Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47056 * 5.51263 * 3 2 1 5 5 H 1.48507 * 109.47213 * 245.50875 * 3 2 1 6 6 H 1.48500 * 109.47281 * 125.51178 * 3 2 1 7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99730 * 3.80470 * 7 2 1 9 9 N 1.36939 * 119.99958 * 183.80020 * 7 2 1 10 10 C 1.47426 * 125.64732 * 326.92286 * 9 7 2 11 11 C 1.54905 * 104.83145 * 204.09408 * 10 9 7 12 12 C 1.55160 * 101.58194 * 322.98985 * 11 10 9 13 13 C 1.47019 * 125.64650 * 146.61829 * 9 7 2 14 14 H 1.08998 * 109.88376 * 59.56153 * 13 9 7 15 15 C 1.52996 * 109.88107 * 298.38836 * 13 9 7 16 16 N 1.46507 * 109.47024 * 59.10573 * 15 13 9 17 17 C 1.34766 * 119.99992 * 186.55633 * 16 15 13 18 18 O 1.21276 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00041 * 179.97438 * 17 16 15 20 20 C 1.50695 * 109.47400 * 179.97438 * 19 17 16 21 21 C 1.38454 * 120.02573 * 269.72791 * 20 19 17 22 22 F 1.35112 * 120.01509 * 359.97438 * 21 20 19 23 23 C 1.38445 * 119.96637 * 179.76579 * 21 20 19 24 24 C 1.38224 * 119.99864 * 0.48659 * 23 21 20 25 25 C 1.38199 * 120.03991 * 359.76660 * 24 23 21 26 26 C 1.38301 * 120.01588 * 90.00113 * 20 19 17 27 27 Cl 1.73596 * 119.99991 * 0.02567 * 26 20 19 28 28 H 0.97000 * 119.99963 * 185.05522 * 1 2 3 29 29 H 1.09005 * 110.36951 * 322.92952 * 10 9 7 30 30 H 1.09000 * 110.36808 * 85.25360 * 10 9 7 31 31 H 1.09000 * 111.00995 * 81.06335 * 11 10 9 32 32 H 1.09006 * 111.00674 * 204.91797 * 11 10 9 33 33 H 1.08996 * 110.71979 * 153.86613 * 12 11 10 34 34 H 1.08998 * 110.72100 * 276.96100 * 12 11 10 35 35 H 1.08997 * 109.47247 * 179.09974 * 15 13 9 36 36 H 1.09000 * 109.47726 * 299.10565 * 15 13 9 37 37 H 0.97000 * 119.99861 * 6.55448 * 16 15 13 38 38 H 1.09002 * 109.47020 * 299.99981 * 19 17 16 39 39 H 1.09007 * 109.46754 * 59.99772 * 19 17 16 40 40 H 1.08003 * 120.00222 * 180.23214 * 23 21 20 41 41 H 1.08002 * 119.98051 * 179.74900 * 24 23 21 42 42 H 1.08005 * 119.98501 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 0.1345 5 1 3.0004 1.7562 -1.2742 6 1 3.2020 1.6398 1.1396 7 6 2.0103 -1.2022 0.0005 8 1 1.4720 -2.1364 -0.0611 9 7 3.3774 -1.2035 0.0791 10 6 4.2718 -0.1796 -0.4911 11 6 5.6267 -0.9033 -0.6908 12 6 5.6744 -1.8248 0.5566 13 6 4.1960 -2.2228 0.7516 14 1 4.0146 -3.1994 0.3026 15 6 3.8571 -2.2614 2.2431 16 7 2.4349 -2.5692 2.4129 17 6 1.8777 -2.5255 3.6392 18 8 2.5537 -2.2319 4.6024 19 6 0.4146 -2.8415 3.8139 20 6 0.0451 -2.7223 5.2700 21 6 0.1392 -3.8255 6.1011 22 9 0.5617 -5.0099 5.6070 23 6 -0.1959 -3.7135 7.4397 24 6 -0.6337 -2.5030 7.9436 25 6 -0.7326 -1.4030 7.1129 26 6 -0.3934 -1.5120 5.7756 27 17 -0.5191 -0.1299 4.7327 28 1 -0.4850 -0.8368 0.0740 29 1 3.8849 0.1719 -1.4477 30 1 4.3853 0.6537 0.2023 31 1 5.6249 -1.4896 -1.6097 32 1 6.4538 -0.1933 -0.6838 33 1 6.2904 -2.7031 0.3639 34 1 6.0438 -1.2795 1.4251 35 1 4.4559 -3.0299 2.7320 36 1 4.0750 -1.2917 2.6905 37 1 1.8942 -2.8043 1.6426 38 1 -0.1809 -2.1403 3.2290 39 1 0.2190 -3.8578 3.4718 40 1 -0.1192 -4.5728 8.0894 41 1 -0.8988 -2.4169 8.9870 42 1 -1.0751 -0.4577 7.5074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714623778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -41.461862 kcal Electronic energy + Delta-G solvation = -27937.398913 eV Core-core repulsion = 23858.221403 eV Total energy + Delta-G solvation = -4079.177509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.94688 -39.69373 -38.73931 -37.75445 -36.29471 -33.84643 -32.92203 -32.77741 -30.45420 -29.88592 -29.61926 -27.53317 -24.77215 -23.44358 -22.87793 -22.03402 -21.09993 -19.77499 -19.26216 -17.81147 -17.58912 -16.84718 -16.50060 -16.11789 -15.69938 -15.48824 -15.05060 -14.97100 -14.67539 -14.53602 -13.63370 -13.49422 -13.37702 -13.35793 -13.26529 -12.93977 -12.69700 -12.35659 -12.20653 -11.73813 -11.56040 -11.41309 -11.30394 -11.24846 -11.04451 -10.98687 -10.68304 -10.60991 -10.50843 -9.88458 -9.43095 -9.39975 -9.22769 -8.76750 -8.71844 -8.70319 -8.25041 -7.06019 -6.31102 -3.49442 0.96171 1.00876 2.19826 3.22822 3.33554 3.37474 3.47082 3.64182 3.94523 4.18791 4.51979 4.52770 4.70179 4.79063 4.95772 5.10920 5.17238 5.28517 5.30934 5.44414 5.46766 5.49798 5.56458 5.72413 5.83366 5.89049 5.93254 5.95230 6.09134 6.10665 6.11966 6.14126 6.26140 6.32968 6.39650 6.60307 6.65483 6.75098 6.85518 7.18509 7.78862 8.24725 8.26218 8.86846 8.91854 9.44043 10.21943 11.05747 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004187 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.426223 B = 6686.202124 C = 7873.390208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 1.070 2.930 4 H -0.301 1.301 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.326 4.326 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.094 3.906 11 C -0.130 4.130 12 C -0.124 4.124 13 C 0.146 3.854 14 H 0.042 0.958 15 C 0.119 3.881 16 N -0.695 5.695 17 C 0.519 3.481 18 O -0.557 6.557 19 C -0.113 4.113 20 C -0.080 4.080 21 C 0.121 3.879 22 F -0.132 7.132 23 C -0.153 4.153 24 C -0.085 4.085 25 C -0.122 4.122 26 C 0.000 4.000 27 Cl -0.035 7.035 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -6.037 10.854 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.204 4.204 3 Si 0.903 3.097 4 H -0.229 1.229 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.453 4.453 8 H 0.085 0.915 9 N -0.330 5.330 10 C -0.030 4.030 11 C -0.168 4.168 12 C -0.162 4.162 13 C 0.038 3.962 14 H 0.060 0.940 15 C -0.007 4.007 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.437 6.437 19 C -0.152 4.152 20 C -0.083 4.083 21 C 0.101 3.899 22 F -0.111 7.111 23 C -0.172 4.172 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.027 4.027 27 Cl -0.006 7.006 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.296 -4.117 11.285 12.083 hybrid contribution 0.026 -1.823 -0.491 1.888 sum 1.321 -5.940 10.795 12.392 Atomic orbital electron populations 1.70939 1.05859 1.29497 1.49141 1.26070 0.96402 1.01429 0.96522 0.83788 0.73626 0.75858 0.76437 1.22924 1.21656 1.21647 1.19765 0.79102 0.94570 1.51912 0.91540 1.44734 1.02150 1.25414 1.60715 1.22296 0.90184 0.93117 0.97440 1.22705 0.97854 0.98551 0.97703 1.22518 0.95803 0.99427 0.98476 1.21303 0.90587 0.94092 0.90179 0.93993 1.21854 0.81068 0.99771 0.98025 1.45977 1.11498 1.68426 1.08853 1.20045 0.88447 0.77521 0.83532 1.90636 1.63805 1.49482 1.39749 1.20678 0.96245 1.05492 0.92824 1.19199 1.01209 0.91755 0.96097 1.17275 0.99519 0.80997 0.92064 1.91501 1.87499 1.43938 1.88136 1.21136 1.02780 0.99803 0.93468 1.20884 0.98138 0.91343 0.99946 1.21084 1.01551 1.00150 0.91330 1.20677 1.00977 0.88843 0.92237 1.98454 1.96144 1.40286 1.65722 0.92768 0.92126 0.95196 0.91492 0.91761 0.91529 0.91412 0.93373 0.92046 0.75132 0.86354 0.87911 0.84323 0.84257 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 13.70 55.49 0.76 -25.75 16 2 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 3 Si 1.07 26.39 24.69 -169.99 -4.20 22.20 16 4 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.29 -6.60 5.97 56.52 0.34 -6.27 16 6 H -0.29 -7.06 6.40 56.52 0.36 -6.70 16 7 C -0.33 -8.31 8.37 -15.06 -0.13 -8.43 16 8 H 0.07 1.76 7.02 -52.49 -0.37 1.39 16 9 N -0.60 -13.59 2.91 -162.57 -0.47 -14.06 16 10 C 0.09 1.95 4.63 -2.53 -0.01 1.94 16 11 C -0.13 -2.08 7.09 -24.58 -0.17 -2.26 16 12 C -0.12 -1.92 6.48 -24.89 -0.16 -2.08 16 13 C 0.15 2.75 3.38 -66.95 -0.23 2.52 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 15 C 0.12 2.31 5.23 -4.04 -0.02 2.29 16 16 N -0.70 -13.96 4.79 -60.29 -0.29 -14.25 16 17 C 0.52 10.50 7.82 -10.99 -0.09 10.42 16 18 O -0.56 -12.67 16.01 5.56 0.09 -12.58 16 19 C -0.11 -1.95 5.26 -29.03 -0.15 -2.10 16 20 C -0.08 -1.31 4.38 -104.52 -0.46 -1.77 16 21 C 0.12 1.78 7.24 -39.43 -0.29 1.49 16 22 F -0.13 -2.00 16.47 2.25 0.04 -1.96 16 23 C -0.15 -1.77 10.03 -39.51 -0.40 -2.17 16 24 C -0.08 -0.88 10.04 -39.60 -0.40 -1.28 16 25 C -0.12 -1.50 9.83 -39.54 -0.39 -1.89 16 26 C 0.00 0.00 6.31 -39.50 -0.25 -0.25 16 27 Cl -0.04 -0.62 27.30 -51.86 -1.42 -2.03 16 28 H 0.26 7.42 8.73 -40.82 -0.36 7.07 16 29 H 0.06 1.32 6.26 -51.93 -0.33 0.99 16 30 H 0.03 0.66 5.13 -51.93 -0.27 0.39 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 7.83 -51.93 -0.41 0.62 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 37 H 0.41 8.28 5.93 -40.82 -0.24 8.04 16 38 H 0.12 2.14 6.90 -51.93 -0.36 1.78 16 39 H 0.10 1.54 7.63 -51.93 -0.40 1.15 16 40 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -31.31 355.36 -8.79 -40.10 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.42 Total: 6.67 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.23 Total: -3.70 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.00 Total: -54.05 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.20 Total: 22.20 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.31 -8.79 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.363 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds