Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38450 * 119.84122 * 2 1 4 4 C 1.37853 * 120.23631 * 180.02562 * 3 2 1 5 5 C 1.39667 * 119.89787 * 0.28977 * 4 3 2 6 6 C 1.47695 * 120.16039 * 179.71851 * 5 4 3 7 7 O 1.21569 * 120.00393 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00083 * 359.97438 * 6 5 4 9 9 C 1.46503 * 120.00363 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.46822 * 324.99745 * 9 8 6 11 11 C 1.52999 * 109.46907 * 204.99959 * 9 8 6 12 12 N 1.46496 * 109.47215 * 54.99985 * 11 9 8 13 13 C 1.36939 * 119.99993 * 179.97438 * 12 11 9 14 14 H 1.08008 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00195 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99874 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47168 * 89.99594 * 17 15 13 19 19 H 1.48497 * 109.47288 * 210.00020 * 17 15 13 20 20 H 1.48505 * 109.47076 * 330.00018 * 17 15 13 21 21 C 1.52996 * 109.46819 * 84.99685 * 9 8 6 22 22 C 1.52998 * 117.50263 * 8.75241 * 21 9 8 23 23 C 1.52993 * 117.50269 * 300.08637 * 21 9 8 24 24 C 1.39800 * 119.67991 * 359.45914 * 5 4 3 25 25 F 1.35099 * 120.11288 * 180.25676 * 24 5 4 26 26 C 1.38301 * 119.83599 * 180.02562 * 2 1 3 27 27 Cl 1.73594 * 119.95536 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.46809 * 89.99698 * 1 2 3 29 29 H 1.08999 * 109.47185 * 209.99624 * 1 2 3 30 30 H 1.08997 * 109.46786 * 329.99910 * 1 2 3 31 31 H 1.08000 * 119.88087 * 0.04798 * 3 2 1 32 32 H 1.08002 * 120.04825 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99645 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46637 * 174.99833 * 11 9 8 35 35 H 1.08997 * 109.46915 * 294.99574 * 11 9 8 36 36 H 0.96991 * 120.00206 * 359.97438 * 12 11 9 37 37 H 0.97001 * 119.99567 * 179.97438 * 16 15 13 38 38 H 1.09002 * 115.54910 * 154.41456 * 21 9 8 39 39 H 1.09000 * 117.49581 * 359.97438 * 22 21 9 40 40 H 1.08996 * 117.50252 * 145.01720 * 22 21 9 41 41 H 1.09003 * 117.50170 * 214.97870 * 23 21 9 42 42 H 1.09006 * 117.49791 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2104 -0.0005 5 6 4.2789 0.0045 -0.0072 6 6 5.7559 0.0079 -0.0141 7 8 6.3662 -1.0434 -0.0194 8 7 6.4270 1.1767 -0.0145 9 6 7.8921 1.1802 -0.0207 10 1 8.2598 0.3380 0.5654 11 6 8.4015 2.4874 0.5895 12 7 7.8226 2.6617 1.9239 13 6 8.1370 3.7677 2.6676 14 1 8.8114 4.5119 2.2701 15 6 7.5881 3.9331 3.9317 16 7 7.8900 4.9965 4.6463 17 14 6.4212 2.6466 4.6190 18 1 7.1969 1.6210 5.3616 19 1 5.4532 3.2969 5.5383 20 1 5.6857 1.9989 3.5031 21 6 8.3961 1.0587 -1.4601 22 6 7.3619 1.1672 -2.5824 23 6 7.9898 -0.1882 -2.2481 24 6 3.5794 -1.2059 -0.0018 25 9 4.2521 -2.3775 -0.0030 26 6 2.1951 -1.1997 -0.0005 27 17 1.3216 -2.6999 -0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6514 2.1336 0.0008 32 1 4.1088 2.1490 -0.0001 33 1 5.9401 2.0156 -0.0106 34 1 9.4882 2.4531 0.6665 35 1 8.1085 3.3233 -0.0457 36 1 7.2167 1.9936 2.2807 37 1 7.5061 5.1122 5.5295 38 1 9.3873 1.4716 -1.6476 39 1 6.3223 1.3248 -2.2952 40 1 7.6728 1.6512 -3.5082 41 1 8.7135 -0.5954 -2.9542 42 1 7.3629 -0.9219 -1.7411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716616015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -16.495209 kcal Electronic energy + Delta-G solvation = -27625.140169 eV Core-core repulsion = 23547.045295 eV Total energy + Delta-G solvation = -4078.094874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.07515 -40.55616 -39.27027 -37.28112 -36.78600 -35.13840 -33.77551 -32.96589 -31.42758 -30.81190 -28.98886 -27.61444 -24.14183 -23.24588 -23.06709 -22.29433 -21.37992 -21.02539 -19.85016 -18.45382 -17.68164 -17.11143 -17.05685 -16.32453 -15.85074 -15.83764 -15.53841 -14.81128 -14.66326 -14.35972 -14.20828 -13.97494 -13.82316 -13.63935 -13.34478 -12.85393 -12.76873 -12.60511 -12.38625 -12.27375 -11.96141 -11.91061 -11.76983 -11.60448 -11.35634 -11.25688 -11.09456 -10.92589 -10.29650 -10.24258 -9.87775 -9.76170 -9.63950 -9.20757 -9.06507 -9.00443 -8.86406 -7.33437 -5.84235 -3.20912 0.27613 0.61958 1.62088 2.52015 3.07215 3.30495 3.35579 3.36536 3.41370 3.67831 3.95674 4.21236 4.30613 4.52074 4.52969 4.60606 4.74177 4.94420 5.00214 5.07967 5.10589 5.16478 5.34329 5.39806 5.44846 5.48093 5.56942 5.60536 5.69983 5.72488 5.78686 5.82559 5.85952 6.03797 6.16698 6.22632 6.32143 6.43020 6.51907 6.71157 7.52287 7.90730 8.19539 8.34328 9.12610 9.84802 10.03771 11.33828 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.004182 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.664623 B = 6694.239539 C = 8384.738184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.025 4.025 3 C -0.128 4.128 4 C -0.046 4.046 5 C -0.166 4.166 6 C 0.558 3.442 7 O -0.521 6.521 8 N -0.705 5.705 9 C 0.165 3.835 10 H 0.094 0.906 11 C 0.153 3.847 12 N -0.756 5.756 13 C -0.247 4.247 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.931 5.931 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.160 4.160 22 C -0.177 4.177 23 C -0.187 4.187 24 C 0.174 3.826 25 F -0.101 7.101 26 C -0.093 4.093 27 Cl -0.043 7.043 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -9.871 -14.988 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 C -0.146 4.146 4 C -0.065 4.065 5 C -0.171 4.171 6 C 0.345 3.655 7 O -0.399 6.399 8 N -0.357 5.357 9 C 0.060 3.940 10 H 0.112 0.888 11 C 0.025 3.975 12 N -0.402 5.402 13 C -0.377 4.377 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.579 5.579 17 Si 0.711 3.289 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.180 4.180 22 C -0.214 4.214 23 C -0.223 4.223 24 C 0.152 3.848 25 F -0.079 7.079 26 C -0.121 4.121 27 Cl -0.014 7.014 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.241 0.759 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.953 -10.573 -14.905 22.992 hybrid contribution -0.928 -0.700 0.677 1.345 sum -14.881 -11.273 -14.229 23.473 Atomic orbital electron populations 1.20984 0.89188 1.04283 1.03592 1.19870 0.97338 0.90482 0.94884 1.21038 0.93719 0.97726 1.02096 1.21429 0.94504 0.97089 0.93429 1.20065 0.94658 0.92520 1.09827 1.17821 0.86012 0.84602 0.77111 1.90777 1.69016 1.31007 1.49063 1.45929 1.07822 1.08091 1.73808 1.20887 0.78137 1.00810 0.94128 0.88783 1.20902 0.97127 0.92614 0.86858 1.42705 1.56268 1.26016 1.15202 1.19034 1.23753 0.98112 0.96794 0.89045 1.24643 1.00055 0.97240 0.96781 1.69698 1.47859 1.28145 1.12175 0.86617 0.81508 0.81785 0.78956 1.21023 1.21638 1.20461 1.22661 0.99727 1.03343 0.92223 1.22891 0.98431 1.01176 0.98917 1.23345 1.04045 0.91858 1.03098 1.17313 0.87671 0.81782 0.97986 1.91635 1.79832 1.44018 1.92406 1.20737 0.90258 0.89177 1.11894 1.98377 1.75415 1.30675 1.96962 0.89772 0.90325 0.90147 0.83505 0.83580 0.75943 0.93688 0.94633 0.80460 0.92972 0.86885 0.89189 0.89290 0.89545 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.60 36.01 0.35 -0.43 16 2 C -0.02 -0.23 5.89 -104.52 -0.62 -0.84 16 3 C -0.13 -1.11 9.67 -39.64 -0.38 -1.49 16 4 C -0.05 -0.48 9.54 -39.19 -0.37 -0.86 16 5 C -0.17 -2.25 5.88 -104.92 -0.62 -2.87 16 6 C 0.56 8.72 6.61 -12.40 -0.08 8.64 16 7 O -0.52 -9.58 12.37 5.31 0.07 -9.51 16 8 N -0.70 -10.23 3.00 -54.80 -0.16 -10.40 16 9 C 0.16 2.54 2.59 -67.93 -0.18 2.36 16 10 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 11 C 0.15 2.71 5.80 -4.04 -0.02 2.69 16 12 N -0.76 -16.97 5.24 -59.91 -0.31 -17.29 16 13 C -0.25 -6.72 10.47 -15.06 -0.16 -6.87 16 14 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 15 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 16 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 17 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 21 C -0.16 -2.10 5.70 -90.63 -0.52 -2.62 16 22 C -0.18 -2.12 9.74 -26.69 -0.26 -2.38 16 23 C -0.19 -2.48 9.82 -26.70 -0.26 -2.74 16 24 C 0.17 2.41 7.26 -38.93 -0.28 2.13 16 25 F -0.10 -1.61 15.12 2.25 0.03 -1.58 16 26 C -0.09 -1.07 6.31 -39.49 -0.25 -1.32 16 27 Cl -0.04 -0.46 26.93 -51.86 -1.40 -1.85 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.51 6.88 -51.93 -0.36 0.16 16 30 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.31 6.40 -52.49 -0.34 0.97 16 33 H 0.40 5.29 6.63 -40.82 -0.27 5.02 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.36 8.19 5.20 -40.82 -0.21 7.97 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 39 H 0.09 1.08 6.67 -51.93 -0.35 0.73 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.12 1.81 5.01 -51.93 -0.26 1.55 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -32.61 361.19 -9.17 -41.78 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.14 Total: 10.50 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.75 Total: -6.43 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.30 Total: -55.48 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.40 Total: -1.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.61 -9.17 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.284 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds