Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99647 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99828 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99821 * 3 2 1 7 7 C 1.38802 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99553 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00153 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00135 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99849 * 179.97438 * 13 11 10 15 15 H 1.08997 * 112.85094 * 23.80711 * 14 13 11 16 16 C 1.53782 * 113.61293 * 155.00157 * 14 13 11 17 17 C 1.53788 * 87.08028 * 139.98377 * 16 14 13 18 18 H 1.08999 * 113.61605 * 89.11596 * 17 16 14 19 19 N 1.46900 * 113.61143 * 219.93892 * 17 16 14 20 20 C 1.46908 * 110.99959 * 204.99997 * 19 17 16 21 21 C 1.53000 * 109.47292 * 179.97438 * 20 19 17 22 22 C 1.50697 * 109.47111 * 180.02562 * 21 20 19 23 23 C 1.33389 * 125.20786 * 89.71516 * 22 21 20 24 24 C 1.38422 * 114.92285 * 179.86160 * 23 22 21 25 25 C 1.33388 * 114.92042 * 0.43065 * 24 23 22 26 26 S 1.75886 * 125.19934 * 270.02199 * 22 21 20 27 27 C 1.53779 * 113.61539 * 252.49865 * 14 13 11 28 28 H 0.97006 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47260 * 300.00006 * 10 9 7 30 30 H 1.09000 * 109.46919 * 60.00544 * 10 9 7 31 31 H 0.97000 * 120.00186 * 0.02562 * 13 11 10 32 32 H 1.08996 * 113.61396 * 254.52885 * 16 14 13 33 33 H 1.08997 * 113.61283 * 25.35210 * 16 14 13 34 34 H 1.00907 * 111.00241 * 328.94426 * 19 17 16 35 35 H 1.09006 * 109.46589 * 299.99662 * 20 19 17 36 36 H 1.09002 * 109.47042 * 59.99634 * 20 19 17 37 37 H 1.09001 * 109.46668 * 299.99451 * 21 20 19 38 38 H 1.08997 * 109.47298 * 59.99436 * 21 20 19 39 39 H 1.07995 * 122.53391 * 0.02562 * 23 22 21 40 40 H 1.07998 * 122.54122 * 180.20210 * 24 23 22 41 41 H 1.07999 * 125.20406 * 179.79669 * 25 24 23 42 42 H 1.09006 * 113.61565 * 334.56964 * 27 14 13 43 43 H 1.08999 * 113.61840 * 105.47217 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 3.5478 1.4402 0.7001 6 1 1.4477 2.6527 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4947 -0.0001 14 6 7.4907 -4.7357 -0.0005 15 1 8.0595 -3.8990 0.4049 16 6 7.8883 -6.0968 0.5946 17 6 8.9324 -6.1952 -0.5302 18 1 9.8964 -5.7576 -0.2706 19 7 9.0533 -7.5417 -1.1047 20 6 10.3812 -7.7429 -1.7000 21 6 10.4691 -9.1535 -2.2860 22 6 11.8315 -9.3600 -2.8961 23 6 12.8990 -9.8337 -2.2515 24 6 14.0451 -9.9397 -3.0204 25 6 13.9109 -9.5434 -4.2870 26 16 12.2594 -9.0059 -4.5650 27 6 8.0282 -5.2549 -1.3445 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 0.8904 30 1 3.6434 -3.4318 -0.8896 31 1 5.4291 -5.2435 -0.0007 32 1 8.3251 -6.0270 1.5908 33 1 7.1018 -6.8486 0.5290 34 1 8.8565 -8.2492 -0.4127 35 1 10.5395 -7.0098 -2.4911 36 1 11.1457 -7.6203 -0.9327 37 1 10.3110 -9.8861 -1.4946 38 1 9.7046 -9.2765 -3.0531 39 1 12.8703 -10.1159 -1.2095 40 1 14.9784 -10.3113 -2.6239 41 1 14.6960 -9.5519 -5.0285 42 1 7.2804 -5.7769 -1.9416 43 1 8.5779 -4.5054 -1.9139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731471111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -12.551830 kcal Electronic energy + Delta-G solvation = -22747.738669 eV Core-core repulsion = 19238.071675 eV Total energy + Delta-G solvation = -3509.666994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12571 -39.57603 -38.84885 -36.39035 -34.67479 -34.39335 -32.30415 -30.63155 -28.26214 -27.84680 -26.67964 -25.12341 -23.88330 -22.80549 -21.73766 -20.78062 -20.11995 -19.77797 -18.12799 -17.88182 -17.51394 -17.08259 -16.70451 -16.52956 -16.32447 -16.27392 -15.80678 -15.24398 -15.02122 -14.86018 -14.53937 -14.18135 -13.87424 -13.64319 -13.45324 -13.35447 -13.34349 -13.18544 -13.10015 -12.99698 -12.73456 -12.65797 -12.32057 -11.97525 -11.86787 -11.75523 -11.58581 -11.51914 -11.16862 -10.93406 -10.53114 -10.03073 -9.55601 -9.43687 -9.37341 -8.99175 -8.51311 -6.22034 0.08539 0.73283 0.99873 1.12005 1.31597 1.47250 1.56688 1.56865 1.84784 2.23852 2.28546 2.72554 2.87038 3.19124 3.52330 3.58891 3.89029 3.93970 3.97708 4.03286 4.12311 4.25486 4.26527 4.31656 4.47885 4.51388 4.57258 4.66641 4.74619 4.81421 4.84943 4.95355 5.01401 5.06498 5.10740 5.18742 5.26704 5.39745 5.58735 5.62139 5.70986 6.07397 6.11612 6.49419 6.52344 6.94024 7.22765 8.61075 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.001451 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.918822 B =19294.013513 C =19541.061328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.237 1.237 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.699 5.699 14 C 0.113 3.887 15 H 0.094 0.906 16 C -0.128 4.128 17 C 0.073 3.927 18 H 0.079 0.921 19 N -0.677 5.677 20 C 0.070 3.930 21 C -0.042 4.042 22 C -0.178 4.178 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.222 4.222 26 S 0.069 5.931 27 C -0.139 4.139 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.417 0.583 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.354 0.646 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.092 0.908 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.385 -25.886 -3.340 38.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.161 1.161 6 H -0.183 1.183 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.351 5.351 14 C 0.007 3.993 15 H 0.112 0.888 16 C -0.166 4.166 17 C -0.038 4.038 18 H 0.097 0.903 19 N -0.309 5.309 20 C -0.060 4.060 21 C -0.081 4.081 22 C -0.296 4.296 23 C -0.177 4.177 24 C -0.172 4.172 25 C -0.357 4.357 26 S 0.332 5.668 27 C -0.178 4.178 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.174 0.826 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.196 0.804 42 H 0.110 0.890 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 28.432 -23.535 -5.183 37.271 hybrid contribution -0.098 -1.051 1.625 1.937 sum 28.334 -24.585 -3.559 37.682 Atomic orbital electron populations 1.70019 1.07290 1.29006 1.49155 1.25551 0.95254 1.02206 0.92861 0.85872 0.80681 0.79650 0.80191 1.18762 1.16117 1.18260 1.22470 0.90269 0.96714 1.58273 0.91947 1.84713 1.06416 1.06373 1.97588 1.23288 0.96034 0.99506 1.07454 1.20001 0.89320 0.83642 0.74953 1.90679 1.59336 1.43933 1.50454 1.45707 1.08228 1.06603 1.74609 1.22417 0.80350 0.98174 0.98322 0.88798 1.23537 0.99028 0.95462 0.98607 1.22650 0.96937 0.89848 0.94369 0.90338 1.60465 1.28982 1.03443 1.38008 1.21921 0.89489 0.96247 0.98358 1.20061 0.90277 0.97182 1.00587 1.24610 1.00652 1.07810 0.96555 1.20417 0.91925 1.03183 1.02193 1.20480 1.00545 1.02826 0.93395 1.25912 0.99819 1.08307 1.01670 1.84565 1.06319 1.64798 1.11143 1.23564 0.99481 0.98129 0.96672 0.91372 0.86718 0.86938 0.74535 0.89484 0.87133 0.82558 0.92330 0.94342 0.88421 0.90397 0.82843 0.82519 0.80385 0.88998 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 2 C 0.05 2.75 5.50 84.86 0.47 3.22 16 3 Si 0.91 45.26 27.74 68.60 1.90 47.16 16 4 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.53 -31.00 10.04 67.95 0.68 -30.32 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 10 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 11 C 0.54 18.34 7.85 87.66 0.69 19.03 16 12 O -0.57 -24.31 15.46 -3.04 -0.05 -24.36 16 13 N -0.70 -16.11 5.35 -440.04 -2.36 -18.46 16 14 C 0.11 2.26 4.24 45.52 0.19 2.46 16 15 H 0.09 2.33 7.46 -2.39 -0.02 2.31 16 16 C -0.13 -1.51 7.40 31.12 0.23 -1.28 16 17 C 0.07 0.94 4.14 45.44 0.19 1.13 16 18 H 0.08 1.03 7.87 -2.39 -0.02 1.01 16 19 N -0.68 -7.35 6.56 -488.81 -3.21 -10.56 16 20 C 0.07 0.78 5.51 86.30 0.48 1.26 16 21 C -0.04 -0.41 5.97 29.85 0.18 -0.23 16 22 C -0.18 -2.19 5.76 24.59 0.14 -2.05 16 23 C -0.15 -1.60 10.05 21.22 0.21 -1.39 16 24 C -0.14 -1.49 10.18 21.22 0.22 -1.28 16 25 C -0.22 -2.50 11.23 66.72 0.75 -1.75 16 26 S 0.07 0.93 23.33 -56.49 -1.32 -0.39 16 27 C -0.14 -2.57 7.68 31.12 0.24 -2.33 16 28 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 31 H 0.42 6.89 8.73 -92.71 -0.81 6.08 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.35 2.54 8.55 -89.69 -0.77 1.78 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.04 0.41 8.13 -2.39 -0.02 0.39 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.39 388.12 -1.26 -75.64 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.59 Total: 14.02 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.10 Total: -17.30 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -5.26 Total: -84.70 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -2.37 Total: -10.46 kcal Total: -74.39 -1.26 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731471111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.093 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds