Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47056 * 5.51263 * 3 2 1 5 5 H 1.48507 * 109.47213 * 245.50875 * 3 2 1 6 6 H 1.48500 * 109.47281 * 125.51178 * 3 2 1 7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99730 * 3.80470 * 7 2 1 9 9 N 1.36939 * 119.99958 * 183.80020 * 7 2 1 10 10 C 1.47426 * 125.64732 * 326.92286 * 9 7 2 11 11 C 1.54905 * 104.83145 * 204.09408 * 10 9 7 12 12 C 1.55160 * 101.58194 * 322.98985 * 11 10 9 13 13 C 1.47019 * 125.64650 * 146.61829 * 9 7 2 14 14 H 1.08998 * 109.88376 * 59.56153 * 13 9 7 15 15 C 1.52996 * 109.88107 * 298.38836 * 13 9 7 16 16 N 1.46507 * 109.47024 * 59.10573 * 15 13 9 17 17 C 1.34766 * 119.99992 * 186.55633 * 16 15 13 18 18 O 1.21276 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00041 * 179.97438 * 17 16 15 20 20 C 1.50695 * 109.47400 * 179.97438 * 19 17 16 21 21 C 1.38454 * 120.02573 * 269.72791 * 20 19 17 22 22 F 1.35112 * 120.01509 * 359.97438 * 21 20 19 23 23 C 1.38445 * 119.96637 * 179.76579 * 21 20 19 24 24 C 1.38224 * 119.99864 * 0.48659 * 23 21 20 25 25 C 1.38199 * 120.03991 * 359.76660 * 24 23 21 26 26 C 1.38301 * 120.01588 * 90.00113 * 20 19 17 27 27 Cl 1.73596 * 119.99991 * 0.02567 * 26 20 19 28 28 H 0.97000 * 119.99963 * 185.05522 * 1 2 3 29 29 H 1.09005 * 110.36951 * 322.92952 * 10 9 7 30 30 H 1.09000 * 110.36808 * 85.25360 * 10 9 7 31 31 H 1.09000 * 111.00995 * 81.06335 * 11 10 9 32 32 H 1.09006 * 111.00674 * 204.91797 * 11 10 9 33 33 H 1.08996 * 110.71979 * 153.86613 * 12 11 10 34 34 H 1.08998 * 110.72100 * 276.96100 * 12 11 10 35 35 H 1.08997 * 109.47247 * 179.09974 * 15 13 9 36 36 H 1.09000 * 109.47726 * 299.10565 * 15 13 9 37 37 H 0.97000 * 119.99861 * 6.55448 * 16 15 13 38 38 H 1.09002 * 109.47020 * 299.99981 * 19 17 16 39 39 H 1.09007 * 109.46754 * 59.99772 * 19 17 16 40 40 H 1.08003 * 120.00222 * 180.23214 * 23 21 20 41 41 H 1.08002 * 119.98051 * 179.74900 * 24 23 21 42 42 H 1.08005 * 119.98501 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 0.1345 5 1 3.0004 1.7562 -1.2742 6 1 3.2020 1.6398 1.1396 7 6 2.0103 -1.2022 0.0005 8 1 1.4720 -2.1364 -0.0611 9 7 3.3774 -1.2035 0.0791 10 6 4.2718 -0.1796 -0.4911 11 6 5.6267 -0.9033 -0.6908 12 6 5.6744 -1.8248 0.5566 13 6 4.1960 -2.2228 0.7516 14 1 4.0146 -3.1994 0.3026 15 6 3.8571 -2.2614 2.2431 16 7 2.4349 -2.5692 2.4129 17 6 1.8777 -2.5255 3.6392 18 8 2.5537 -2.2319 4.6024 19 6 0.4146 -2.8415 3.8139 20 6 0.0451 -2.7223 5.2700 21 6 0.1392 -3.8255 6.1011 22 9 0.5617 -5.0099 5.6070 23 6 -0.1959 -3.7135 7.4397 24 6 -0.6337 -2.5030 7.9436 25 6 -0.7326 -1.4030 7.1129 26 6 -0.3934 -1.5120 5.7756 27 17 -0.5191 -0.1299 4.7327 28 1 -0.4850 -0.8368 0.0740 29 1 3.8849 0.1719 -1.4477 30 1 4.3853 0.6537 0.2023 31 1 5.6249 -1.4896 -1.6097 32 1 6.4538 -0.1933 -0.6838 33 1 6.2904 -2.7031 0.3639 34 1 6.0438 -1.2795 1.4251 35 1 4.4559 -3.0299 2.7320 36 1 4.0750 -1.2917 2.6905 37 1 1.8942 -2.8043 1.6426 38 1 -0.1809 -2.1403 3.2290 39 1 0.2190 -3.8578 3.4718 40 1 -0.1192 -4.5728 8.0894 41 1 -0.8988 -2.4169 8.9870 42 1 -1.0751 -0.4577 7.5074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714623778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -60.817337 kcal Electronic energy + Delta-G solvation = -27938.238229 eV Core-core repulsion = 23858.221403 eV Total energy + Delta-G solvation = -4080.016826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.06048 -41.08658 -40.05231 -39.28753 -37.51115 -35.46353 -34.77835 -34.09896 -31.64571 -31.46549 -31.09832 -28.81052 -26.36272 -25.20877 -23.91745 -23.27475 -22.51098 -21.40952 -20.81250 -19.58225 -18.82227 -18.05244 -17.95925 -17.44459 -17.13295 -16.79246 -16.60008 -16.36840 -16.05435 -15.77046 -15.40370 -15.14140 -14.80250 -14.73143 -14.48205 -14.36387 -14.01709 -13.91549 -13.46755 -13.30263 -12.94562 -12.76963 -12.71182 -12.61571 -12.48707 -12.40424 -12.17093 -12.01876 -11.89798 -11.48012 -11.26137 -11.18217 -10.99182 -10.70478 -9.92618 -9.89624 -9.76413 -9.01415 -8.38805 -5.55060 -0.06825 -0.02194 1.02750 1.37039 1.46773 1.62256 1.64012 2.21755 2.50771 2.55491 3.15435 3.20503 3.34601 3.36706 3.64930 3.85020 3.85638 3.91465 4.01003 4.15736 4.17746 4.29385 4.32639 4.33387 4.43563 4.50871 4.63087 4.73827 4.79184 4.82921 5.00029 5.00517 5.02403 5.07148 5.14098 5.16205 5.26041 5.46347 5.57577 5.69066 5.78301 6.25921 6.61053 6.88832 7.24944 7.47814 8.24755 8.94969 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004187 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.426223 B = 6686.202124 C = 7873.390208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.051 4.051 3 Si 1.096 2.904 4 H -0.319 1.319 5 H -0.260 1.260 6 H -0.290 1.290 7 C -0.296 4.296 8 H 0.052 0.948 9 N -0.622 5.622 10 C 0.082 3.918 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.143 3.857 14 H 0.050 0.950 15 C 0.121 3.879 16 N -0.700 5.700 17 C 0.516 3.484 18 O -0.583 6.583 19 C -0.106 4.106 20 C -0.108 4.108 21 C 0.100 3.900 22 F -0.140 7.140 23 C -0.142 4.142 24 C -0.066 4.066 25 C -0.121 4.121 26 C -0.022 4.022 27 Cl -0.068 7.068 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.407 0.593 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.173 0.827 41 H 0.188 0.812 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -7.171 12.539 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.248 4.248 3 Si 0.926 3.074 4 H -0.248 1.248 5 H -0.186 1.186 6 H -0.217 1.217 7 C -0.426 4.426 8 H 0.069 0.931 9 N -0.349 5.349 10 C -0.042 4.042 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.036 3.964 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.351 5.351 17 C 0.302 3.698 18 O -0.465 6.465 19 C -0.145 4.145 20 C -0.110 4.110 21 C 0.081 3.919 22 F -0.119 7.119 23 C -0.161 4.161 24 C -0.084 4.084 25 C -0.139 4.139 26 C -0.049 4.049 27 Cl -0.039 7.039 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.190 0.810 41 H 0.206 0.794 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.204 -5.274 12.948 14.343 hybrid contribution -0.527 -1.589 -0.912 1.907 sum 2.676 -6.863 12.036 14.111 Atomic orbital electron populations 1.70994 1.06851 1.28969 1.52718 1.26813 0.96512 1.03808 0.97693 0.83473 0.72833 0.73379 0.77672 1.24814 1.18583 1.21715 1.19663 0.80886 0.93486 1.48518 0.93059 1.44914 1.01610 1.26570 1.61817 1.22389 0.92563 0.93004 0.96275 1.22672 0.95619 0.98760 0.98377 1.22552 0.93405 1.00856 0.98509 1.21503 0.92490 0.93324 0.89079 0.93267 1.21865 0.81010 0.98969 0.98650 1.46082 1.11969 1.68257 1.08824 1.20522 0.89512 0.76693 0.83048 1.90597 1.64738 1.50713 1.40462 1.20577 0.93866 1.05758 0.94344 1.19225 1.03250 0.93012 0.95559 1.17575 1.00665 0.80349 0.93311 1.91474 1.87775 1.44173 1.88462 1.21609 1.00731 1.01524 0.92223 1.21448 0.95534 0.89710 1.01704 1.21485 1.00402 1.02060 0.89965 1.20903 1.03033 0.87715 0.93259 1.98438 1.96444 1.41906 1.67068 0.93764 0.93448 0.96214 0.90318 0.88711 0.87929 0.90864 0.91331 0.94682 0.75466 0.87959 0.86406 0.80965 0.79433 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 13.70 21.65 0.30 -57.40 16 2 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 3 Si 1.10 54.50 24.69 68.60 1.69 56.19 16 4 H -0.32 -16.64 7.11 99.48 0.71 -15.94 16 5 H -0.26 -11.56 5.97 99.48 0.59 -10.97 16 6 H -0.29 -14.22 6.40 99.48 0.64 -13.59 16 7 C -0.30 -15.45 8.37 84.03 0.70 -14.74 16 8 H 0.05 2.82 7.02 -2.91 -0.02 2.80 16 9 N -0.62 -27.70 2.91 -668.25 -1.94 -29.65 16 10 C 0.08 3.26 4.63 86.85 0.40 3.66 16 11 C -0.12 -3.29 7.09 31.99 0.23 -3.06 16 12 C -0.11 -3.14 6.48 31.79 0.21 -2.94 16 13 C 0.14 5.14 3.38 45.35 0.15 5.29 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C 0.12 4.65 5.23 86.38 0.45 5.10 16 16 N -0.70 -28.79 4.79 -463.07 -2.22 -31.01 16 17 C 0.52 21.53 7.82 87.66 0.69 22.22 16 18 O -0.58 -27.13 16.01 -3.02 -0.05 -27.18 16 19 C -0.11 -3.83 5.26 29.10 0.15 -3.68 16 20 C -0.11 -3.58 4.38 -19.80 -0.09 -3.66 16 21 C 0.10 2.86 7.24 22.37 0.16 3.02 16 22 F -0.14 -4.17 16.47 44.97 0.74 -3.43 16 23 C -0.14 -2.84 10.03 22.32 0.22 -2.62 16 24 C -0.07 -1.11 10.04 22.26 0.22 -0.88 16 25 C -0.12 -2.71 9.83 22.30 0.22 -2.49 16 26 C -0.02 -0.70 6.31 22.32 0.14 -0.56 16 27 Cl -0.07 -2.47 27.30 -2.72 -0.07 -2.54 16 28 H 0.25 15.16 8.73 -92.71 -0.81 14.35 16 29 H 0.05 2.00 6.26 -2.38 -0.01 1.98 16 30 H 0.02 0.85 5.13 -2.39 -0.01 0.84 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.16 8.14 -2.38 -0.02 2.15 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 1.96 7.83 -2.39 -0.02 1.94 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.03 1.53 8.09 -2.39 -0.02 1.51 16 37 H 0.41 17.07 5.93 -92.71 -0.55 16.52 16 38 H 0.10 4.01 6.90 -2.39 -0.02 3.99 16 39 H 0.12 3.72 7.63 -2.38 -0.02 3.71 16 40 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -71.96 355.36 3.07 -68.89 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.29 Total: 23.89 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.33 Total: 2.23 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -3.87 Total: -118.06 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.74 Total: -3.43 kcal Atomic # 14 Polarization: 54.50 SS G_CDS: 1.69 Total: 56.19 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.54 kcal Total: -71.96 3.07 -68.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.072 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds