Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00435 * 2 1 4 4 H 1.48494 * 109.47225 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.46709 * 30.00332 * 3 2 1 6 6 H 1.48497 * 109.46872 * 150.00226 * 3 2 1 7 7 C 1.38821 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64825 * 359.97331 * 9 7 2 11 11 C 1.54910 * 104.83228 * 155.91139 * 10 9 7 12 12 C 1.55155 * 101.58389 * 37.00683 * 11 10 9 13 13 H 1.09002 * 110.71826 * 83.03684 * 12 11 10 14 14 C 1.52992 * 110.72460 * 206.13836 * 12 11 10 15 15 C 1.52997 * 109.47482 * 182.55998 * 14 12 11 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 14 18 18 O 1.21570 * 120.00608 * 0.02562 * 17 16 15 19 19 C 1.47650 * 119.99762 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.12860 * 359.72699 * 19 17 16 21 21 C 1.37775 * 119.89231 * 179.76771 * 20 19 17 22 22 C 1.38721 * 120.15679 * 0.51160 * 21 20 19 23 23 F 1.35099 * 119.87014 * 179.76674 * 22 21 20 24 24 C 1.38559 * 120.26308 * 359.73838 * 22 21 20 25 25 C 1.38036 * 120.10501 * 0.02562 * 24 22 21 26 26 Cl 1.73598 * 120.08090 * 180.02562 * 25 24 22 27 27 C 1.47311 * 125.61574 * 180.19905 * 9 7 2 28 28 H 0.97001 * 119.99164 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36634 * 37.06966 * 10 9 7 30 30 H 1.09000 * 110.46154 * 274.79231 * 10 9 7 31 31 H 1.09002 * 111.00219 * 278.93350 * 11 10 9 32 32 H 1.08994 * 111.03665 * 155.10034 * 11 10 9 33 33 H 1.09002 * 109.47103 * 62.55751 * 14 12 11 34 34 H 1.08998 * 109.46862 * 302.56563 * 14 12 11 35 35 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 36 36 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 37 37 H 0.96996 * 119.99606 * 0.02562 * 16 15 14 38 38 H 1.08004 * 120.05375 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.92478 * 180.22622 * 21 20 19 40 40 H 1.07996 * 119.95458 * 180.02562 * 24 22 21 41 41 H 1.09007 * 110.06458 * 61.67719 * 27 9 7 42 42 H 1.08995 * 109.85117 * 300.41941 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0006 11 6 -0.4023 -3.9323 -0.6111 12 6 0.7781 -4.7525 -0.0269 13 1 0.5451 -5.1006 0.9794 14 6 1.1222 -5.9314 -0.9394 15 6 2.2447 -6.7558 -0.3062 16 7 2.5737 -7.8851 -1.1797 17 6 3.5410 -8.7531 -0.8232 18 8 4.1402 -8.5995 0.2233 19 6 3.8730 -9.8909 -1.7038 20 6 3.1822 -10.0733 -2.9043 21 6 3.4992 -11.1338 -3.7246 22 6 4.4951 -12.0265 -3.3561 23 9 4.7980 -13.0671 -4.1626 24 6 5.1808 -11.8547 -2.1644 25 6 4.8753 -10.7931 -1.3366 26 17 5.7353 -10.5782 0.1560 27 6 1.9336 -3.7299 0.0031 28 1 -0.4849 0.8401 0.0004 29 1 -0.5998 -1.7588 -0.6147 30 1 -0.5284 -2.4862 1.0185 31 1 -0.3535 -3.8981 -1.6995 32 1 -1.3594 -4.3330 -0.2774 33 1 1.4492 -5.5567 -1.9093 34 1 0.2404 -6.5585 -1.0708 35 1 1.9176 -7.1305 0.6638 36 1 3.1264 -6.1286 -0.1748 37 1 2.0958 -8.0074 -2.0148 38 1 2.4037 -9.3816 -3.1909 39 1 2.9680 -11.2732 -4.6546 40 1 5.9554 -12.5524 -1.8826 41 1 2.5280 -3.8686 0.9062 42 1 2.5614 -3.8541 -0.8791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714886171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = -53.804847 kcal Electronic energy + Delta-G solvation = -25867.608438 eV Core-core repulsion = 21787.895696 eV Total energy + Delta-G solvation = -4079.712741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.11270 -41.30364 -39.61185 -39.12041 -37.49805 -36.44786 -34.78966 -32.92487 -32.04550 -31.70979 -30.54933 -28.14019 -26.61895 -24.94773 -24.23231 -23.35318 -22.00470 -21.73642 -20.75724 -19.33823 -18.87964 -18.51960 -17.83858 -17.09454 -16.84507 -16.64550 -16.55331 -16.20524 -16.11834 -15.63871 -15.45923 -14.98176 -14.78276 -14.54186 -14.24998 -14.04329 -13.99161 -13.73671 -13.48363 -13.31138 -13.07301 -12.79156 -12.68921 -12.50169 -12.43939 -12.24855 -12.19030 -12.00669 -11.75854 -11.48663 -11.40248 -11.21165 -10.74261 -10.67054 -10.23970 -10.13714 -9.81568 -8.86508 -7.76980 -5.20929 -0.57536 -0.10028 0.97893 1.45522 1.47430 1.56200 1.63864 2.06317 2.49649 2.49950 3.00746 3.31820 3.46439 3.59021 3.76201 3.79021 3.81215 3.95960 3.99147 4.19571 4.22703 4.35073 4.40323 4.60236 4.68142 4.72519 4.75357 4.78679 4.89139 4.91971 4.93599 5.07055 5.15332 5.21976 5.29996 5.42231 5.45337 5.50908 5.54633 5.71685 5.85407 6.33778 6.51926 7.12727 7.19674 7.80785 8.44386 9.24564 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.001943 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.060782 B =14407.040964 C =14860.872545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.084 4.084 13 H 0.077 0.923 14 C -0.100 4.100 15 C 0.125 3.875 16 N -0.707 5.707 17 C 0.546 3.454 18 O -0.556 6.556 19 C -0.154 4.154 20 C -0.032 4.032 21 C -0.144 4.144 22 C 0.134 3.866 23 F -0.130 7.130 24 C -0.160 4.160 25 C 0.022 3.978 26 Cl -0.041 7.041 27 C 0.132 3.868 28 H 0.247 0.753 29 H 0.071 0.929 30 H -0.019 1.019 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.416 0.584 38 H 0.181 0.819 39 H 0.182 0.818 40 H 0.162 0.838 41 H 0.010 0.990 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -28.514 -10.460 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.096 0.904 14 C -0.138 4.138 15 C 0.001 3.999 16 N -0.360 5.360 17 C 0.333 3.667 18 O -0.435 6.435 19 C -0.158 4.158 20 C -0.050 4.050 21 C -0.163 4.163 22 C 0.114 3.886 23 F -0.108 7.108 24 C -0.180 4.180 25 C -0.006 4.006 26 Cl -0.011 7.011 27 C 0.008 3.992 28 H 0.057 0.943 29 H 0.089 0.911 30 H -0.001 1.001 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.254 0.746 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.179 0.821 41 H 0.028 0.972 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.522 -28.194 -9.588 30.121 hybrid contribution 0.614 1.027 0.254 1.223 sum 5.137 -27.167 -9.334 29.181 Atomic orbital electron populations 1.70066 1.06116 1.24951 1.58720 1.25633 0.96700 1.00937 1.02873 0.85061 0.77464 0.79094 0.77624 1.20920 1.21920 1.19881 1.19452 0.90905 0.84114 1.42408 0.90618 1.44951 1.02962 1.01006 1.86696 1.21766 0.83863 0.95756 0.96313 1.22870 0.97910 0.94951 1.00169 1.22007 0.94658 0.93919 0.99778 0.90448 1.21640 0.98368 0.95181 0.98607 1.21309 0.98109 0.86683 0.93750 1.45748 1.37827 1.27067 1.25404 1.18330 0.80130 0.82605 0.85613 1.90888 1.51973 1.74923 1.25669 1.19887 1.00209 0.97415 0.98257 1.21506 0.97091 0.96719 0.89727 1.21553 0.97657 0.94097 1.02966 1.17846 0.96068 0.86136 0.88547 1.91561 1.92169 1.55439 1.71650 1.21077 1.03531 0.99349 0.94015 1.20869 0.94524 0.95481 0.89722 1.98441 1.74912 1.96586 1.31176 1.21642 0.95347 0.84989 0.97261 0.94347 0.91099 1.00087 0.91193 0.89564 0.90438 0.88056 0.91806 0.93209 0.74563 0.80153 0.80079 0.82087 0.97211 0.95381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.23 10.09 21.65 0.22 -57.01 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.82 10.28 84.04 0.86 -12.95 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -33.09 3.40 -691.23 -2.35 -35.44 16 10 C 0.15 7.28 5.89 86.86 0.51 7.80 16 11 C -0.12 -4.10 6.54 31.99 0.21 -3.89 16 12 C -0.08 -2.56 2.95 -9.61 -0.03 -2.58 16 13 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 14 C -0.10 -2.01 4.72 30.59 0.14 -1.87 16 15 C 0.13 2.74 5.54 86.38 0.48 3.22 16 16 N -0.71 -11.94 5.51 -466.16 -2.57 -14.51 16 17 C 0.55 12.09 7.76 86.73 0.67 12.76 16 18 O -0.56 -17.18 13.96 -3.94 -0.05 -17.23 16 19 C -0.15 -2.54 5.88 -20.07 -0.12 -2.66 16 20 C -0.03 -0.26 9.53 22.51 0.21 -0.04 16 21 C -0.14 -1.00 10.01 22.28 0.22 -0.77 16 22 C 0.13 1.50 7.30 22.46 0.16 1.66 16 23 F -0.13 -1.59 17.26 44.97 0.78 -0.82 16 24 C -0.16 -2.20 9.79 22.30 0.22 -1.98 16 25 C 0.02 0.41 6.35 22.59 0.14 0.55 16 26 Cl -0.04 -0.94 26.02 -2.72 -0.07 -1.01 16 27 C 0.13 5.44 6.13 86.67 0.53 5.97 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 32 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.36 7.58 -2.39 -0.02 1.34 16 37 H 0.42 3.63 6.50 -92.71 -0.60 3.03 16 38 H 0.18 0.15 6.40 -2.91 -0.02 0.13 16 39 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.03 1.12 7.73 -2.39 -0.02 1.11 16 Total: -1.00 -76.23 362.51 3.13 -73.10 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 0.45 Total: 2.74 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.69 Total: 1.68 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.70 Total: -106.96 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -76.23 3.13 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714886171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.296 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds