Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38450 * 119.84122 * 2 1 4 4 C 1.37853 * 120.23631 * 180.02562 * 3 2 1 5 5 C 1.39667 * 119.89787 * 0.28977 * 4 3 2 6 6 C 1.47695 * 120.16039 * 179.71851 * 5 4 3 7 7 O 1.21569 * 120.00393 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00083 * 359.97438 * 6 5 4 9 9 C 1.46503 * 120.00363 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.46822 * 324.99745 * 9 8 6 11 11 C 1.52999 * 109.46907 * 204.99959 * 9 8 6 12 12 N 1.46496 * 109.47215 * 54.99985 * 11 9 8 13 13 C 1.36939 * 119.99993 * 179.97438 * 12 11 9 14 14 H 1.08008 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00195 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99874 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47168 * 89.99594 * 17 15 13 19 19 H 1.48497 * 109.47288 * 210.00020 * 17 15 13 20 20 H 1.48505 * 109.47076 * 330.00018 * 17 15 13 21 21 C 1.52996 * 109.46819 * 84.99685 * 9 8 6 22 22 C 1.52998 * 117.50263 * 8.75241 * 21 9 8 23 23 C 1.52993 * 117.50269 * 300.08637 * 21 9 8 24 24 C 1.39800 * 119.67991 * 359.45914 * 5 4 3 25 25 F 1.35099 * 120.11288 * 180.25676 * 24 5 4 26 26 C 1.38301 * 119.83599 * 180.02562 * 2 1 3 27 27 Cl 1.73594 * 119.95536 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.46809 * 89.99698 * 1 2 3 29 29 H 1.08999 * 109.47185 * 209.99624 * 1 2 3 30 30 H 1.08997 * 109.46786 * 329.99910 * 1 2 3 31 31 H 1.08000 * 119.88087 * 0.04798 * 3 2 1 32 32 H 1.08002 * 120.04825 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99645 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46637 * 174.99833 * 11 9 8 35 35 H 1.08997 * 109.46915 * 294.99574 * 11 9 8 36 36 H 0.96991 * 120.00206 * 359.97438 * 12 11 9 37 37 H 0.97001 * 119.99567 * 179.97438 * 16 15 13 38 38 H 1.09002 * 115.54910 * 154.41456 * 21 9 8 39 39 H 1.09000 * 117.49581 * 359.97438 * 22 21 9 40 40 H 1.08996 * 117.50252 * 145.01720 * 22 21 9 41 41 H 1.09003 * 117.50170 * 214.97870 * 23 21 9 42 42 H 1.09006 * 117.49791 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2104 -0.0005 5 6 4.2789 0.0045 -0.0072 6 6 5.7559 0.0079 -0.0141 7 8 6.3662 -1.0434 -0.0194 8 7 6.4270 1.1767 -0.0145 9 6 7.8921 1.1802 -0.0207 10 1 8.2598 0.3380 0.5654 11 6 8.4015 2.4874 0.5895 12 7 7.8226 2.6617 1.9239 13 6 8.1370 3.7677 2.6676 14 1 8.8114 4.5119 2.2701 15 6 7.5881 3.9331 3.9317 16 7 7.8900 4.9965 4.6463 17 14 6.4212 2.6466 4.6190 18 1 7.1969 1.6210 5.3616 19 1 5.4532 3.2969 5.5383 20 1 5.6857 1.9989 3.5031 21 6 8.3961 1.0587 -1.4601 22 6 7.3619 1.1672 -2.5824 23 6 7.9898 -0.1882 -2.2481 24 6 3.5794 -1.2059 -0.0018 25 9 4.2521 -2.3775 -0.0030 26 6 2.1951 -1.1997 -0.0005 27 17 1.3216 -2.6999 -0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6514 2.1336 0.0008 32 1 4.1088 2.1490 -0.0001 33 1 5.9401 2.0156 -0.0106 34 1 9.4882 2.4531 0.6665 35 1 8.1085 3.3233 -0.0457 36 1 7.2167 1.9936 2.2807 37 1 7.5061 5.1122 5.5295 38 1 9.3873 1.4716 -1.6476 39 1 6.3223 1.3248 -2.2952 40 1 7.6728 1.6512 -3.5082 41 1 8.7135 -0.5954 -2.9542 42 1 7.3629 -0.9219 -1.7411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716616015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -35.642083 kcal Electronic energy + Delta-G solvation = -27625.970440 eV Core-core repulsion = 23547.045295 eV Total energy + Delta-G solvation = -4078.925145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.13518 -41.65274 -40.17074 -38.43453 -37.65221 -36.70694 -35.06983 -34.01912 -33.20930 -31.67973 -30.38173 -28.50153 -25.83676 -24.07810 -24.02627 -23.41686 -22.90788 -22.04443 -21.02132 -19.98189 -19.11320 -18.09773 -18.02120 -17.48256 -16.96110 -16.92946 -16.69948 -16.42107 -15.80189 -15.44863 -15.35094 -14.98105 -14.88580 -14.80997 -14.66441 -14.57766 -13.84933 -13.54065 -13.47054 -13.27348 -13.06162 -12.96943 -12.84481 -12.74296 -12.66168 -12.58768 -12.27423 -12.11064 -12.06457 -11.83486 -11.35997 -11.07430 -11.00570 -10.83784 -10.17796 -9.96366 -9.88984 -9.32587 -8.03448 -5.36718 -0.59379 -0.22193 0.79191 1.32850 1.38590 1.43094 1.55007 1.95660 2.39353 2.45069 2.80291 2.91273 3.28693 3.31588 3.45630 3.56416 3.68443 3.86674 3.87065 4.02352 4.07266 4.16676 4.34212 4.39397 4.43327 4.56239 4.67190 4.69667 4.76409 4.81476 4.86371 4.92894 5.03685 5.08804 5.14474 5.16459 5.24003 5.36304 5.43916 5.49692 5.76468 6.20055 6.38283 7.04732 7.06336 7.81008 7.99066 9.17838 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.004182 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.664623 B = 6694.239539 C = 8384.738184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.015 4.015 3 C -0.115 4.115 4 C -0.045 4.045 5 C -0.187 4.187 6 C 0.556 3.444 7 O -0.557 6.557 8 N -0.699 5.699 9 C 0.175 3.825 10 H 0.070 0.930 11 C 0.154 3.846 12 N -0.757 5.757 13 C -0.228 4.228 14 H 0.066 0.934 15 C -0.053 4.053 16 N -0.979 5.979 17 Si 0.942 3.058 18 H -0.293 1.293 19 H -0.291 1.291 20 H -0.253 1.253 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.194 4.194 24 C 0.144 3.856 25 F -0.124 7.124 26 C -0.101 4.101 27 Cl -0.041 7.041 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.363 0.637 37 H 0.258 0.742 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 -9.305 -16.503 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.132 4.132 4 C -0.063 4.063 5 C -0.192 4.192 6 C 0.344 3.656 7 O -0.437 6.437 8 N -0.351 5.351 9 C 0.070 3.930 10 H 0.088 0.912 11 C 0.028 3.972 12 N -0.403 5.403 13 C -0.359 4.359 14 H 0.084 0.916 15 C -0.245 4.245 16 N -0.630 5.630 17 Si 0.770 3.230 18 H -0.220 1.220 19 H -0.218 1.218 20 H -0.177 1.177 21 C -0.183 4.183 22 C -0.197 4.197 23 C -0.231 4.231 24 C 0.123 3.877 25 F -0.103 7.103 26 C -0.129 4.129 27 Cl -0.012 7.012 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.204 0.796 32 H 0.181 0.819 33 H 0.250 0.750 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.196 0.804 37 H 0.067 0.933 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.309 -10.018 -16.474 25.253 hybrid contribution -0.198 -0.854 1.070 1.383 sum -16.507 -10.871 -15.405 25.059 Atomic orbital electron populations 1.21114 0.86778 1.05268 1.04910 1.20323 0.98978 0.89676 0.92674 1.21496 0.92976 0.98996 0.99765 1.21693 0.95519 0.96433 0.92704 1.19994 0.93363 0.93665 1.12146 1.18176 0.87057 0.84121 0.76270 1.90759 1.70001 1.32240 1.50727 1.45838 1.07381 1.08314 1.73582 1.20626 0.78806 0.98308 0.95259 0.91229 1.21029 0.96978 0.94341 0.84877 1.42699 1.56406 1.24614 1.16572 1.19032 1.21795 0.98309 0.96799 0.91609 1.25313 1.02440 0.99280 0.97447 1.69852 1.49943 1.30525 1.12657 0.85620 0.79578 0.79068 0.78717 1.21998 1.21759 1.17741 1.22601 1.00868 1.03823 0.90983 1.22980 0.98053 0.99689 0.99007 1.23270 1.04478 0.91889 1.03474 1.17669 0.88741 0.81299 0.99993 1.91566 1.80494 1.45267 1.92926 1.20914 0.89521 0.90263 1.12204 1.98373 1.75044 1.30841 1.96969 0.88079 0.90680 0.87865 0.79644 0.81946 0.74977 0.93609 0.93097 0.80384 0.93318 0.85382 0.89213 0.87069 0.88092 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.60 71.24 0.68 -0.40 16 2 C -0.02 -0.23 5.89 -19.80 -0.12 -0.35 16 3 C -0.11 -1.53 9.67 22.23 0.22 -1.31 16 4 C -0.04 -0.82 9.54 22.52 0.21 -0.61 16 5 C -0.19 -4.92 5.88 -20.06 -0.12 -5.04 16 6 C 0.56 17.31 6.61 86.74 0.57 17.88 16 7 O -0.56 -21.18 12.37 -3.93 -0.05 -21.23 16 8 N -0.70 -19.52 3.00 -445.55 -1.34 -20.85 16 9 C 0.17 5.25 2.59 44.99 0.12 5.37 16 10 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 11 C 0.15 5.27 5.80 86.38 0.50 5.77 16 12 N -0.76 -33.17 5.24 -343.46 -1.80 -34.97 16 13 C -0.23 -12.36 10.47 84.03 0.88 -11.48 16 14 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 15 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 16 N -0.98 -60.92 13.97 21.65 0.30 -60.62 16 17 Si 0.94 44.88 27.74 68.60 1.90 46.79 16 18 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 21 C -0.16 -4.04 5.70 -10.80 -0.06 -4.10 16 22 C -0.16 -3.47 9.74 30.62 0.30 -3.17 16 23 C -0.19 -4.98 9.82 30.62 0.30 -4.68 16 24 C 0.14 4.00 7.26 22.69 0.16 4.16 16 25 F -0.12 -4.15 15.12 44.97 0.68 -3.47 16 26 C -0.10 -2.20 6.31 22.33 0.14 -2.06 16 27 Cl -0.04 -0.84 26.93 -2.72 -0.07 -0.91 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.07 0.75 6.88 -2.39 -0.02 0.74 16 30 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.16 2.35 6.40 -2.91 -0.02 2.34 16 33 H 0.41 9.94 6.63 -92.71 -0.62 9.33 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.36 15.86 5.20 -92.71 -0.48 15.38 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.13 2.79 8.11 -2.39 -0.02 2.77 16 39 H 0.09 1.96 6.67 -2.39 -0.02 1.94 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 2.85 5.01 -2.38 -0.01 2.84 16 Total: -1.00 -72.93 361.19 3.82 -69.11 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.07 Total: 28.71 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.26 Total: -2.56 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -2.84 Total: -116.45 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.68 Total: -3.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.07 Total: -0.91 kcal Total: -72.93 3.82 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.469 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds