Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46756 * 300.00253 * 3 2 1 6 6 H 1.48497 * 109.46986 * 60.00200 * 3 2 1 7 7 C 1.38809 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99303 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99706 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46827 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00032 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47113 * 34.99824 * 14 13 11 16 16 C 1.52990 * 109.47168 * 155.00309 * 14 13 11 17 17 N 1.46902 * 109.47180 * 304.99512 * 16 14 13 18 18 C 1.46901 * 111.00082 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46801 * 180.02562 * 18 17 16 20 20 C 1.38425 * 122.53762 * 89.99949 * 19 18 17 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97222 * 19 18 17 24 24 C 1.53007 * 109.46926 * 274.99920 * 14 13 11 25 25 C 1.53004 * 117.49907 * 128.74460 * 24 14 13 26 26 C 1.53004 * 117.49845 * 60.08826 * 24 14 13 27 27 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46976 * 59.99856 * 10 9 7 29 29 H 1.08997 * 109.47203 * 299.99768 * 10 9 7 30 30 H 0.97003 * 119.99930 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47138 * 185.00062 * 16 14 13 32 32 H 1.08995 * 109.47660 * 64.99798 * 16 14 13 33 33 H 1.00896 * 110.99690 * 56.04714 * 17 16 14 34 34 H 1.08999 * 109.47322 * 60.00133 * 18 17 16 35 35 H 1.09003 * 109.47232 * 299.99766 * 18 17 16 36 36 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 37 37 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 39 39 H 1.08999 * 115.54883 * 274.41765 * 24 14 13 40 40 H 1.09003 * 117.49835 * 0.02562 * 25 24 14 41 41 H 1.08994 * 117.50137 * 145.01810 * 25 24 14 42 42 H 1.09000 * 117.49628 * 214.98091 * 26 24 14 43 43 H 1.09005 * 117.49963 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5156 -3.8915 -0.0029 11 6 1.9871 -5.3028 -0.0036 12 8 0.7908 -5.5023 -0.0038 13 7 2.8438 -6.3432 -0.0049 14 6 2.3300 -7.7152 -0.0061 15 1 1.4140 -7.7596 -0.5952 16 6 3.3752 -8.6506 -0.6169 17 7 3.7477 -8.1636 -1.9519 18 6 4.7516 -9.0396 -2.5707 19 6 5.1084 -8.5090 -3.9353 20 6 6.1367 -7.6044 -4.1368 21 6 6.3211 -7.2366 -5.4057 22 16 5.1513 -8.0551 -6.4330 23 6 4.4578 -8.8757 -5.0404 24 6 2.0340 -8.1501 1.4307 25 6 0.6519 -8.7393 1.7199 26 6 1.0052 -7.3356 2.2176 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7322 0.8872 29 1 3.1242 -3.7307 -0.8928 30 1 3.8006 -6.1836 -0.0051 31 1 2.9598 -9.6550 -0.6995 32 1 4.2588 -8.6742 0.0208 33 1 4.0755 -7.2103 -1.9104 34 1 4.3454 -10.0465 -2.6668 35 1 5.6448 -9.0662 -1.9465 36 1 6.7410 -7.2220 -3.3275 37 1 7.0730 -6.5417 -5.7495 38 1 3.6309 -9.5696 -5.0748 39 1 2.8807 -8.5587 1.9821 40 1 -0.0463 -8.8175 0.8865 41 1 0.5893 -9.5354 2.4617 42 1 1.1750 -7.2087 3.2868 43 1 0.5396 -6.4896 1.7119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723276783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = 23.701426 kcal Electronic energy + Delta-G solvation = -24035.297699 eV Core-core repulsion = 20527.202764 eV Total energy + Delta-G solvation = -3508.094935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82825 -38.71428 -37.20885 -35.75831 -33.58293 -32.41604 -30.77505 -29.55404 -28.07305 -25.84024 -25.43529 -23.07110 -22.47853 -22.11464 -20.81782 -20.19494 -19.01269 -17.91886 -17.73767 -16.75114 -16.24558 -15.86821 -15.68154 -15.14733 -14.92567 -14.79429 -14.65459 -14.01854 -13.70566 -13.63782 -13.20186 -13.12243 -12.95250 -12.67360 -12.51031 -12.16755 -12.05142 -11.98228 -11.77185 -11.52541 -11.18297 -11.05809 -10.99907 -10.96513 -10.75300 -10.27581 -10.11968 -9.77983 -9.30479 -9.06281 -9.04036 -8.81860 -8.76448 -8.55000 -8.21014 -6.47464 -6.20634 -3.90364 0.78807 1.44242 1.76285 2.40121 3.02444 3.11664 3.22114 3.28380 3.32639 3.63990 3.95914 4.08774 4.21595 4.58795 4.65963 4.74161 4.93679 4.96594 4.99293 5.10232 5.14731 5.15889 5.20038 5.26606 5.29112 5.34662 5.38579 5.51540 5.65817 5.74812 5.79280 5.87326 5.92912 6.11048 6.14155 6.16183 6.20622 6.22674 6.54588 6.65459 6.73583 7.08378 7.61026 7.73797 8.36537 8.67157 9.24989 10.86808 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.007931 B = 0.002982 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.684991 B = 9386.454836 C =12290.752760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.513 6.513 13 N -0.730 5.730 14 C 0.180 3.820 15 H 0.097 0.903 16 C 0.058 3.942 17 N -0.683 5.683 18 C 0.120 3.880 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.212 4.212 22 S 0.093 5.907 23 C -0.186 4.186 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.177 4.177 27 H 0.268 0.732 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.346 0.654 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.286 -21.674 -5.338 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.325 3.675 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.075 3.925 15 H 0.115 0.885 16 C -0.072 4.072 17 N -0.315 5.315 18 C -0.011 4.011 19 C -0.119 4.119 20 C -0.161 4.161 21 C -0.347 4.347 22 S 0.357 5.643 23 C -0.323 4.323 24 C -0.194 4.194 25 C -0.209 4.209 26 C -0.214 4.214 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.295 -22.196 -7.240 25.516 hybrid contribution 3.616 1.644 2.068 4.478 sum 13.911 -20.552 -5.171 25.351 Atomic orbital electron populations 1.70024 1.05930 1.27306 1.46995 1.24985 0.95011 0.98994 0.94586 0.86134 0.79590 0.81980 0.77896 1.19651 1.20569 1.20586 1.22912 0.94916 0.91742 1.58749 0.90967 1.85378 1.04845 0.96219 1.96684 1.23535 1.06583 0.95629 1.04730 1.20203 0.86584 0.86105 0.74632 1.90630 1.15342 1.85388 1.47370 1.46019 1.09458 1.05355 1.77533 1.20467 0.98105 0.80629 0.93305 0.88510 1.22211 0.97254 0.99235 0.88514 1.60402 1.43634 1.06290 1.21176 1.20553 0.93419 0.96841 0.90274 1.18793 0.97279 1.00112 0.95736 1.20090 0.99568 0.99478 0.96990 1.25583 1.05130 1.07173 0.96838 1.84345 1.28505 1.40242 1.11250 1.25499 1.05140 1.06692 0.94968 1.22635 0.93436 1.06220 0.97084 1.22910 0.97306 0.97193 1.03540 1.23331 1.02115 0.96273 0.99672 0.92262 0.89424 0.89382 0.77478 0.89448 0.94713 0.83444 0.90110 0.94278 0.84471 0.81894 0.81776 0.88325 0.88672 0.89292 0.89589 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.83 16 11 C 0.54 9.63 7.18 -10.99 -0.08 9.55 16 12 O -0.51 -11.01 12.89 5.56 0.07 -10.94 16 13 N -0.73 -9.29 4.34 -53.81 -0.23 -9.52 16 14 C 0.18 2.07 2.58 -67.93 -0.18 1.89 16 15 H 0.10 1.39 7.34 -51.93 -0.38 1.01 16 16 C 0.06 0.49 5.28 -3.83 -0.02 0.47 16 17 N -0.68 -6.37 6.48 -115.06 -0.75 -7.12 16 18 C 0.12 0.94 5.94 -4.97 -0.03 0.92 16 19 C -0.11 -0.96 5.31 -106.25 -0.56 -1.52 16 20 C -0.13 -1.14 9.98 -41.21 -0.41 -1.55 16 21 C -0.21 -1.81 11.23 29.04 0.33 -1.48 16 22 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16 23 C -0.19 -1.69 10.98 29.04 0.32 -1.37 16 24 C -0.17 -1.94 5.36 -90.61 -0.49 -2.43 16 25 C -0.17 -1.95 10.18 -26.69 -0.27 -2.22 16 26 C -0.18 -2.44 9.74 -26.69 -0.26 -2.70 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.39 3.94 8.15 -40.82 -0.33 3.61 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.35 3.41 7.57 -39.29 -0.30 3.11 16 34 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.04 0.27 8.13 -51.93 -0.42 -0.15 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 40 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.12 2.20 5.02 -51.93 -0.26 1.94 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -33.31 386.24 -11.63 -44.94 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.30 Total: 7.48 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.23 Total: -16.19 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.25 Total: -42.05 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -4.72 Total: -5.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.31 -11.63 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723276783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.644 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds