Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 110.65723 * 2 1 4 4 N 1.46494 * 109.47512 * 56.80578 * 3 2 1 5 5 C 1.36933 * 120.00146 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.38815 * 120.00296 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00506 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99845 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47200 * 90.00188 * 9 7 5 11 11 H 1.48496 * 109.47312 * 210.00350 * 9 7 5 12 12 H 1.48503 * 109.46918 * 330.00273 * 9 7 5 13 13 C 1.54618 * 110.73904 * 236.80352 * 2 1 3 14 14 C 1.54001 * 105.04253 * 263.51229 * 13 2 1 15 15 N 1.47476 * 107.08683 * 1.30642 * 14 13 2 16 16 C 1.34783 * 127.03322 * 154.51648 * 15 14 13 17 17 O 1.21563 * 119.99586 * 185.27450 * 16 15 14 18 18 C 1.47769 * 119.99788 * 5.26941 * 16 15 14 19 19 C 1.39614 * 120.14571 * 36.61514 * 18 16 15 20 20 C 1.38118 * 119.83919 * 180.31307 * 19 18 16 21 21 F 1.35099 * 119.93444 * 179.97438 * 20 19 18 22 22 C 1.38632 * 120.12925 * 359.93936 * 20 19 18 23 23 C 1.38233 * 120.29256 * 0.04178 * 22 20 19 24 24 C 1.38155 * 120.16001 * 359.97438 * 23 22 20 25 25 Cl 1.73598 * 120.06457 * 179.97438 * 24 23 22 26 26 C 1.48118 * 105.93608 * 334.78121 * 15 14 13 27 27 H 1.09002 * 109.47200 * 183.19397 * 1 2 3 28 28 H 1.08998 * 109.47139 * 303.19520 * 1 2 3 29 29 H 1.08997 * 109.47150 * 63.19154 * 1 2 3 30 30 H 1.09001 * 109.47029 * 176.80936 * 3 2 1 31 31 H 1.09009 * 109.46715 * 296.80421 * 3 2 1 32 32 H 0.96999 * 120.00003 * 359.97438 * 4 3 2 33 33 H 0.96995 * 120.00231 * 180.02562 * 8 7 5 34 34 H 1.09000 * 110.32322 * 144.61653 * 13 2 1 35 35 H 1.09004 * 110.41146 * 22.45297 * 13 2 1 36 36 H 1.08998 * 109.91046 * 241.94110 * 14 13 2 37 37 H 1.09004 * 109.90641 * 120.67151 * 14 13 2 38 38 H 1.07994 * 120.08058 * 0.25757 * 19 18 16 39 39 H 1.08005 * 119.84939 * 180.02562 * 22 20 19 40 40 H 1.08001 * 119.91739 * 179.97438 * 23 22 20 41 41 H 1.08997 * 110.66665 * 157.50773 * 26 15 14 42 42 H 1.09008 * 110.65773 * 280.62848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5346 2.1554 1.1558 5 6 1.8809 3.4636 1.3648 6 1 2.5490 3.9617 0.6779 7 6 1.3742 4.1493 2.4603 8 7 1.7067 5.4069 2.6610 9 14 0.2192 3.2875 3.6488 10 1 1.0097 2.6459 4.7298 11 1 -0.7135 4.2803 4.2402 12 1 -0.5569 2.2513 2.9213 13 6 2.0776 -0.7917 -1.2100 14 6 2.3762 -2.2003 -0.6639 15 7 1.9871 -2.2051 0.7586 16 6 1.6221 -3.2721 1.4967 17 8 1.2328 -3.1172 2.6379 18 6 1.6949 -4.6301 0.9187 19 6 2.7361 -4.9684 0.0522 20 6 2.7944 -6.2376 -0.4895 21 9 3.8007 -6.5669 -1.3285 22 6 1.8227 -7.1745 -0.1733 23 6 0.7897 -6.8455 0.6843 24 6 0.7195 -5.5794 1.2327 25 17 -0.5793 -5.1686 2.3089 26 6 2.0732 -0.7966 1.2085 27 1 -0.3634 -1.0261 0.0573 28 1 -0.3633 0.5626 0.8599 29 1 -0.3633 0.4635 -0.9172 30 1 3.1581 1.4096 0.0572 31 1 1.7643 1.9351 -0.9173 32 1 0.9342 1.7081 1.7725 33 1 1.3529 5.8858 3.4266 34 1 2.9910 -0.3287 -1.5834 35 1 1.3292 -0.8429 -2.0009 36 1 3.4402 -2.4172 -0.7585 37 1 1.7936 -2.9416 -1.2108 38 1 3.4935 -4.2392 -0.1945 39 1 1.8730 -8.1658 -0.5992 40 1 0.0357 -7.5799 0.9261 41 1 1.4488 -0.6345 2.0871 42 1 3.1077 -0.5212 1.4143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716876979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -34.234076 kcal Electronic energy + Delta-G solvation = -27337.400781 eV Core-core repulsion = 23258.536692 eV Total energy + Delta-G solvation = -4078.864089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.44406 -40.77717 -39.26463 -37.85230 -36.72973 -35.08082 -33.00361 -31.84728 -30.80866 -30.72224 -29.49246 -26.94891 -26.09950 -24.52603 -23.27279 -23.08512 -21.74684 -20.23306 -19.10030 -18.19066 -17.48221 -17.31264 -17.13347 -16.57040 -16.12267 -15.83010 -15.62770 -14.66153 -14.55197 -14.46312 -14.30929 -13.92528 -13.76519 -13.68306 -13.29092 -13.17850 -12.97655 -12.55207 -12.48392 -12.24093 -12.02163 -11.82588 -11.78587 -11.59532 -11.35677 -11.30733 -10.89470 -10.63284 -10.54919 -10.37979 -10.11598 -9.98882 -9.76096 -9.56196 -9.10600 -8.90568 -8.75565 -7.23445 -5.76675 -3.12301 0.14676 0.42127 1.71768 2.35828 2.67241 3.02916 3.39805 3.43515 3.48414 3.59005 3.93932 4.09448 4.31872 4.49459 4.57196 4.58961 4.60454 4.80508 4.89760 5.07945 5.12384 5.22213 5.29533 5.34661 5.39450 5.45670 5.53166 5.56549 5.66184 5.75936 5.86810 5.88474 5.93173 6.04307 6.10759 6.20149 6.33926 6.49350 6.60908 6.66698 7.35548 7.93100 7.98801 8.42265 9.21078 9.93634 10.12741 11.41664 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003091 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.658028 B = 9056.070092 C =10187.114211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.174 3.826 4 N -0.755 5.755 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.123 4.123 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.571 3.429 17 O -0.509 6.509 18 C -0.087 4.087 19 C -0.114 4.114 20 C 0.099 3.901 21 F -0.131 7.131 22 C -0.122 4.122 23 C -0.088 4.088 24 C -0.005 4.005 25 Cl -0.029 7.029 26 C 0.118 3.882 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 -28.597 -10.197 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.358 3.642 17 O -0.384 6.384 18 C -0.091 4.091 19 C -0.134 4.134 20 C 0.079 3.921 21 F -0.109 7.109 22 C -0.141 4.141 23 C -0.107 4.107 24 C -0.033 4.033 25 Cl 0.000 7.000 26 C -0.004 4.004 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.148 -28.328 -9.469 29.869 hybrid contribution -0.675 -0.547 0.765 1.158 sum -0.823 -28.875 -8.705 30.170 Atomic orbital electron populations 1.21736 0.93526 1.00846 1.02789 1.21865 0.96612 0.96200 0.93806 1.20601 0.96071 0.87326 0.91339 1.42759 1.57356 1.11608 1.28376 1.19030 1.23954 0.86079 1.08342 0.89183 1.24649 1.00129 0.95759 0.98412 1.69695 1.48541 1.09097 1.30845 0.86627 0.81477 0.78867 0.82012 1.20908 1.21673 1.20313 1.22580 1.02354 0.93353 0.97823 1.22298 0.99814 0.99041 0.81395 1.48694 1.66271 1.07903 1.11690 1.17523 0.78303 0.82850 0.85482 1.90884 1.44997 1.85172 1.17325 1.19641 0.95679 0.94865 0.98897 1.21434 0.99276 0.96190 0.96466 1.17536 0.87628 0.93820 0.93079 1.91554 1.57996 1.92850 1.68507 1.21287 0.93728 1.00224 0.98907 1.20921 0.98797 0.94724 0.96241 1.21038 0.92136 0.94176 0.95910 1.98442 1.45924 1.93602 1.62021 1.22597 1.02082 0.77502 0.98185 0.93417 0.91815 0.92226 0.95149 0.94961 0.80466 0.93045 0.89768 0.90246 0.91232 0.90848 0.82948 0.83265 0.83155 0.89453 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.30 37.16 0.31 -1.64 16 2 C -0.08 -1.18 0.64 -152.82 -0.10 -1.28 16 3 C 0.17 3.12 5.11 -4.05 -0.02 3.10 16 4 N -0.75 -17.40 4.96 -59.91 -0.30 -17.69 16 5 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 9 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 13 C -0.12 -1.24 6.09 -25.36 -0.15 -1.40 16 14 C 0.10 0.90 5.27 -2.99 -0.02 0.89 16 15 N -0.61 -7.78 3.19 -171.12 -0.55 -8.33 16 16 C 0.57 7.99 7.26 -12.36 -0.09 7.90 16 17 O -0.51 -8.96 15.32 5.31 0.08 -8.88 16 18 C -0.09 -0.95 5.44 -104.95 -0.57 -1.52 16 19 C -0.11 -0.98 8.19 -39.11 -0.32 -1.30 16 20 C 0.10 0.76 7.29 -39.48 -0.29 0.47 16 21 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 22 C -0.12 -0.75 10.02 -39.44 -0.40 -1.15 16 23 C -0.09 -0.61 9.81 -39.61 -0.39 -1.00 16 24 C 0.00 -0.05 6.33 -39.07 -0.25 -0.29 16 25 Cl -0.03 -0.35 26.71 -51.86 -1.39 -1.73 16 26 C 0.12 1.76 5.68 -2.31 -0.01 1.74 16 27 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.06 1.11 6.69 -51.93 -0.35 0.76 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.36 8.32 4.07 -40.82 -0.17 8.16 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 37 H 0.07 0.59 7.25 -51.93 -0.38 0.21 16 38 H 0.15 1.13 5.91 -52.49 -0.31 0.82 16 39 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.09 1.53 7.71 -51.93 -0.40 1.13 16 42 H 0.08 1.22 8.02 -51.92 -0.42 0.80 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -33.51 358.66 -8.51 -42.02 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.32 Total: 3.45 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.55 Total: -2.37 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.07 Total: -54.65 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.39 Total: -1.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.51 -8.51 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716876979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.789 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds