Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46745 * 2 1 4 4 C 1.50699 * 109.46844 * 240.00381 * 2 1 3 5 5 H 1.07997 * 120.00029 * 239.99530 * 4 2 1 6 6 C 1.37877 * 120.00210 * 60.00206 * 4 2 1 7 7 N 1.31512 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00025 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47385 * 89.99310 * 8 6 4 10 10 H 1.48501 * 109.47217 * 209.99561 * 8 6 4 11 11 H 1.48503 * 109.47172 * 329.99354 * 8 6 4 12 12 C 1.52996 * 109.47189 * 120.00129 * 2 1 3 13 13 O 1.45196 * 109.47183 * 300.00207 * 12 2 1 14 14 C 1.34709 * 116.99971 * 180.02562 * 13 12 2 15 15 O 1.21471 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47723 * 120.00179 * 179.97438 * 14 13 12 17 17 C 1.39633 * 120.15316 * 179.97438 * 16 14 13 18 18 C 1.37938 * 119.84852 * 180.30600 * 17 16 14 19 19 C 1.38372 * 120.14963 * 359.44003 * 18 17 16 20 20 C 1.50708 * 119.84796 * 180.28044 * 19 18 17 21 21 S 1.81398 * 109.47294 * 270.28026 * 20 19 18 22 22 C 1.81402 * 101.92042 * 180.02562 * 21 20 19 23 23 O 1.42100 * 108.57738 * 294.48544 * 21 20 19 24 24 O 1.42096 * 108.57873 * 65.51382 * 21 20 19 25 25 C 1.38363 * 120.30454 * 0.56443 * 19 18 17 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 19 18 27 27 H 1.08995 * 109.47299 * 299.99699 * 1 2 3 28 28 H 1.08995 * 109.47590 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46889 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47483 * 300.00009 * 3 2 1 32 32 H 1.09003 * 109.46833 * 60.00357 * 3 2 1 33 33 H 0.97002 * 120.00456 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46780 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47030 * 60.00266 * 12 2 1 36 36 H 1.08002 * 120.07109 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.92553 * 179.70097 * 18 17 16 38 38 H 1.09000 * 109.46665 * 30.28514 * 20 19 18 39 39 H 1.08996 * 109.46685 * 150.27641 * 20 19 18 40 40 H 1.09004 * 109.47105 * 59.99854 * 22 21 20 41 41 H 1.08999 * 109.47162 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46763 * 299.99838 * 22 21 20 43 43 H 1.07997 * 119.93022 * 179.74159 * 25 19 18 44 44 H 1.08004 * 120.07515 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9184 -0.5485 3.6270 15 8 2.6200 -1.5389 3.6750 16 6 1.4636 0.0956 4.8762 17 6 1.8370 -0.4323 6.1138 18 6 1.4035 0.1705 7.2763 19 6 0.6101 1.3026 7.2180 20 6 0.1456 1.9594 8.4925 21 16 -1.4372 1.2355 9.0038 22 6 -1.7972 2.1574 10.5240 23 8 -2.4204 1.5643 8.0320 24 8 -1.2234 -0.1283 9.3406 25 6 0.2363 1.8311 5.9951 26 6 0.6580 1.2349 4.8248 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.7081 1.1611 -3.4844 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 2.4599 -1.3133 6.1606 37 1 1.6875 -0.2396 8.2342 38 1 0.8877 1.8000 9.2747 39 1 0.0187 3.0289 8.3246 40 1 -1.8671 3.2210 10.2960 41 1 -2.7428 1.8129 10.9425 42 1 -0.9981 1.9925 11.2467 43 1 -0.3865 2.7125 5.9567 44 1 0.3652 1.6482 3.8708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184797942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -135.085143 kcal Electronic energy + Delta-G solvation = -26871.901648 eV Core-core repulsion = 22881.875588 eV Total energy + Delta-G solvation = -3990.026059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31631 -39.02280 -37.37707 -36.56612 -36.39050 -34.84377 -33.49990 -31.35100 -31.15661 -30.22051 -28.36053 -25.74437 -25.61189 -25.10383 -23.08581 -22.91454 -20.62134 -19.31560 -18.84674 -17.89893 -17.14670 -16.93157 -16.58160 -16.24692 -15.80540 -15.77961 -15.39829 -15.14937 -14.84203 -14.35685 -13.84834 -13.77872 -13.71767 -13.36451 -13.18313 -13.12153 -12.85047 -12.74697 -12.45119 -12.36873 -12.17253 -11.82163 -11.60637 -11.46920 -11.29167 -11.22585 -11.16242 -10.96177 -10.70318 -10.41193 -10.27955 -10.11737 -9.89879 -9.41620 -9.31900 -9.22218 -9.04222 -8.75601 -8.37084 -6.01495 -4.12971 -0.62118 0.60343 1.15186 2.25267 2.67365 3.12100 3.18574 3.28654 3.35496 3.39853 3.49417 3.66880 3.93765 4.10683 4.26267 4.38971 4.48442 4.70230 4.72940 4.88218 5.03629 5.10165 5.15623 5.24976 5.30713 5.57119 5.78150 5.99893 6.08975 6.10467 6.10837 6.22185 6.46973 6.58664 6.74166 6.98845 7.02472 7.13878 7.15647 7.40565 7.62794 7.70713 8.05809 8.13133 8.22131 8.39591 8.86815 9.52456 10.99727 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.002127 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.286165 B =13158.576701 C =13653.978390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.342 6.342 14 C 0.497 3.503 15 O -0.513 6.513 16 C -0.105 4.105 17 C -0.058 4.058 18 C -0.116 4.116 19 C -0.071 4.071 20 C -0.568 4.568 21 S 2.415 3.585 22 C -0.659 4.659 23 O -0.928 6.928 24 O -0.930 6.930 25 C -0.115 4.115 26 C -0.058 4.058 27 H 0.017 0.983 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 6.955 26.962 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.012 3.988 13 O -0.257 6.257 14 C 0.342 3.658 15 O -0.404 6.404 16 C -0.106 4.106 17 C -0.076 4.076 18 C -0.135 4.135 19 C -0.073 4.073 20 C -0.694 4.694 21 S 2.596 3.404 22 C -0.808 4.808 23 O -0.925 6.925 24 O -0.927 6.927 25 C -0.134 4.134 26 C -0.076 4.076 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.486 6.136 26.393 27.320 hybrid contribution 0.931 0.091 -0.400 1.017 sum -2.555 6.228 25.992 26.850 Atomic orbital electron populations 1.21777 0.97245 0.99054 1.00700 1.18259 0.93480 0.93089 0.88227 1.21772 0.98097 0.98168 1.00667 1.20926 1.31976 1.12279 0.89766 0.92487 1.24858 0.94828 0.94913 0.98795 1.69826 1.36313 1.22568 1.23305 0.86533 0.79276 0.79370 0.82456 1.20634 1.21172 1.19919 1.23736 0.98294 0.95914 0.80878 1.86564 1.68948 1.55617 1.14609 1.21094 0.77685 0.82014 0.85039 1.90793 1.35790 1.25412 1.88432 1.19457 1.01864 0.97805 0.91505 1.21293 0.97012 0.98979 0.90291 1.21035 0.98100 0.95340 0.98998 1.19091 0.99648 0.96220 0.92293 1.29392 1.22535 1.12433 1.05077 1.08260 0.77568 0.76957 0.77597 1.30321 1.12401 1.15782 1.22295 1.93629 1.56092 1.85080 1.57715 1.93617 1.85473 1.29587 1.84071 1.21143 1.00223 1.00834 0.91182 1.21631 0.93273 0.93041 0.99659 0.96425 0.89699 0.95773 0.95819 0.89705 0.96471 0.92901 0.92377 0.92349 0.83900 0.84433 0.83826 0.83729 0.85232 0.85111 0.85298 0.84345 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 3 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 4 C -0.51 -13.69 8.01 -34.44 -0.28 -13.97 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.95 9.35 55.43 0.52 -23.43 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.08 1.89 4.27 37.16 0.16 2.05 16 13 O -0.34 -6.91 8.13 -40.52 -0.33 -7.24 16 14 C 0.50 9.25 7.90 34.61 0.27 9.52 16 15 O -0.51 -10.60 16.14 -19.24 -0.31 -10.91 16 16 C -0.10 -1.56 5.87 -104.98 -0.62 -2.18 16 17 C -0.06 -0.73 9.60 -39.17 -0.38 -1.10 16 18 C -0.12 -1.17 9.68 -39.64 -0.38 -1.55 16 19 C -0.07 -0.66 5.15 -104.52 -0.54 -1.19 16 20 C -0.57 -2.55 5.93 36.01 0.21 -2.34 16 21 S 2.41 15.29 5.34 -107.50 -0.57 14.71 16 22 C -0.66 -1.33 10.62 101.05 1.07 -0.26 16 23 O -0.93 -9.83 18.10 -57.83 -1.05 -10.88 16 24 O -0.93 -9.60 18.10 -57.83 -1.05 -10.65 16 25 C -0.11 -1.20 9.68 -39.64 -0.38 -1.59 16 26 C -0.06 -0.76 9.62 -39.17 -0.38 -1.13 16 27 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 32 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 0.20 8.08 -51.92 -0.42 -0.22 16 39 H 0.14 0.23 8.08 -51.93 -0.42 -0.19 16 40 H 0.13 0.01 8.14 -51.92 -0.42 -0.41 16 41 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.13 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.15 1.94 7.61 -52.48 -0.40 1.54 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -35.78 382.35 -9.27 -45.06 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.41 Total: -2.28 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.81 Total: -16.03 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.52 Total: -23.43 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -2.73 Total: -39.67 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 15.29 SS G_CDS: -0.57 Total: 14.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.78 -9.27 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184797942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.030 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds