Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48505 * 109.46949 * 239.99934 * 3 2 1 5 5 H 1.48494 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47125 * 120.00067 * 3 2 1 7 7 C 1.38809 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99886 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99815 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46805 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00229 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00504 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47391 * 180.02562 * 14 13 11 16 16 C 1.53499 * 114.20781 * 184.99846 * 15 14 13 17 17 N 1.47067 * 87.98898 * 220.14564 * 16 15 14 18 18 C 1.34767 * 136.05780 * 207.08441 * 17 16 15 19 19 O 1.21280 * 120.00675 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99916 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47291 * 180.02562 * 20 18 17 22 22 N 1.28886 * 125.44383 * 269.97964 * 21 20 18 23 23 C 1.31038 * 107.91346 * 180.02562 * 22 21 20 24 24 N 1.33314 * 106.90496 * 0.02562 * 23 22 21 25 25 N 1.28775 * 125.45198 * 90.01944 * 21 20 18 26 26 C 1.47076 * 87.88133 * 27.34266 * 17 16 15 27 27 H 0.96998 * 119.99892 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47001 * 59.99819 * 10 9 7 29 29 H 1.09003 * 109.47093 * 299.99668 * 10 9 7 30 30 H 0.97006 * 119.99757 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46705 * 60.00201 * 14 13 11 32 32 H 1.09003 * 109.46792 * 300.00336 * 14 13 11 33 33 H 1.09005 * 113.28708 * 318.06605 * 15 14 13 34 34 H 1.09006 * 113.46374 * 105.36530 * 16 15 14 35 35 H 1.08996 * 113.52083 * 334.94332 * 16 15 14 36 36 H 1.09000 * 109.47305 * 59.99831 * 20 18 17 37 37 H 1.08998 * 109.46855 * 299.99640 * 20 18 17 38 38 H 1.08006 * 126.55447 * 179.97438 * 23 22 21 39 39 H 1.09001 * 113.46446 * 87.43472 * 26 17 16 40 40 H 1.08996 * 113.46636 * 217.87406 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3303 -7.7152 -0.0003 15 6 3.5023 -8.6986 -0.0001 16 6 3.0879 -10.1716 -0.1221 17 7 4.1287 -10.4923 0.8663 18 6 4.8934 -11.5632 1.1574 19 8 4.7844 -12.5811 0.5071 20 6 5.8831 -11.4963 2.2920 21 7 6.5855 -12.7770 2.4035 22 7 6.2073 -13.7766 3.1239 23 6 7.0835 -14.7387 2.9700 24 7 8.0121 -14.2862 2.1273 25 7 7.6798 -13.0840 1.7981 26 6 3.9631 -9.1323 1.4012 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7314 0.8894 29 1 3.1244 -3.7314 -0.8906 30 1 3.8008 -6.1835 -0.0006 31 1 1.7214 -7.8751 -0.8901 32 1 1.7219 -7.8753 0.8899 33 1 4.3112 -8.4050 -0.6692 34 1 3.2795 -10.5962 -1.1076 35 1 2.0765 -10.3697 0.2326 36 1 5.3554 -11.2886 3.2228 37 1 6.6045 -10.7024 2.0984 38 1 7.0588 -15.7121 3.4374 39 1 3.1823 -9.0557 2.1579 40 1 4.9002 -8.6717 1.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721381706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = 109.658921 kcal Electronic energy + Delta-G solvation = -25056.945044 eV Core-core repulsion = 21038.577043 eV Total energy + Delta-G solvation = -4018.368001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.77234 -41.23976 -39.38319 -38.62435 -35.44969 -34.69880 -33.52770 -32.48063 -31.72009 -30.09747 -28.88558 -26.72873 -26.06986 -25.44501 -24.40519 -23.53861 -21.59384 -20.61003 -19.90467 -18.54778 -18.33014 -17.92036 -17.06111 -16.97652 -16.42015 -16.30596 -16.06704 -15.63016 -15.30975 -14.86873 -14.83545 -14.29115 -14.15841 -13.97589 -13.67986 -13.37696 -13.21415 -13.11720 -12.80677 -12.57886 -12.42252 -11.99070 -11.88112 -11.60522 -11.41462 -11.26170 -11.10961 -11.10077 -11.08035 -10.81771 -10.46552 -9.88318 -9.57197 -9.46281 -9.12480 -9.04973 -8.30925 -6.56464 -6.26781 -3.98078 0.67352 1.19769 1.71941 1.83470 2.09660 2.88862 2.97175 3.19528 3.22027 3.25423 3.35987 3.50458 3.53647 3.73942 3.91029 4.06670 4.15381 4.20916 4.35847 4.39741 4.61911 4.67185 4.76701 4.93220 5.02464 5.06781 5.08538 5.25136 5.26140 5.30098 5.43913 5.55746 5.57290 5.72348 5.80327 6.05374 6.42922 6.86210 7.23524 7.53115 7.54963 7.90662 8.29573 8.47707 9.18547 10.80539 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.001508 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.313194 B =18565.925193 C =19210.551362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.740 5.740 14 C 0.133 3.867 15 C -0.134 4.134 16 C 0.118 3.882 17 N -0.644 5.644 18 C 0.535 3.465 19 O -0.519 6.519 20 C 0.118 3.882 21 N -0.130 5.130 22 N -0.302 5.302 23 C 0.148 3.852 24 N -0.283 5.283 25 N -0.048 5.048 26 C 0.097 3.903 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.238 0.762 39 H 0.100 0.900 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.030 -23.455 6.018 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.395 5.395 14 C 0.008 3.992 15 C -0.154 4.154 16 C -0.005 4.005 17 N -0.380 5.380 18 C 0.321 3.679 19 O -0.394 6.394 20 C -0.007 4.007 21 N -0.041 5.041 22 N -0.151 5.151 23 C -0.156 4.156 24 N -0.154 5.154 25 N -0.042 5.042 26 C -0.025 4.025 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.254 0.746 39 H 0.118 0.882 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.135 -23.943 5.357 26.943 hybrid contribution 2.166 0.892 0.404 2.378 sum 13.301 -23.050 5.761 27.229 Atomic orbital electron populations 1.70001 1.05963 1.27636 1.46627 1.24989 0.95022 0.99031 0.94455 0.86226 0.79249 0.81233 0.78803 1.19925 1.20790 1.19942 1.22823 0.94866 0.91641 1.59271 0.90950 1.85413 1.04825 0.96369 1.96742 1.23532 1.06662 0.95303 1.04968 1.20327 0.86492 0.86292 0.75043 1.90718 1.15381 1.85577 1.47253 1.45970 1.10019 1.05176 1.78339 1.21127 0.94370 0.80361 1.03313 1.23284 0.99895 0.94548 0.97640 1.23027 0.91955 0.91697 0.93779 1.49410 1.38746 1.13429 1.36456 1.19683 0.81518 0.82034 0.84654 1.90848 1.68239 1.29234 1.51046 1.21872 0.96545 0.80423 1.01852 1.49487 1.15353 1.12515 1.26736 1.74723 1.26023 0.96876 1.17491 1.27391 0.88557 1.01035 0.98573 1.75908 1.24389 1.01606 1.13499 1.79021 1.00186 1.09860 1.15158 1.23472 1.02637 0.79100 0.97331 0.92080 0.89176 0.89166 0.76698 0.90576 0.90815 0.86551 0.89499 0.88554 0.83503 0.83400 0.74614 0.88215 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.22 55.49 0.73 -24.70 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 11 C 0.53 8.55 7.85 -10.99 -0.09 8.47 16 12 O -0.52 -10.55 15.86 5.56 0.09 -10.46 16 13 N -0.74 -7.20 5.56 -60.30 -0.33 -7.53 16 14 C 0.13 0.98 5.59 -4.05 -0.02 0.95 16 15 C -0.13 -0.54 4.11 -89.97 -0.37 -0.91 16 16 C 0.12 0.61 8.19 -8.51 -0.07 0.54 16 17 N -0.64 -3.57 3.69 -185.03 -0.68 -4.25 16 18 C 0.54 4.26 8.15 -10.99 -0.09 4.17 16 19 O -0.52 -6.82 17.21 5.56 0.10 -6.72 16 20 C 0.12 0.57 6.91 -5.19 -0.04 0.53 16 21 N -0.13 -1.16 3.49 -11.72 -0.04 -1.20 16 22 N -0.30 -2.79 12.13 29.34 0.36 -2.44 16 23 C 0.15 1.19 13.26 -91.59 -1.21 -0.02 16 24 N -0.28 -3.02 12.50 29.33 0.37 -2.65 16 25 N -0.05 -0.52 13.25 60.35 0.80 0.28 16 26 C 0.10 0.27 8.00 -8.37 -0.07 0.20 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.09 1.51 8.14 -51.91 -0.42 1.08 16 30 H 0.40 2.64 8.47 -40.82 -0.35 2.29 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.57 7.81 -51.93 -0.41 0.17 16 33 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.15 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.15 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.24 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.10 0.23 7.88 -51.93 -0.41 -0.18 16 40 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -40.81 373.14 -6.70 -47.51 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -4.93 Total: -4.27 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.54 Total: -1.12 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.20 Total: -42.49 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.81 -6.70 -47.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.166 kcal (2) G-P(sol) polarization free energy of solvation -40.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds