Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46756 * 300.00253 * 3 2 1 6 6 H 1.48497 * 109.46986 * 60.00200 * 3 2 1 7 7 C 1.38809 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99303 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99706 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46827 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00032 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47113 * 34.99824 * 14 13 11 16 16 C 1.52990 * 109.47168 * 155.00309 * 14 13 11 17 17 N 1.46902 * 109.47180 * 304.99512 * 16 14 13 18 18 C 1.46901 * 111.00082 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46801 * 180.02562 * 18 17 16 20 20 C 1.38425 * 122.53762 * 89.99949 * 19 18 17 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97222 * 19 18 17 24 24 C 1.53007 * 109.46926 * 274.99920 * 14 13 11 25 25 C 1.53004 * 117.49907 * 128.74460 * 24 14 13 26 26 C 1.53004 * 117.49845 * 60.08826 * 24 14 13 27 27 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46976 * 59.99856 * 10 9 7 29 29 H 1.08997 * 109.47203 * 299.99768 * 10 9 7 30 30 H 0.97003 * 119.99930 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47138 * 185.00062 * 16 14 13 32 32 H 1.08995 * 109.47660 * 64.99798 * 16 14 13 33 33 H 1.00896 * 110.99690 * 56.04714 * 17 16 14 34 34 H 1.08999 * 109.47322 * 60.00133 * 18 17 16 35 35 H 1.09003 * 109.47232 * 299.99766 * 18 17 16 36 36 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 37 37 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 39 39 H 1.08999 * 115.54883 * 274.41765 * 24 14 13 40 40 H 1.09003 * 117.49835 * 0.02562 * 25 24 14 41 41 H 1.08994 * 117.50137 * 145.01810 * 25 24 14 42 42 H 1.09000 * 117.49628 * 214.98091 * 26 24 14 43 43 H 1.09005 * 117.49963 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5156 -3.8915 -0.0029 11 6 1.9871 -5.3028 -0.0036 12 8 0.7908 -5.5023 -0.0038 13 7 2.8438 -6.3432 -0.0049 14 6 2.3300 -7.7152 -0.0061 15 1 1.4140 -7.7596 -0.5952 16 6 3.3752 -8.6506 -0.6169 17 7 3.7477 -8.1636 -1.9519 18 6 4.7516 -9.0396 -2.5707 19 6 5.1084 -8.5090 -3.9353 20 6 6.1367 -7.6044 -4.1368 21 6 6.3211 -7.2366 -5.4057 22 16 5.1513 -8.0551 -6.4330 23 6 4.4578 -8.8757 -5.0404 24 6 2.0340 -8.1501 1.4307 25 6 0.6519 -8.7393 1.7199 26 6 1.0052 -7.3356 2.2176 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7322 0.8872 29 1 3.1242 -3.7307 -0.8928 30 1 3.8006 -6.1836 -0.0051 31 1 2.9598 -9.6550 -0.6995 32 1 4.2588 -8.6742 0.0208 33 1 4.0755 -7.2103 -1.9104 34 1 4.3454 -10.0465 -2.6668 35 1 5.6448 -9.0662 -1.9465 36 1 6.7410 -7.2220 -3.3275 37 1 7.0730 -6.5417 -5.7495 38 1 3.6309 -9.5696 -5.0748 39 1 2.8807 -8.5587 1.9821 40 1 -0.0463 -8.8175 0.8865 41 1 0.5893 -9.5354 2.4617 42 1 1.1750 -7.2087 3.2868 43 1 0.5396 -6.4896 1.7119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723276783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = 1.718374 kcal Electronic energy + Delta-G solvation = -24036.250955 eV Core-core repulsion = 20527.202764 eV Total energy + Delta-G solvation = -3509.048191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03658 -39.41188 -38.33283 -36.55986 -34.71355 -34.56767 -31.77920 -30.60102 -29.13295 -27.64638 -26.54834 -23.75479 -23.29978 -23.03535 -22.06416 -21.28574 -19.86608 -19.60398 -18.48106 -17.98750 -17.32962 -16.94969 -16.87581 -16.76230 -16.05442 -15.87826 -15.73391 -15.49173 -14.77399 -14.69649 -14.50068 -14.21336 -13.83869 -13.62055 -13.52534 -13.23717 -13.14688 -12.93595 -12.91841 -12.77436 -12.61677 -12.55746 -12.36448 -12.23349 -11.69892 -11.62365 -11.26863 -11.15028 -11.08669 -10.74204 -10.24378 -9.97025 -9.69211 -9.44859 -9.21532 -8.63758 -8.34039 -6.10888 0.13489 0.79885 1.11950 1.28439 1.41086 1.47996 1.58780 1.68956 1.75817 2.24226 2.29775 3.00137 3.00803 3.24553 3.35710 3.81437 3.98172 4.02677 4.06795 4.10926 4.16626 4.26932 4.31307 4.34185 4.40732 4.52120 4.53619 4.57911 4.73196 4.78684 4.81137 4.84962 4.94133 5.09547 5.16791 5.31074 5.41757 5.42726 5.52108 5.57009 5.58787 6.04511 6.20590 6.38085 6.57104 7.07546 7.34868 8.75305 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.007931 B = 0.002982 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.684991 B = 9386.454836 C =12290.752760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.554 6.554 13 N -0.704 5.704 14 C 0.181 3.819 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.699 5.699 18 C 0.125 3.875 19 C -0.113 4.113 20 C -0.139 4.139 21 C -0.219 4.219 22 S 0.079 5.921 23 C -0.201 4.201 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.207 4.207 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.410 0.590 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.342 0.658 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.153 0.847 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.403 -22.794 -4.770 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.432 6.432 13 N -0.357 5.357 14 C 0.076 3.924 15 H 0.082 0.918 16 C -0.060 4.060 17 N -0.331 5.331 18 C -0.006 4.006 19 C -0.126 4.126 20 C -0.170 4.170 21 C -0.354 4.354 22 S 0.342 5.658 23 C -0.337 4.337 24 C -0.175 4.175 25 C -0.197 4.197 26 C -0.244 4.244 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.171 0.829 37 H 0.196 0.804 38 H 0.189 0.811 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.461 -23.360 -6.676 27.775 hybrid contribution 2.657 1.875 1.871 3.752 sum 16.118 -21.485 -4.805 27.285 Atomic orbital electron populations 1.70187 1.07951 1.28481 1.48150 1.26110 0.95945 1.03266 0.93818 0.84928 0.78640 0.76458 0.78065 1.18032 1.19975 1.19929 1.23242 0.95298 0.92183 1.58630 0.90081 1.85556 1.10434 0.99021 1.96996 1.23370 1.03520 0.94899 1.06331 1.19891 0.86383 0.86358 0.74823 1.90639 1.17233 1.85779 1.49557 1.45719 1.09764 1.04870 1.75387 1.20559 0.98081 0.80132 0.93635 0.91788 1.22139 0.97036 0.98483 0.88389 1.60379 1.44592 1.06383 1.21779 1.20567 0.93714 0.96632 0.89675 1.19028 0.97228 1.00063 0.96284 1.20339 0.99730 0.99430 0.97483 1.25873 1.05305 1.07381 0.96879 1.84368 1.28998 1.40618 1.11770 1.25708 1.05656 1.07198 0.95157 1.22717 0.94059 1.04407 0.96291 1.22957 0.97199 0.96143 1.03399 1.23162 1.04890 0.96345 0.99996 0.92046 0.87647 0.87665 0.75360 0.88158 0.92142 0.83921 0.89386 0.92593 0.82913 0.80365 0.81137 0.85312 0.89843 0.86687 0.88922 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.29 9.50 67.96 0.65 -30.64 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 10 C -0.13 -5.11 6.16 71.23 0.44 -4.68 16 11 C 0.54 19.35 7.18 87.66 0.63 19.98 16 12 O -0.55 -24.86 12.89 -3.04 -0.04 -24.90 16 13 N -0.70 -16.77 4.34 -442.54 -1.92 -18.69 16 14 C 0.18 3.83 2.58 44.99 0.12 3.95 16 15 H 0.06 1.84 7.34 -2.39 -0.02 1.82 16 16 C 0.07 0.93 5.28 86.30 0.46 1.39 16 17 N -0.70 -11.21 6.48 -517.94 -3.36 -14.56 16 18 C 0.12 1.59 5.94 85.56 0.51 2.10 16 19 C -0.11 -1.82 5.31 -20.92 -0.11 -1.93 16 20 C -0.14 -2.15 9.98 21.22 0.21 -1.94 16 21 C -0.22 -3.44 11.23 66.72 0.75 -2.69 16 22 S 0.08 1.33 23.34 -56.49 -1.32 0.01 16 23 C -0.20 -3.43 10.98 66.72 0.73 -2.70 16 24 C -0.16 -3.11 5.36 -10.79 -0.06 -3.16 16 25 C -0.16 -3.40 10.18 30.62 0.31 -3.09 16 26 C -0.21 -5.68 9.74 30.62 0.30 -5.39 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 29 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 30 H 0.41 7.00 8.15 -92.71 -0.76 6.25 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.34 5.84 7.57 -89.70 -0.68 5.16 16 34 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 35 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.13 1.88 8.11 -2.39 -0.02 1.87 16 40 H 0.08 1.97 8.05 -2.39 -0.02 1.96 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 3.06 5.02 -2.38 -0.01 3.05 16 Total: -1.00 -76.14 386.24 -0.49 -76.63 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.40 Total: 28.57 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 5.39 Total: -27.57 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.99 Total: -89.25 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -2.48 Total: -9.33 kcal Total: -76.14 -0.49 -76.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723276783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.350 kcal (2) G-P(sol) polarization free energy of solvation -76.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds