Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99647 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99828 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99821 * 3 2 1 7 7 C 1.38802 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99553 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00153 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00135 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99849 * 179.97438 * 13 11 10 15 15 H 1.08997 * 112.85094 * 23.80711 * 14 13 11 16 16 C 1.53782 * 113.61293 * 155.00157 * 14 13 11 17 17 C 1.53788 * 87.08028 * 139.98377 * 16 14 13 18 18 H 1.08999 * 113.61605 * 89.11596 * 17 16 14 19 19 N 1.46900 * 113.61143 * 219.93892 * 17 16 14 20 20 C 1.46908 * 110.99959 * 204.99997 * 19 17 16 21 21 C 1.53000 * 109.47292 * 179.97438 * 20 19 17 22 22 C 1.50697 * 109.47111 * 180.02562 * 21 20 19 23 23 C 1.33389 * 125.20786 * 89.71516 * 22 21 20 24 24 C 1.38422 * 114.92285 * 179.86160 * 23 22 21 25 25 C 1.33388 * 114.92042 * 0.43065 * 24 23 22 26 26 S 1.75886 * 125.19934 * 270.02199 * 22 21 20 27 27 C 1.53779 * 113.61539 * 252.49865 * 14 13 11 28 28 H 0.97006 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47260 * 300.00006 * 10 9 7 30 30 H 1.09000 * 109.46919 * 60.00544 * 10 9 7 31 31 H 0.97000 * 120.00186 * 0.02562 * 13 11 10 32 32 H 1.08996 * 113.61396 * 254.52885 * 16 14 13 33 33 H 1.08997 * 113.61283 * 25.35210 * 16 14 13 34 34 H 1.00907 * 111.00241 * 328.94426 * 19 17 16 35 35 H 1.09006 * 109.46589 * 299.99662 * 20 19 17 36 36 H 1.09002 * 109.47042 * 59.99634 * 20 19 17 37 37 H 1.09001 * 109.46668 * 299.99451 * 21 20 19 38 38 H 1.08997 * 109.47298 * 59.99436 * 21 20 19 39 39 H 1.07995 * 122.53391 * 0.02562 * 23 22 21 40 40 H 1.07998 * 122.54122 * 180.20210 * 24 23 22 41 41 H 1.07999 * 125.20406 * 179.79669 * 25 24 23 42 42 H 1.09006 * 113.61565 * 334.56964 * 27 14 13 43 43 H 1.08999 * 113.61840 * 105.47217 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 3.5478 1.4402 0.7001 6 1 1.4477 2.6527 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4947 -0.0001 14 6 7.4907 -4.7357 -0.0005 15 1 8.0595 -3.8990 0.4049 16 6 7.8883 -6.0968 0.5946 17 6 8.9324 -6.1952 -0.5302 18 1 9.8964 -5.7576 -0.2706 19 7 9.0533 -7.5417 -1.1047 20 6 10.3812 -7.7429 -1.7000 21 6 10.4691 -9.1535 -2.2860 22 6 11.8315 -9.3600 -2.8961 23 6 12.8990 -9.8337 -2.2515 24 6 14.0451 -9.9397 -3.0204 25 6 13.9109 -9.5434 -4.2870 26 16 12.2594 -9.0059 -4.5650 27 6 8.0282 -5.2549 -1.3445 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 0.8904 30 1 3.6434 -3.4318 -0.8896 31 1 5.4291 -5.2435 -0.0007 32 1 8.3251 -6.0270 1.5908 33 1 7.1018 -6.8486 0.5290 34 1 8.8565 -8.2492 -0.4127 35 1 10.5395 -7.0098 -2.4911 36 1 11.1457 -7.6203 -0.9327 37 1 10.3110 -9.8861 -1.4946 38 1 9.7046 -9.2765 -3.0531 39 1 12.8703 -10.1159 -1.2095 40 1 14.9784 -10.3113 -2.6239 41 1 14.6960 -9.5519 -5.0285 42 1 7.2804 -5.7769 -1.9416 43 1 8.5779 -4.5054 -1.9139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731471111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 10.362282 kcal Electronic energy + Delta-G solvation = -22746.745038 eV Core-core repulsion = 19238.071675 eV Total energy + Delta-G solvation = -3508.673363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10827 -38.63304 -38.22107 -35.72414 -33.33982 -32.42618 -31.62790 -29.23726 -27.71465 -25.96896 -25.61332 -24.52225 -23.12181 -22.29465 -20.47375 -19.97268 -19.63882 -17.80402 -17.55810 -16.78401 -16.35664 -16.03368 -15.89469 -15.58897 -15.00006 -14.97322 -14.52729 -14.42382 -13.79405 -13.64387 -13.33207 -13.16761 -12.93959 -12.79020 -12.70616 -12.66111 -12.62885 -12.21388 -11.92467 -11.69304 -11.41714 -11.24565 -11.12429 -11.03980 -10.99841 -10.78884 -10.55628 -9.84300 -9.48243 -9.09108 -9.00602 -8.96720 -8.90195 -8.78619 -8.48651 -6.90365 -6.27845 -3.99383 0.55075 1.20249 1.58263 2.29662 2.78633 2.97009 3.30975 3.34980 3.51542 3.61070 3.82804 4.19311 4.33125 4.34539 4.45627 4.56860 4.65744 4.67020 4.72411 4.76421 4.84422 4.98356 5.08753 5.11323 5.18138 5.21267 5.36173 5.38793 5.45269 5.55777 5.57071 5.70184 5.77482 5.81284 5.84814 5.87410 6.01572 6.04642 6.06711 6.60923 6.67826 6.93524 7.65547 7.95227 8.42782 8.51885 9.18457 10.81386 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.001451 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.918822 B =19294.013513 C =19541.061328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.724 5.724 14 C 0.127 3.873 15 H 0.114 0.886 16 C -0.149 4.149 17 C 0.061 3.939 18 H 0.077 0.923 19 N -0.676 5.676 20 C 0.064 3.936 21 C -0.048 4.048 22 C -0.170 4.170 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.218 4.218 26 S 0.103 5.897 27 C -0.138 4.138 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.342 0.658 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.163 0.837 42 H 0.093 0.907 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.740 -24.143 -4.090 36.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.200 1.200 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.396 6.396 13 N -0.377 5.377 14 C 0.021 3.979 15 H 0.132 0.868 16 C -0.188 4.188 17 C -0.049 4.049 18 H 0.094 0.906 19 N -0.306 5.306 20 C -0.066 4.066 21 C -0.088 4.088 22 C -0.288 4.288 23 C -0.173 4.173 24 C -0.165 4.165 25 C -0.354 4.354 26 S 0.367 5.633 27 C -0.177 4.177 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.112 0.888 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.789 -21.719 -5.938 34.995 hybrid contribution 0.355 -1.405 1.887 2.379 sum 27.144 -23.124 -4.051 35.888 Atomic orbital electron populations 1.69943 1.05918 1.27741 1.48120 1.24710 0.94440 0.98946 0.93175 0.86735 0.81892 0.83286 0.79937 1.19209 1.15936 1.19951 1.22325 0.88309 0.97539 1.58741 0.89395 1.84781 1.09238 1.00165 1.97425 1.23291 0.94122 1.04322 1.05808 1.20318 0.90550 0.82480 0.74879 1.90689 1.58785 1.42255 1.47822 1.45902 1.06874 1.07965 1.76948 1.22214 0.82078 0.96847 0.96804 0.86833 1.23628 0.99034 0.97887 0.98225 1.22820 0.97127 0.89735 0.95223 0.90561 1.60565 1.28782 1.03670 1.37632 1.22014 0.89529 0.96272 0.98791 1.20114 0.90943 0.97285 1.00459 1.24472 1.00023 1.07332 0.96984 1.20139 0.92047 1.03742 1.01364 1.20177 0.99774 1.03099 0.93440 1.25654 1.00167 1.08532 1.01027 1.84465 1.04916 1.64000 1.09969 1.23580 0.99079 0.97847 0.97222 0.91960 0.88475 0.88474 0.76535 0.90801 0.88784 0.83968 0.90612 0.94792 0.90042 0.89672 0.84442 0.84380 0.81966 0.88818 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.39 7.85 -10.98 -0.09 9.31 16 12 O -0.52 -11.22 15.46 5.56 0.09 -11.13 16 13 N -0.72 -9.05 5.35 -53.02 -0.28 -9.34 16 14 C 0.13 1.37 4.24 -67.12 -0.28 1.09 16 15 H 0.11 1.44 7.46 -51.93 -0.39 1.05 16 16 C -0.15 -1.11 7.40 -25.91 -0.19 -1.30 16 17 C 0.06 0.47 4.14 -66.90 -0.28 0.19 16 18 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 19 N -0.68 -4.50 6.56 -105.85 -0.69 -5.20 16 20 C 0.06 0.41 5.51 -3.82 -0.02 0.39 16 21 C -0.05 -0.28 5.97 -27.88 -0.17 -0.45 16 22 C -0.17 -1.14 5.76 -36.00 -0.21 -1.35 16 23 C -0.14 -0.91 10.05 -41.21 -0.41 -1.32 16 24 C -0.13 -0.82 10.18 -41.21 -0.42 -1.24 16 25 C -0.22 -1.34 11.23 29.04 0.33 -1.02 16 26 S 0.10 0.71 23.33 -107.50 -2.51 -1.80 16 27 C -0.14 -1.36 7.68 -25.92 -0.20 -1.56 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.40 3.90 8.73 -40.82 -0.36 3.54 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.34 1.81 8.55 -39.29 -0.34 1.47 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.22 8.13 -51.93 -0.42 -0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.99 388.12 -11.55 -45.53 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.56 Total: 1.92 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.50 Total: -11.51 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.20 Total: -40.40 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -4.50 Total: -7.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.99 -11.55 -45.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731471111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.897 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds