Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00101 * 2 1 4 4 H 1.48509 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47204 * 299.99553 * 3 2 1 6 6 H 1.48497 * 109.47293 * 60.00005 * 3 2 1 7 7 C 1.38820 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99518 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99645 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47183 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49983 * 304.93748 * 11 10 9 13 13 C 1.53038 * 109.50044 * 184.83850 * 11 10 9 14 14 C 1.53039 * 109.54223 * 178.68357 * 13 11 10 15 15 C 1.52767 * 109.38279 * 61.23544 * 14 13 11 16 16 N 1.46921 * 109.01039 * 305.59390 * 15 14 13 17 17 C 1.34776 * 120.63075 * 233.58205 * 16 15 14 18 18 O 1.21566 * 119.99983 * 183.92379 * 17 16 15 19 19 C 1.47696 * 119.99926 * 3.91934 * 17 16 15 20 20 C 1.39668 * 120.16008 * 305.97522 * 19 17 16 21 21 C 1.37856 * 119.90467 * 179.97438 * 20 19 17 22 22 C 1.38459 * 120.22538 * 0.02562 * 21 20 19 23 23 C 1.38297 * 120.32534 * 359.67373 * 22 21 20 24 24 Cl 1.73607 * 119.95244 * 180.32423 * 23 22 21 25 25 C 1.38433 * 120.09282 * 0.60504 * 23 22 21 26 26 F 1.35102 * 120.11310 * 179.69768 * 25 23 22 27 27 C 1.46928 * 118.73688 * 53.30897 * 16 15 14 28 28 H 0.97001 * 119.99789 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00373 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47251 * 60.00311 * 10 9 7 31 31 H 1.09003 * 109.47117 * 299.99843 * 10 9 7 32 32 H 1.09007 * 109.46173 * 298.70616 * 13 11 10 33 33 H 1.08998 * 109.46184 * 58.67285 * 13 11 10 34 34 H 1.09002 * 109.50082 * 181.31658 * 14 13 11 35 35 H 1.08998 * 109.49400 * 301.38475 * 14 13 11 36 36 H 1.08996 * 109.50917 * 185.70481 * 15 14 13 37 37 H 1.09008 * 109.42907 * 65.42978 * 15 14 13 38 38 H 1.07997 * 120.05441 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.88970 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.83133 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.59003 * 66.43564 * 27 16 15 42 42 H 1.09010 * 109.58339 * 186.71629 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3796 -4.7141 0.8420 13 6 1.8241 -6.1422 0.1216 14 6 0.8286 -7.3041 0.1540 15 6 0.0294 -7.3235 -1.1477 16 7 -0.5873 -6.0054 -1.3504 17 6 -1.9132 -5.8933 -1.5643 18 8 -2.4008 -4.8052 -1.8014 19 6 -2.7739 -7.0923 -1.5109 20 6 -2.4736 -8.2073 -2.2966 21 6 -3.2802 -9.3239 -2.2422 22 6 -4.3878 -9.3439 -1.4115 23 6 -4.6904 -8.2474 -0.6248 24 17 -6.0767 -8.2861 0.4196 25 6 -3.8928 -7.1170 -0.6732 26 9 -4.1916 -6.0434 0.0906 27 6 0.2680 -4.8115 -1.3092 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6845 -3.7146 0.8905 31 1 2.6845 -3.7146 -0.8895 32 1 2.4900 -6.2582 -0.7337 33 1 2.4104 -6.1407 1.0405 34 1 1.3697 -8.2439 0.2642 35 1 0.1472 -7.1758 0.9950 36 1 -0.7479 -8.0851 -1.0863 37 1 0.6972 -7.5463 -1.9800 38 1 -1.6107 -8.1948 -2.9459 39 1 -3.0480 -10.1857 -2.8502 40 1 -5.0156 -10.2219 -1.3741 41 1 0.9555 -4.8252 -2.1549 42 1 -0.3519 -3.9161 -1.3569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714078134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -70.305239 kcal Electronic energy + Delta-G solvation = -27330.443084 eV Core-core repulsion = 23250.014832 eV Total energy + Delta-G solvation = -4080.428252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.21399 -41.69406 -39.85626 -38.82662 -37.64297 -36.66064 -34.59920 -33.15495 -32.54404 -31.63754 -31.28876 -27.42729 -26.93728 -24.94258 -24.67204 -23.84815 -22.70880 -21.71256 -20.52246 -19.22485 -18.82775 -18.46832 -17.96629 -17.45620 -16.87618 -16.72710 -16.51508 -16.11439 -15.82642 -15.61973 -15.41976 -15.32965 -15.06371 -14.54074 -14.29757 -14.22245 -14.09691 -14.00879 -13.78177 -13.35867 -13.05699 -12.97665 -12.82122 -12.70544 -12.50569 -12.21210 -12.15839 -12.02939 -11.95617 -11.87371 -11.61031 -11.35501 -11.08024 -10.98925 -10.15691 -9.87039 -9.74282 -9.03868 -7.96447 -5.27536 -0.39800 -0.19616 0.80940 1.40697 1.43503 1.46075 1.56188 1.81344 2.30581 2.53749 2.86480 3.16143 3.36666 3.63464 3.73219 3.76428 3.86413 3.86654 4.04473 4.10120 4.13641 4.26968 4.33222 4.42306 4.58668 4.68304 4.72231 4.75316 4.77005 4.86220 4.89504 4.99169 5.01677 5.08041 5.10739 5.20708 5.32441 5.42212 5.45371 5.49569 5.53323 6.23334 6.24172 6.93140 7.28842 8.05413 8.27246 9.27328 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.002845 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.552855 B = 9838.130480 C =10932.685605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.751 5.751 10 C 0.158 3.842 11 C -0.096 4.096 12 H 0.043 0.957 13 C -0.105 4.105 14 C -0.129 4.129 15 C 0.090 3.910 16 N -0.595 5.595 17 C 0.546 3.454 18 O -0.582 6.582 19 C -0.163 4.163 20 C -0.050 4.050 21 C -0.093 4.093 22 C -0.051 4.051 23 C -0.088 4.088 24 Cl -0.051 7.051 25 C 0.113 3.887 26 F -0.144 7.144 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.369 0.631 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.174 0.826 39 H 0.199 0.801 40 H 0.183 0.817 41 H 0.083 0.917 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -32.743 -5.119 33.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.393 5.393 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.062 0.938 13 C -0.143 4.143 14 C -0.167 4.167 15 C -0.030 4.030 16 N -0.326 5.326 17 C 0.335 3.665 18 O -0.462 6.462 19 C -0.167 4.167 20 C -0.068 4.068 21 C -0.111 4.111 22 C -0.070 4.070 23 C -0.115 4.115 24 Cl -0.022 7.022 25 C 0.093 3.907 26 F -0.123 7.123 27 C 0.005 3.995 28 H 0.058 0.942 29 H 0.200 0.800 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.191 0.809 39 H 0.216 0.784 40 H 0.201 0.799 41 H 0.101 0.899 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.878 -32.049 -5.112 32.685 hybrid contribution -0.684 2.431 0.711 2.624 sum -4.562 -29.618 -4.401 30.289 Atomic orbital electron populations 1.69893 1.07024 1.25957 1.59620 1.25715 0.96349 1.01636 1.03776 0.84992 0.78376 0.79348 0.76553 1.18332 1.22147 1.22145 1.19731 0.91643 0.85222 1.40963 0.89991 1.42725 1.05505 1.01657 1.89427 1.20856 0.93525 0.84034 0.98399 1.21568 0.97025 0.96824 0.96183 0.93807 1.21519 0.97730 0.91277 1.03778 1.21863 0.97986 1.00066 0.96813 1.22374 0.98703 0.82326 0.99615 1.48174 1.05808 1.09540 1.69074 1.18681 0.82814 0.88256 0.76777 1.90868 1.74789 1.30315 1.50242 1.19866 0.96518 0.97139 1.03159 1.21724 1.00398 0.89557 0.95137 1.21706 0.92234 0.99185 0.97965 1.21690 0.97482 0.96154 0.91646 1.21112 0.93156 0.95965 1.01289 1.98401 1.40016 1.98504 1.65319 1.17830 0.95368 0.84099 0.93446 1.91542 1.92684 1.54513 1.73515 1.21465 0.92758 0.87071 0.98215 0.94189 0.80001 0.95427 0.94993 0.89502 0.90649 0.86342 0.93333 0.87275 0.87521 0.80858 0.78350 0.79947 0.89910 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.83 13.06 21.65 0.28 -64.55 16 2 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 3 Si 0.98 48.59 29.55 68.60 2.03 50.61 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 7 C -0.24 -14.34 9.99 84.04 0.84 -13.51 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.75 -41.04 5.38 -343.45 -1.85 -42.88 16 10 C 0.16 6.46 5.65 86.38 0.49 6.95 16 11 C -0.10 -3.21 2.38 -10.72 -0.03 -3.24 16 12 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 13 C -0.11 -2.21 5.17 30.62 0.16 -2.05 16 14 C -0.13 -2.02 6.07 30.53 0.19 -1.83 16 15 C 0.09 1.38 5.49 86.22 0.47 1.85 16 16 N -0.59 -16.84 2.98 -823.30 -2.45 -19.29 16 17 C 0.55 18.68 6.92 86.74 0.60 19.28 16 18 O -0.58 -27.58 16.29 -3.92 -0.06 -27.64 16 19 C -0.16 -3.96 4.89 -20.06 -0.10 -4.06 16 20 C -0.05 -0.58 7.42 22.52 0.17 -0.42 16 21 C -0.09 -0.48 10.03 22.23 0.22 -0.26 16 22 C -0.05 -0.46 9.82 22.34 0.22 -0.24 16 23 C -0.09 -1.67 6.32 22.33 0.14 -1.52 16 24 Cl -0.05 -1.02 28.61 -2.72 -0.08 -1.10 16 25 C 0.11 3.08 7.24 22.69 0.16 3.24 16 26 F -0.14 -5.25 16.22 44.97 0.73 -4.52 16 27 C 0.13 4.51 5.51 86.36 0.48 4.98 16 28 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.37 22.37 6.89 -92.71 -0.64 21.73 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.18 4.74 -2.39 -0.01 1.17 16 37 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.17 1.06 7.36 -2.91 -0.02 1.04 16 39 H 0.20 -0.86 8.06 -2.91 -0.02 -0.88 16 40 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 2.20 6.23 -2.38 -0.01 2.19 16 Total: -1.00 -89.30 362.56 3.50 -85.80 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.42 Total: 19.00 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.48 Total: 4.57 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -4.02 Total: -126.72 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.06 Total: -27.64 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.73 Total: -4.52 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.61 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -89.30 3.50 -85.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714078134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.500 kcal (2) G-P(sol) polarization free energy of solvation -89.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds