Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 110.88446 * 2 1 4 4 N 1.46506 * 109.47259 * 303.88200 * 3 2 1 5 5 C 1.36936 * 120.00116 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00255 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99893 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99743 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47170 * 90.00565 * 9 7 5 11 11 H 1.48505 * 109.46781 * 209.99981 * 9 7 5 12 12 H 1.48497 * 109.47199 * 329.99867 * 9 7 5 13 13 C 1.55150 * 111.00672 * 123.87824 * 2 1 3 14 14 C 1.54326 * 102.93955 * 82.60975 * 13 2 1 15 15 N 1.47020 * 107.27325 * 22.19481 * 14 13 2 16 16 C 1.34776 * 125.65074 * 181.02029 * 15 14 13 17 17 O 1.21579 * 119.99993 * 184.85804 * 16 15 14 18 18 C 1.47627 * 120.00024 * 4.86385 * 16 15 14 19 19 C 1.39702 * 120.15178 * 313.16448 * 18 16 15 20 20 C 1.37794 * 119.89226 * 180.29558 * 19 18 16 21 21 C 1.38615 * 120.20108 * 359.43185 * 20 19 18 22 22 Cl 1.73601 * 119.84245 * 180.27476 * 21 20 19 23 23 C 1.38355 * 120.31683 * 0.29782 * 21 20 19 24 24 C 1.38262 * 120.09862 * 359.97438 * 23 21 20 25 25 F 1.35095 * 120.09978 * 179.97438 * 24 23 21 26 26 C 1.47423 * 108.69965 * 1.28449 * 15 14 13 27 27 H 1.08998 * 109.46685 * 296.11864 * 1 2 3 28 28 H 1.08994 * 109.46991 * 56.11649 * 1 2 3 29 29 H 1.08997 * 109.46877 * 176.11921 * 1 2 3 30 30 H 1.09000 * 109.47373 * 63.87764 * 3 2 1 31 31 H 1.08997 * 109.47068 * 183.88591 * 3 2 1 32 32 H 0.97002 * 119.99921 * 0.02562 * 4 3 2 33 33 H 0.96991 * 120.00027 * 180.02562 * 8 7 5 34 34 H 1.08999 * 110.72183 * 324.25334 * 13 2 1 35 35 H 1.08995 * 110.87413 * 201.04267 * 13 2 1 36 36 H 1.08999 * 109.88412 * 262.77167 * 14 13 2 37 37 H 1.09001 * 109.87944 * 141.61314 * 14 13 2 38 38 H 1.08008 * 120.05659 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.90187 * 179.69996 * 20 19 18 40 40 H 1.07995 * 119.95412 * 179.97438 * 23 21 20 41 41 H 1.08998 * 110.36812 * 94.48523 * 26 15 14 42 42 H 1.09006 * 110.36785 * 216.80252 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 7 1.5302 2.1603 -1.1467 5 6 1.8794 3.4680 -1.3541 6 1 2.5571 3.9606 -0.6727 7 6 1.3630 4.1603 -2.4409 8 7 0.5375 3.5598 -3.2718 9 14 1.8400 5.9440 -2.7243 10 1 3.0526 6.0023 -3.5795 11 1 0.7237 6.6535 -3.3993 12 1 2.1226 6.5940 -1.4194 13 6 2.0862 -0.8074 1.2025 14 6 2.0295 -2.2642 0.6964 15 7 2.0154 -2.2157 -0.7729 16 6 1.9494 -3.2828 -1.5935 17 8 2.0331 -3.1305 -2.7968 18 6 1.7755 -4.6367 -1.0312 19 6 2.5582 -5.0542 0.0480 20 6 2.3956 -6.3212 0.5648 21 6 1.4497 -7.1785 0.0245 22 17 1.2478 -8.7702 0.6874 23 6 0.6661 -6.7719 -1.0407 24 6 0.8224 -5.5053 -1.5728 25 9 0.0576 -5.1084 -2.6133 26 6 2.0916 -0.8068 -1.2001 27 1 -0.3632 0.4524 0.9227 28 1 -0.3633 0.5729 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 1.7823 1.9303 0.9227 31 1 3.1629 1.4034 -0.0696 32 1 0.9211 1.7180 -1.7586 33 1 0.1770 4.0434 -4.0313 34 1 1.4521 -0.6789 2.0796 35 1 3.1128 -0.5159 1.4244 36 1 1.1230 -2.7480 1.0602 37 1 2.9075 -2.8107 1.0409 38 1 3.2932 -4.3868 0.4734 39 1 3.0040 -6.6458 1.3960 40 1 -0.0687 -7.4447 -1.4573 41 1 3.1260 -0.5259 -1.3982 42 1 1.4775 -0.6452 -2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724228145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -42.343816 kcal Electronic energy + Delta-G solvation = -27063.241809 eV Core-core repulsion = 22984.026055 eV Total energy + Delta-G solvation = -4079.215754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.25841 -40.62495 -39.22778 -37.92356 -36.92882 -34.89892 -32.89324 -31.61708 -31.09558 -30.45250 -29.18677 -26.82805 -25.75831 -24.38254 -23.36982 -23.06045 -21.99816 -20.05608 -18.94040 -18.12982 -17.64591 -17.14113 -16.89761 -16.26397 -15.90022 -15.81480 -15.55548 -14.63047 -14.60465 -14.37719 -14.00506 -13.94755 -13.74987 -13.61089 -13.35068 -13.07784 -12.89935 -12.58894 -12.35116 -12.08226 -11.92513 -11.86239 -11.74949 -11.64193 -11.54119 -11.01534 -10.83974 -10.57359 -10.46074 -10.35825 -10.08373 -9.94619 -9.63834 -9.56599 -9.21763 -8.87808 -8.63083 -6.92326 -5.75547 -3.04750 0.17456 0.54762 1.44005 2.40080 2.75875 3.07912 3.44534 3.49298 3.51317 3.70155 4.04567 4.13378 4.37326 4.54242 4.56812 4.58313 4.72025 4.84895 4.93482 5.22466 5.24848 5.26812 5.38977 5.45159 5.51342 5.53362 5.58643 5.66328 5.81624 5.95277 6.02987 6.05486 6.10147 6.13663 6.21068 6.33695 6.44649 6.62654 6.71971 6.80916 7.42281 7.70274 8.01451 8.42850 9.54197 10.10950 10.45150 11.47148 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.002327 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.263972 B =12029.552136 C =12617.179007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.122 4.122 14 C 0.098 3.902 15 N -0.607 5.607 16 C 0.570 3.430 17 O -0.517 6.517 18 C -0.150 4.150 19 C -0.051 4.051 20 C -0.125 4.125 21 C 0.008 3.992 22 Cl -0.052 7.052 23 C -0.153 4.153 24 C 0.164 3.836 25 F -0.113 7.113 26 C 0.121 3.879 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -24.559 13.154 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.160 4.160 14 C -0.025 4.025 15 N -0.341 5.341 16 C 0.356 3.644 17 O -0.393 6.393 18 C -0.154 4.154 19 C -0.070 4.070 20 C -0.144 4.144 21 C -0.020 4.020 22 Cl -0.023 7.023 23 C -0.172 4.172 24 C 0.143 3.857 25 F -0.091 7.091 26 C 0.000 4.000 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.484 -24.490 12.475 27.596 hybrid contribution -0.128 0.715 -0.520 0.893 sum 2.356 -23.775 11.956 26.716 Atomic orbital electron populations 1.21682 0.93220 1.00761 1.03136 1.22006 0.96573 0.96037 0.93226 1.20575 0.95638 0.87609 0.92002 1.42409 1.55961 1.10843 1.28395 1.19195 1.22503 0.87859 1.07662 0.91196 1.24745 0.99926 0.98345 0.97880 1.69652 1.35418 1.36334 1.16590 0.86198 0.77443 0.84884 0.77686 1.21737 1.21808 1.20802 1.22729 1.02482 0.92508 0.98330 1.22237 1.01302 0.98869 0.80117 1.48427 1.71922 1.06849 1.06886 1.17521 0.77906 0.83021 0.85904 1.90884 1.49186 1.85312 1.13915 1.20167 0.99977 0.95884 0.99422 1.21303 0.97379 0.95681 0.92593 1.21056 0.98597 0.93043 1.01673 1.20795 0.97560 0.87942 0.95662 1.98407 1.96624 1.22662 1.84607 1.20943 1.02766 0.95560 0.97953 1.17376 0.90406 0.92018 0.85908 1.91622 1.72682 1.90692 1.54133 1.22465 1.01903 0.77236 0.98379 0.92444 0.90904 0.93675 0.95735 0.96051 0.78018 0.93452 0.89756 0.90129 0.91292 0.91383 0.83112 0.83489 0.82910 0.90701 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.42 37.16 0.31 -1.69 16 2 C -0.08 -1.15 0.63 -152.24 -0.10 -1.25 16 3 C 0.17 3.19 5.25 -4.04 -0.02 3.17 16 4 N -0.73 -17.90 5.18 -59.91 -0.31 -18.21 16 5 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 9 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C -0.12 -1.28 5.91 -24.90 -0.15 -1.43 16 14 C 0.10 0.94 5.31 -3.06 -0.02 0.92 16 15 N -0.61 -8.32 3.31 -171.57 -0.57 -8.89 16 16 C 0.57 8.69 7.20 -12.43 -0.09 8.60 16 17 O -0.52 -10.23 16.86 5.30 0.09 -10.14 16 18 C -0.15 -1.74 5.43 -104.91 -0.57 -2.31 16 19 C -0.05 -0.40 8.52 -39.20 -0.33 -0.74 16 20 C -0.12 -0.81 9.81 -39.60 -0.39 -1.20 16 21 C 0.01 0.06 6.32 -39.40 -0.25 -0.19 16 22 Cl -0.05 -0.35 28.95 -51.86 -1.50 -1.85 16 23 C -0.15 -1.32 9.79 -39.53 -0.39 -1.71 16 24 C 0.16 1.89 7.25 -38.97 -0.28 1.61 16 25 F -0.11 -1.60 16.45 2.25 0.04 -1.57 16 26 C 0.12 1.98 5.61 -2.41 -0.01 1.97 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.35 6.65 -51.93 -0.35 1.01 16 29 H 0.04 0.63 7.91 -51.93 -0.41 0.22 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.39 10.01 6.23 -40.82 -0.25 9.76 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 35 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 38 H 0.15 0.90 5.87 -52.48 -0.31 0.59 16 39 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 42 H 0.09 1.67 8.00 -51.93 -0.42 1.25 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -33.28 365.06 -8.95 -42.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.37 Total: 4.59 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.53 Total: -1.51 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.15 Total: -54.65 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.28 -8.95 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724228145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.118 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds