Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 110.65723 * 2 1 4 4 N 1.46494 * 109.47512 * 56.80578 * 3 2 1 5 5 C 1.36933 * 120.00146 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.38815 * 120.00296 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00506 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99845 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47200 * 90.00188 * 9 7 5 11 11 H 1.48496 * 109.47312 * 210.00350 * 9 7 5 12 12 H 1.48503 * 109.46918 * 330.00273 * 9 7 5 13 13 C 1.54618 * 110.73904 * 236.80352 * 2 1 3 14 14 C 1.54001 * 105.04253 * 263.51229 * 13 2 1 15 15 N 1.47476 * 107.08683 * 1.30642 * 14 13 2 16 16 C 1.34783 * 127.03322 * 154.51648 * 15 14 13 17 17 O 1.21563 * 119.99586 * 185.27450 * 16 15 14 18 18 C 1.47769 * 119.99788 * 5.26941 * 16 15 14 19 19 C 1.39614 * 120.14571 * 36.61514 * 18 16 15 20 20 C 1.38118 * 119.83919 * 180.31307 * 19 18 16 21 21 F 1.35099 * 119.93444 * 179.97438 * 20 19 18 22 22 C 1.38632 * 120.12925 * 359.93936 * 20 19 18 23 23 C 1.38233 * 120.29256 * 0.04178 * 22 20 19 24 24 C 1.38155 * 120.16001 * 359.97438 * 23 22 20 25 25 Cl 1.73598 * 120.06457 * 179.97438 * 24 23 22 26 26 C 1.48118 * 105.93608 * 334.78121 * 15 14 13 27 27 H 1.09002 * 109.47200 * 183.19397 * 1 2 3 28 28 H 1.08998 * 109.47139 * 303.19520 * 1 2 3 29 29 H 1.08997 * 109.47150 * 63.19154 * 1 2 3 30 30 H 1.09001 * 109.47029 * 176.80936 * 3 2 1 31 31 H 1.09009 * 109.46715 * 296.80421 * 3 2 1 32 32 H 0.96999 * 120.00003 * 359.97438 * 4 3 2 33 33 H 0.96995 * 120.00231 * 180.02562 * 8 7 5 34 34 H 1.09000 * 110.32322 * 144.61653 * 13 2 1 35 35 H 1.09004 * 110.41146 * 22.45297 * 13 2 1 36 36 H 1.08998 * 109.91046 * 241.94110 * 14 13 2 37 37 H 1.09004 * 109.90641 * 120.67151 * 14 13 2 38 38 H 1.07994 * 120.08058 * 0.25757 * 19 18 16 39 39 H 1.08005 * 119.84939 * 180.02562 * 22 20 19 40 40 H 1.08001 * 119.91739 * 179.97438 * 23 22 20 41 41 H 1.08997 * 110.66665 * 157.50773 * 26 15 14 42 42 H 1.09008 * 110.65773 * 280.62848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5346 2.1554 1.1558 5 6 1.8809 3.4636 1.3648 6 1 2.5490 3.9617 0.6779 7 6 1.3742 4.1493 2.4603 8 7 1.7067 5.4069 2.6610 9 14 0.2192 3.2875 3.6488 10 1 1.0097 2.6459 4.7298 11 1 -0.7135 4.2803 4.2402 12 1 -0.5569 2.2513 2.9213 13 6 2.0776 -0.7917 -1.2100 14 6 2.3762 -2.2003 -0.6639 15 7 1.9871 -2.2051 0.7586 16 6 1.6221 -3.2721 1.4967 17 8 1.2328 -3.1172 2.6379 18 6 1.6949 -4.6301 0.9187 19 6 2.7361 -4.9684 0.0522 20 6 2.7944 -6.2376 -0.4895 21 9 3.8007 -6.5669 -1.3285 22 6 1.8227 -7.1745 -0.1733 23 6 0.7897 -6.8455 0.6843 24 6 0.7195 -5.5794 1.2327 25 17 -0.5793 -5.1686 2.3089 26 6 2.0732 -0.7966 1.2085 27 1 -0.3634 -1.0261 0.0573 28 1 -0.3633 0.5626 0.8599 29 1 -0.3633 0.4635 -0.9172 30 1 3.1581 1.4096 0.0572 31 1 1.7643 1.9351 -0.9173 32 1 0.9342 1.7081 1.7725 33 1 1.3529 5.8858 3.4266 34 1 2.9910 -0.3287 -1.5834 35 1 1.3292 -0.8429 -2.0009 36 1 3.4402 -2.4172 -0.7585 37 1 1.7936 -2.9416 -1.2108 38 1 3.4935 -4.2392 -0.1945 39 1 1.8730 -8.1658 -0.5992 40 1 0.0357 -7.5799 0.9261 41 1 1.4488 -0.6345 2.0871 42 1 3.1077 -0.5212 1.4143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716876979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -55.000548 kcal Electronic energy + Delta-G solvation = -27338.301283 eV Core-core repulsion = 23258.536692 eV Total energy + Delta-G solvation = -4079.764591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02677 -41.71144 -40.11974 -38.89541 -37.50765 -36.65946 -34.51444 -33.02305 -32.22528 -31.39732 -30.54450 -28.11947 -27.58613 -25.56243 -24.40040 -23.77524 -23.22292 -21.10622 -20.44958 -19.67224 -18.61907 -18.13855 -17.76526 -17.40656 -16.91421 -16.73918 -16.55189 -16.52789 -15.70386 -15.60119 -15.19434 -15.09936 -14.87108 -14.72825 -14.51967 -14.17618 -14.02190 -13.74485 -13.72245 -13.47916 -13.29814 -13.02018 -12.86138 -12.67447 -12.64856 -12.36345 -12.22450 -12.14660 -11.94363 -11.70619 -11.59243 -11.48918 -11.05734 -10.99287 -10.39069 -9.84378 -9.70532 -9.28412 -8.04515 -5.35566 -0.52461 -0.17220 0.98797 1.33557 1.35948 1.41192 1.49579 1.73927 2.29930 2.44406 2.93580 3.20922 3.28001 3.40733 3.55151 3.59314 3.76654 3.82724 3.91455 3.97064 4.21825 4.23444 4.27875 4.29976 4.52848 4.58603 4.64484 4.71858 4.77593 4.81074 4.84343 4.91425 4.93888 5.02444 5.04773 5.09225 5.24864 5.29903 5.41336 5.49829 5.76392 6.20544 6.38563 6.92101 7.07300 7.85099 8.01207 9.17253 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003091 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.658028 B = 9056.070092 C =10187.114211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C 0.170 3.830 4 N -0.759 5.759 5 C -0.224 4.224 6 H 0.065 0.935 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.940 3.060 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.259 1.259 13 C -0.113 4.113 14 C 0.095 3.905 15 N -0.610 5.610 16 C 0.566 3.434 17 O -0.558 6.558 18 C -0.105 4.105 19 C -0.109 4.109 20 C 0.099 3.901 21 F -0.131 7.131 22 C -0.103 4.103 23 C -0.079 4.079 24 C -0.019 4.019 25 Cl -0.056 7.056 26 C 0.117 3.883 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.362 0.638 33 H 0.257 0.743 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.184 0.816 40 H 0.177 0.823 41 H 0.052 0.948 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -32.301 -12.605 34.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C 0.044 3.956 4 N -0.405 5.405 5 C -0.356 4.356 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.769 3.231 10 H -0.210 1.210 11 H -0.220 1.220 12 H -0.184 1.184 13 C -0.151 4.151 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.355 3.645 17 O -0.437 6.437 18 C -0.109 4.109 19 C -0.129 4.129 20 C 0.079 3.921 21 F -0.109 7.109 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.047 4.047 25 Cl -0.027 7.027 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.196 0.804 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.194 0.806 41 H 0.071 0.929 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.124 -32.085 -11.950 34.239 hybrid contribution -0.648 0.532 1.381 1.616 sum -0.524 -31.553 -10.569 33.280 Atomic orbital electron populations 1.21683 0.93969 1.00890 1.01888 1.21722 0.96114 0.94168 0.95794 1.20812 0.96267 0.89153 0.89337 1.42839 1.57418 1.10210 1.30023 1.19071 1.21850 0.87755 1.06884 0.91696 1.25337 1.02582 0.96469 1.00638 1.69846 1.50738 1.10865 1.31855 0.85639 0.79626 0.78018 0.79865 1.21011 1.21992 1.18425 1.22594 1.03422 0.92914 0.96210 1.22570 1.01804 0.99024 0.79199 1.48724 1.65769 1.06627 1.13084 1.18061 0.77297 0.84116 0.85011 1.90850 1.47314 1.86057 1.19489 1.19396 0.97432 0.93333 1.00767 1.21450 0.98581 0.97072 0.95748 1.17603 0.87878 0.93710 0.92900 1.91565 1.58094 1.92773 1.68472 1.21660 0.92051 1.01220 0.97217 1.21209 0.99467 0.93719 0.95380 1.21276 0.91691 0.95434 0.96321 1.98432 1.47166 1.93920 1.63137 1.22411 1.01211 0.79486 0.97410 0.92603 0.95018 0.90991 0.94574 0.94481 0.80407 0.93395 0.88171 0.88341 0.88628 0.88808 0.81919 0.79843 0.80585 0.92886 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.30 71.98 0.60 -3.02 16 2 C -0.08 -2.06 0.64 -51.09 -0.03 -2.09 16 3 C 0.17 5.93 5.11 86.38 0.44 6.37 16 4 N -0.76 -35.08 4.96 -343.46 -1.70 -36.78 16 5 C -0.22 -12.75 10.47 84.03 0.88 -11.87 16 6 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 7 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 8 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 9 Si 0.94 47.59 27.74 68.60 1.90 49.49 16 10 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 12 H -0.26 -12.18 6.52 99.48 0.65 -11.54 16 13 C -0.11 -1.89 6.09 31.48 0.19 -1.70 16 14 C 0.10 1.44 5.27 86.53 0.46 1.90 16 15 N -0.61 -14.74 3.19 -813.57 -2.60 -17.33 16 16 C 0.57 15.63 7.26 86.76 0.63 16.26 16 17 O -0.56 -20.33 15.32 -3.91 -0.06 -20.39 16 18 C -0.11 -2.13 5.44 -20.08 -0.11 -2.24 16 19 C -0.11 -1.55 8.19 22.57 0.18 -1.37 16 20 C 0.10 1.12 7.29 22.34 0.16 1.29 16 21 F -0.13 -1.59 17.26 44.97 0.78 -0.82 16 22 C -0.10 -0.80 10.02 22.36 0.22 -0.58 16 23 C -0.08 -0.84 9.81 22.25 0.22 -0.62 16 24 C -0.02 -0.36 6.33 22.60 0.14 -0.22 16 25 Cl -0.06 -1.32 26.71 -2.72 -0.07 -1.39 16 26 C 0.12 3.47 5.68 86.61 0.49 3.96 16 27 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 28 H 0.03 1.09 6.69 -2.39 -0.02 1.08 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 31 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.36 16.75 4.07 -92.71 -0.38 16.37 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.10 1.42 7.85 -2.39 -0.02 1.40 16 35 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16 36 H 0.10 1.01 7.07 -2.39 -0.02 0.99 16 37 H 0.09 1.10 7.25 -2.39 -0.02 1.08 16 38 H 0.16 1.86 5.91 -2.91 -0.02 1.84 16 39 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.05 1.93 7.71 -2.39 -0.02 1.91 16 42 H 0.08 2.36 8.02 -2.38 -0.02 2.34 16 Total: -1.00 -76.65 358.66 4.12 -72.53 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.62 Total: 15.01 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 4.95 Total: 3.03 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.00 Total: -117.47 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.39 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.90 Total: 49.49 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.39 kcal Total: -76.65 4.12 -72.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716876979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.525 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds