Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 110.88446 * 2 1 4 4 N 1.46506 * 109.47259 * 303.88200 * 3 2 1 5 5 C 1.36936 * 120.00116 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00255 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99893 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99743 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47170 * 90.00565 * 9 7 5 11 11 H 1.48505 * 109.46781 * 209.99981 * 9 7 5 12 12 H 1.48497 * 109.47199 * 329.99867 * 9 7 5 13 13 C 1.55150 * 111.00672 * 123.87824 * 2 1 3 14 14 C 1.54326 * 102.93955 * 82.60975 * 13 2 1 15 15 N 1.47020 * 107.27325 * 22.19481 * 14 13 2 16 16 C 1.34776 * 125.65074 * 181.02029 * 15 14 13 17 17 O 1.21579 * 119.99993 * 184.85804 * 16 15 14 18 18 C 1.47627 * 120.00024 * 4.86385 * 16 15 14 19 19 C 1.39702 * 120.15178 * 313.16448 * 18 16 15 20 20 C 1.37794 * 119.89226 * 180.29558 * 19 18 16 21 21 C 1.38615 * 120.20108 * 359.43185 * 20 19 18 22 22 Cl 1.73601 * 119.84245 * 180.27476 * 21 20 19 23 23 C 1.38355 * 120.31683 * 0.29782 * 21 20 19 24 24 C 1.38262 * 120.09862 * 359.97438 * 23 21 20 25 25 F 1.35095 * 120.09978 * 179.97438 * 24 23 21 26 26 C 1.47423 * 108.69965 * 1.28449 * 15 14 13 27 27 H 1.08998 * 109.46685 * 296.11864 * 1 2 3 28 28 H 1.08994 * 109.46991 * 56.11649 * 1 2 3 29 29 H 1.08997 * 109.46877 * 176.11921 * 1 2 3 30 30 H 1.09000 * 109.47373 * 63.87764 * 3 2 1 31 31 H 1.08997 * 109.47068 * 183.88591 * 3 2 1 32 32 H 0.97002 * 119.99921 * 0.02562 * 4 3 2 33 33 H 0.96991 * 120.00027 * 180.02562 * 8 7 5 34 34 H 1.08999 * 110.72183 * 324.25334 * 13 2 1 35 35 H 1.08995 * 110.87413 * 201.04267 * 13 2 1 36 36 H 1.08999 * 109.88412 * 262.77167 * 14 13 2 37 37 H 1.09001 * 109.87944 * 141.61314 * 14 13 2 38 38 H 1.08008 * 120.05659 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.90187 * 179.69996 * 20 19 18 40 40 H 1.07995 * 119.95412 * 179.97438 * 23 21 20 41 41 H 1.08998 * 110.36812 * 94.48523 * 26 15 14 42 42 H 1.09006 * 110.36785 * 216.80252 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 7 1.5302 2.1603 -1.1467 5 6 1.8794 3.4680 -1.3541 6 1 2.5571 3.9606 -0.6727 7 6 1.3630 4.1603 -2.4409 8 7 0.5375 3.5598 -3.2718 9 14 1.8400 5.9440 -2.7243 10 1 3.0526 6.0023 -3.5795 11 1 0.7237 6.6535 -3.3993 12 1 2.1226 6.5940 -1.4194 13 6 2.0862 -0.8074 1.2025 14 6 2.0295 -2.2642 0.6964 15 7 2.0154 -2.2157 -0.7729 16 6 1.9494 -3.2828 -1.5935 17 8 2.0331 -3.1305 -2.7968 18 6 1.7755 -4.6367 -1.0312 19 6 2.5582 -5.0542 0.0480 20 6 2.3956 -6.3212 0.5648 21 6 1.4497 -7.1785 0.0245 22 17 1.2478 -8.7702 0.6874 23 6 0.6661 -6.7719 -1.0407 24 6 0.8224 -5.5053 -1.5728 25 9 0.0576 -5.1084 -2.6133 26 6 2.0916 -0.8068 -1.2001 27 1 -0.3632 0.4524 0.9227 28 1 -0.3633 0.5729 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 1.7823 1.9303 0.9227 31 1 3.1629 1.4034 -0.0696 32 1 0.9211 1.7180 -1.7586 33 1 0.1770 4.0434 -4.0313 34 1 1.4521 -0.6789 2.0796 35 1 3.1128 -0.5159 1.4244 36 1 1.1230 -2.7480 1.0602 37 1 2.9075 -2.8107 1.0409 38 1 3.2932 -4.3868 0.4734 39 1 3.0040 -6.6458 1.3960 40 1 -0.0687 -7.4447 -1.4573 41 1 3.1260 -0.5259 -1.3982 42 1 1.4775 -0.6452 -2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724228145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -63.326671 kcal Electronic energy + Delta-G solvation = -27064.151694 eV Core-core repulsion = 22984.026055 eV Total energy + Delta-G solvation = -4080.125639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.19140 -41.66764 -40.07129 -39.08711 -37.54175 -36.53583 -34.46390 -32.66694 -32.02324 -31.70951 -30.37816 -28.08094 -27.35323 -25.59788 -24.49163 -23.95275 -23.26973 -21.02657 -20.23554 -19.31204 -18.85487 -18.29998 -17.96744 -17.22966 -17.03927 -16.75538 -16.54653 -16.36866 -15.61616 -15.51543 -15.29713 -15.20747 -14.82622 -14.63714 -14.49482 -14.28697 -14.13231 -13.61908 -13.47106 -13.42527 -13.02927 -12.96563 -12.80778 -12.70640 -12.68838 -12.46870 -12.15250 -12.11687 -12.02288 -11.69720 -11.51634 -11.40203 -11.23139 -10.93083 -10.23448 -9.97049 -9.72513 -8.97538 -7.93767 -5.22201 -0.55952 -0.10155 0.85226 1.37340 1.46605 1.48802 1.57052 1.75516 2.27308 2.56564 2.96031 3.16538 3.39532 3.43455 3.56670 3.59617 3.81327 3.85646 3.91217 4.12379 4.20005 4.30471 4.36192 4.38114 4.54788 4.59492 4.70023 4.75290 4.81070 4.86772 4.88504 4.94879 4.96774 5.07101 5.09468 5.15139 5.25242 5.32007 5.42136 5.47001 5.51792 6.28036 6.34508 6.87956 7.34389 8.12245 8.32958 9.30121 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.002327 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.263972 B =12029.552136 C =12617.179007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.239 4.239 6 H 0.080 0.920 7 C -0.081 4.081 8 N -0.974 5.974 9 Si 0.973 3.027 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.109 4.109 14 C 0.092 3.908 15 N -0.603 5.603 16 C 0.563 3.437 17 O -0.582 6.582 18 C -0.167 4.167 19 C -0.038 4.038 20 C -0.105 4.105 21 C 0.010 3.990 22 Cl -0.039 7.039 23 C -0.148 4.148 24 C 0.132 3.868 25 F -0.141 7.141 26 C 0.125 3.875 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.372 0.628 33 H 0.249 0.751 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.063 0.937 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -26.341 17.470 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C 0.040 3.960 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.098 0.902 7 C -0.273 4.273 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.189 1.189 13 C -0.147 4.147 14 C -0.029 4.029 15 N -0.335 5.335 16 C 0.352 3.648 17 O -0.462 6.462 18 C -0.171 4.171 19 C -0.056 4.056 20 C -0.123 4.123 21 C -0.017 4.017 22 Cl -0.010 7.010 23 C -0.167 4.167 24 C 0.112 3.888 25 F -0.119 7.119 26 C 0.002 3.998 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.195 0.805 39 H 0.202 0.798 40 H 0.182 0.818 41 H 0.082 0.918 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.137 -26.289 16.894 31.522 hybrid contribution -0.596 1.143 -1.761 2.183 sum 3.541 -25.146 15.132 29.561 Atomic orbital electron populations 1.21588 0.93670 1.00833 1.01955 1.21874 0.96069 0.94176 0.95118 1.20784 0.95678 0.89386 0.90118 1.42679 1.55897 1.10470 1.29870 1.19668 1.21224 0.89081 1.07079 0.90164 1.25600 1.00790 1.02629 0.98280 1.69837 1.37445 1.37871 1.17334 0.85133 0.76539 0.80072 0.77988 1.21737 1.22559 1.18919 1.22766 1.03674 0.91540 0.96735 1.22620 1.04222 0.99072 0.76984 1.48477 1.70896 1.05226 1.08876 1.18189 0.76646 0.84627 0.85296 1.90839 1.52126 1.86462 1.16780 1.19990 1.01874 0.93820 1.01406 1.21542 0.96531 0.96633 0.90919 1.21444 0.97570 0.91746 1.01552 1.20954 0.97165 0.88613 0.94984 1.98422 1.96556 1.21767 1.84206 1.21035 1.03134 0.94411 0.98118 1.17741 0.91334 0.93454 0.86269 1.91547 1.73596 1.91146 1.55647 1.22187 1.00244 0.79748 0.97611 0.90747 0.95280 0.92488 0.94552 0.95545 0.79497 0.94232 0.86989 0.88492 0.89396 0.87331 0.80517 0.79779 0.81779 0.91841 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.42 71.98 0.61 -3.18 16 2 C -0.07 -2.08 0.63 -50.71 -0.03 -2.11 16 3 C 0.17 6.17 5.25 86.38 0.45 6.62 16 4 N -0.75 -37.62 5.18 -343.44 -1.78 -39.40 16 5 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 8 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 9 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 13 C -0.11 -1.85 5.91 31.78 0.19 -1.66 16 14 C 0.09 1.41 5.31 86.73 0.46 1.87 16 15 N -0.60 -16.29 3.31 -815.00 -2.70 -18.99 16 16 C 0.56 17.71 7.20 86.72 0.62 18.33 16 17 O -0.58 -24.97 16.86 -3.97 -0.07 -25.03 16 18 C -0.17 -3.72 5.43 -20.05 -0.11 -3.83 16 19 C -0.04 -0.45 8.52 22.52 0.19 -0.26 16 20 C -0.10 -0.87 9.81 22.25 0.22 -0.65 16 21 C 0.01 0.12 6.32 22.39 0.14 0.26 16 22 Cl -0.04 -0.39 28.95 -2.72 -0.08 -0.47 16 23 C -0.15 -2.36 9.79 22.30 0.22 -2.14 16 24 C 0.13 3.10 7.25 22.67 0.16 3.26 16 25 F -0.14 -4.33 16.45 44.97 0.74 -3.59 16 26 C 0.12 4.26 5.61 86.93 0.49 4.75 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 1.13 6.65 -2.39 -0.02 1.12 16 29 H 0.06 1.59 7.91 -2.39 -0.02 1.57 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 0.97 8.07 -2.39 -0.02 0.95 16 32 H 0.37 20.58 6.23 -92.71 -0.58 20.01 16 33 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.11 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.10 1.40 8.04 -2.39 -0.02 1.38 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 0.87 5.95 -2.39 -0.01 0.85 16 38 H 0.18 1.13 5.87 -2.91 -0.02 1.11 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.06 2.26 7.99 -2.39 -0.02 2.24 16 42 H 0.04 1.61 8.00 -2.38 -0.02 1.59 16 Total: -1.00 -79.78 365.06 3.83 -75.95 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.48 Total: 19.48 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.92 Total: 4.51 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -4.19 Total: -119.82 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -79.78 3.83 -75.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724228145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds