512 1.64791 1.17335 0.93508 0.83692 0.91913 1.91644 1.92188 1.52487 1.72249 1.21805 0.93225 0.87548 0.97434 0.93508 0.78086 0.96005 0.96221 0.91649 0.91392 0.90701 0.91519 0.89710 0.90934 0.83622 0.83597 0.83504 0.91210 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.11 5.38 -59.91 -0.32 -19.43 16 10 C 0.16 3.24 5.65 -4.04 -0.02 3.21 16 11 C -0.11 -1.76 2.38 -90.50 -0.22 -1.97 16 12 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.32 5.17 -26.69 -0.14 -1.46 16 14 C -0.13 -1.28 6.07 -26.83 -0.16 -1.44 16 15 C 0.10 0.92 5.49 -3.93 -0.02 0.89 16 16 N -0.60 -8.39 2.98 -174.19 -0.52 -8.91 16 17 C 0.56 8.90 6.92 -12.40 -0.09 8.81 16 18 O -0.51 -10.76 16.29 5.31 0.09 -10.67 16 19 C -0.14 -1.75 4.89 -104.92 -0.51 -2.27 16 20 C -0.06 -0.46 7.42 -39.19 -0.29 -0.75 16 21 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 22 C -0.07 -0.44 9.82 -39.48 -0.39 -0.83 16 23 C -0.08 -0.81 6.32 -39.49 -0.25 -1.06 16 24 Cl -0.04 -0.43 28.61 -51.86 -1.48 -1.91 16 25 C 0.16 2.03 7.24 -38.93 -0.28 1.75 16 26 F -0.11 -1.75 16.22 2.25 0.04 -1.71 16 27 C 0.12 2.02 5.51 -3.71 -0.02 2.00 16 28 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 29 H 0.38 10.78 6.89 -40.82 -0.28 10.50 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.64 4.74 -51.93 -0.25 0.40 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.15 0.84 7.36 -52.49 -0.39 0.45 16 39 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 40 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.10 2.23 6.23 -51.92 -0.32 1.91 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -35.53 362.56 -9.50 -45.03 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.43 Total: 4.49 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.03 Total: -1.77 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.12 Total: -56.93 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.53 -9.50 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714078134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.442 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds