Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48505 * 109.46949 * 239.99934 * 3 2 1 5 5 H 1.48494 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47125 * 120.00067 * 3 2 1 7 7 C 1.38809 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99886 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99815 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46805 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00229 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99962 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00504 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47391 * 180.02562 * 14 13 11 16 16 C 1.53499 * 114.20781 * 184.99846 * 15 14 13 17 17 N 1.47067 * 87.98898 * 220.14564 * 16 15 14 18 18 C 1.34767 * 136.05780 * 207.08441 * 17 16 15 19 19 O 1.21280 * 120.00675 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99916 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47291 * 180.02562 * 20 18 17 22 22 N 1.28886 * 125.44383 * 269.97964 * 21 20 18 23 23 C 1.31038 * 107.91346 * 180.02562 * 22 21 20 24 24 N 1.33314 * 106.90496 * 0.02562 * 23 22 21 25 25 N 1.28775 * 125.45198 * 90.01944 * 21 20 18 26 26 C 1.47076 * 87.88133 * 27.34266 * 17 16 15 27 27 H 0.96998 * 119.99892 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47001 * 59.99819 * 10 9 7 29 29 H 1.09003 * 109.47093 * 299.99668 * 10 9 7 30 30 H 0.97006 * 119.99757 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46705 * 60.00201 * 14 13 11 32 32 H 1.09003 * 109.46792 * 300.00336 * 14 13 11 33 33 H 1.09005 * 113.28708 * 318.06605 * 15 14 13 34 34 H 1.09006 * 113.46374 * 105.36530 * 16 15 14 35 35 H 1.08996 * 113.52083 * 334.94332 * 16 15 14 36 36 H 1.09000 * 109.47305 * 59.99831 * 20 18 17 37 37 H 1.08998 * 109.46855 * 299.99640 * 20 18 17 38 38 H 1.08006 * 126.55447 * 179.97438 * 23 22 21 39 39 H 1.09001 * 113.46446 * 87.43472 * 26 17 16 40 40 H 1.08996 * 113.46636 * 217.87406 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3303 -7.7152 -0.0003 15 6 3.5023 -8.6986 -0.0001 16 6 3.0879 -10.1716 -0.1221 17 7 4.1287 -10.4923 0.8663 18 6 4.8934 -11.5632 1.1574 19 8 4.7844 -12.5811 0.5071 20 6 5.8831 -11.4963 2.2920 21 7 6.5855 -12.7770 2.4035 22 7 6.2073 -13.7766 3.1239 23 6 7.0835 -14.7387 2.9700 24 7 8.0121 -14.2862 2.1273 25 7 7.6798 -13.0840 1.7981 26 6 3.9631 -9.1323 1.4012 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7314 0.8894 29 1 3.1244 -3.7314 -0.8906 30 1 3.8008 -6.1835 -0.0006 31 1 1.7214 -7.8751 -0.8901 32 1 1.7219 -7.8753 0.8899 33 1 4.3112 -8.4050 -0.6692 34 1 3.2795 -10.5962 -1.1076 35 1 2.0765 -10.3697 0.2326 36 1 5.3554 -11.2886 3.2228 37 1 6.6045 -10.7024 2.0984 38 1 7.0588 -15.7121 3.4374 39 1 3.1823 -9.0557 2.1579 40 1 4.9002 -8.6717 1.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721381706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = 76.985402 kcal Electronic energy + Delta-G solvation = -25058.361875 eV Core-core repulsion = 21038.577043 eV Total energy + Delta-G solvation = -4019.784831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.39733 -41.73203 -40.46985 -39.34917 -36.04982 -35.69104 -34.54944 -34.16340 -32.46440 -31.07129 -29.69512 -27.67602 -27.05688 -26.66990 -25.02434 -24.16010 -22.13838 -21.72209 -20.45420 -19.76314 -19.07058 -18.82708 -17.81666 -17.61013 -17.55596 -16.93249 -16.84701 -16.76371 -16.48396 -16.08889 -15.88337 -15.42424 -14.97831 -14.80269 -14.57867 -14.36423 -14.15950 -13.80582 -13.57689 -13.53062 -13.13154 -13.07386 -13.01684 -12.83510 -12.60770 -12.44073 -12.26839 -12.08810 -11.79409 -11.70742 -11.65595 -11.09790 -11.07872 -10.87287 -10.22287 -10.02937 -9.96051 -8.62050 -8.31528 -6.08745 0.03424 0.74284 1.19192 1.22004 1.31222 1.46011 1.50450 1.58955 1.66222 1.70162 2.29040 2.35024 2.96850 3.02881 3.11840 3.22879 3.38590 3.43958 3.79554 3.83726 3.90941 3.97198 4.11659 4.21722 4.27981 4.38919 4.55752 4.58440 4.59819 4.64817 4.68897 4.75583 4.79181 4.86315 5.03480 5.22099 5.45099 5.51661 6.22707 6.41606 6.60033 6.70547 7.10275 7.25989 7.34242 8.77166 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029303 B = 0.001508 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.313194 B =18565.925193 C =19210.551362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.134 3.866 15 C -0.117 4.117 16 C 0.108 3.892 17 N -0.640 5.640 18 C 0.531 3.469 19 O -0.583 6.583 20 C 0.112 3.888 21 N -0.126 5.126 22 N -0.318 5.318 23 C 0.149 3.851 24 N -0.313 5.313 25 N -0.071 5.071 26 C 0.102 3.898 27 H 0.270 0.730 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.419 0.581 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.275 0.725 39 H 0.111 0.889 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.545 -23.059 7.156 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.363 5.363 14 C 0.009 3.991 15 C -0.136 4.136 16 C -0.015 4.015 17 N -0.374 5.374 18 C 0.319 3.681 19 O -0.463 6.463 20 C -0.010 4.010 21 N -0.039 5.039 22 N -0.167 5.167 23 C -0.153 4.153 24 N -0.183 5.183 25 N -0.065 5.065 26 C -0.019 4.019 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.199 0.801 37 H 0.201 0.799 38 H 0.290 0.710 39 H 0.129 0.871 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.710 -23.538 6.503 28.005 hybrid contribution 1.364 0.661 0.030 1.516 sum 15.074 -22.877 6.533 28.165 Atomic orbital electron populations 1.70174 1.07967 1.28579 1.48075 1.26092 0.95899 1.03247 0.93827 0.85042 0.77816 0.75896 0.79487 1.18749 1.20678 1.18588 1.23190 0.95388 0.92088 1.58741 0.89780 1.85597 1.10891 0.99327 1.97061 1.23384 1.03354 0.94489 1.06936 1.19993 0.86207 0.86673 0.75137 1.90712 1.17612 1.86101 1.50167 1.45640 1.10374 1.04760 1.75540 1.21228 0.95686 0.79284 1.02868 1.23097 0.98756 0.92485 0.99246 1.23141 0.92406 0.92437 0.93517 1.49449 1.37812 1.13899 1.36260 1.20192 0.81764 0.81452 0.84668 1.90820 1.70305 1.31703 1.53462 1.22368 0.96832 0.79801 1.02034 1.49825 1.14901 1.13317 1.25813 1.74705 1.26503 0.97400 1.18142 1.28188 0.87416 1.02120 0.97613 1.75863 1.25764 1.02020 1.14693 1.78936 1.01313 1.10299 1.15981 1.23687 1.04725 0.77026 0.96478 0.92093 0.86866 0.87279 0.74288 0.91808 0.90781 0.85148 0.90640 0.88070 0.80143 0.79881 0.70982 0.87086 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.54 13.22 21.65 0.29 -54.25 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.55 -29.81 9.50 67.96 0.65 -29.16 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.16 -8.18 20.57 -56.49 -1.16 -9.34 16 10 C -0.13 -4.51 6.16 71.24 0.44 -4.07 16 11 C 0.53 16.37 7.85 87.66 0.69 17.05 16 12 O -0.57 -23.35 15.86 -3.03 -0.05 -23.40 16 13 N -0.71 -11.62 5.56 -463.07 -2.57 -14.19 16 14 C 0.13 1.64 5.59 86.38 0.48 2.12 16 15 C -0.12 -0.56 4.11 -10.37 -0.04 -0.60 16 16 C 0.11 0.94 8.19 83.18 0.68 1.62 16 17 N -0.64 -5.49 3.69 -857.71 -3.16 -8.66 16 18 C 0.53 7.62 8.15 87.66 0.71 8.33 16 19 O -0.58 -15.44 17.21 -3.03 -0.05 -15.49 16 20 C 0.11 0.78 6.91 85.64 0.59 1.37 16 21 N -0.13 -2.08 3.49 -190.99 -0.67 -2.74 16 22 N -0.32 -5.51 12.13 -61.09 -0.74 -6.25 16 23 C 0.15 2.26 13.26 180.69 2.40 4.66 16 24 N -0.31 -6.57 12.50 -61.11 -0.76 -7.34 16 25 N -0.07 -1.50 13.25 37.02 0.49 -1.01 16 26 C 0.10 0.14 8.00 83.27 0.67 0.80 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 29 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.42 3.66 8.47 -92.70 -0.79 2.88 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.98 7.81 -2.39 -0.02 0.97 16 33 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.84 16 35 H 0.10 0.79 8.11 -2.39 -0.02 0.78 16 36 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.18 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.27 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.11 0.02 7.88 -2.39 -0.02 0.00 16 40 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: -1.00 -94.90 373.14 1.67 -93.23 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 0.31 Total: 2.07 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.73 Total: 3.37 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -7.13 Total: -94.44 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.10 Total: -38.89 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -94.90 1.67 -93.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.218 kcal (2) G-P(sol) polarization free energy of solvation -94.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds