Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46745 * 2 1 4 4 C 1.50699 * 109.46844 * 240.00381 * 2 1 3 5 5 H 1.07997 * 120.00029 * 239.99530 * 4 2 1 6 6 C 1.37877 * 120.00210 * 60.00206 * 4 2 1 7 7 N 1.31512 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00025 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47385 * 89.99310 * 8 6 4 10 10 H 1.48501 * 109.47217 * 209.99561 * 8 6 4 11 11 H 1.48503 * 109.47172 * 329.99354 * 8 6 4 12 12 C 1.52996 * 109.47189 * 120.00129 * 2 1 3 13 13 O 1.45196 * 109.47183 * 300.00207 * 12 2 1 14 14 C 1.34709 * 116.99971 * 180.02562 * 13 12 2 15 15 O 1.21471 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47723 * 120.00179 * 179.97438 * 14 13 12 17 17 C 1.39633 * 120.15316 * 179.97438 * 16 14 13 18 18 C 1.37938 * 119.84852 * 180.30600 * 17 16 14 19 19 C 1.38372 * 120.14963 * 359.44003 * 18 17 16 20 20 C 1.50708 * 119.84796 * 180.28044 * 19 18 17 21 21 S 1.81398 * 109.47294 * 270.28026 * 20 19 18 22 22 C 1.81402 * 101.92042 * 180.02562 * 21 20 19 23 23 O 1.42100 * 108.57738 * 294.48544 * 21 20 19 24 24 O 1.42096 * 108.57873 * 65.51382 * 21 20 19 25 25 C 1.38363 * 120.30454 * 0.56443 * 19 18 17 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 19 18 27 27 H 1.08995 * 109.47299 * 299.99699 * 1 2 3 28 28 H 1.08995 * 109.47590 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46889 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47483 * 300.00009 * 3 2 1 32 32 H 1.09003 * 109.46833 * 60.00357 * 3 2 1 33 33 H 0.97002 * 120.00456 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46780 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47030 * 60.00266 * 12 2 1 36 36 H 1.08002 * 120.07109 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.92553 * 179.70097 * 18 17 16 38 38 H 1.09000 * 109.46665 * 30.28514 * 20 19 18 39 39 H 1.08996 * 109.46685 * 150.27641 * 20 19 18 40 40 H 1.09004 * 109.47105 * 59.99854 * 22 21 20 41 41 H 1.08999 * 109.47162 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46763 * 299.99838 * 22 21 20 43 43 H 1.07997 * 119.93022 * 179.74159 * 25 19 18 44 44 H 1.08004 * 120.07515 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9184 -0.5485 3.6270 15 8 2.6200 -1.5389 3.6750 16 6 1.4636 0.0956 4.8762 17 6 1.8370 -0.4323 6.1138 18 6 1.4035 0.1705 7.2763 19 6 0.6101 1.3026 7.2180 20 6 0.1456 1.9594 8.4925 21 16 -1.4372 1.2355 9.0038 22 6 -1.7972 2.1574 10.5240 23 8 -2.4204 1.5643 8.0320 24 8 -1.2234 -0.1283 9.3406 25 6 0.2363 1.8311 5.9951 26 6 0.6580 1.2349 4.8248 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.7081 1.1611 -3.4844 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 2.4599 -1.3133 6.1606 37 1 1.6875 -0.2396 8.2342 38 1 0.8877 1.8000 9.2747 39 1 0.0187 3.0289 8.3246 40 1 -1.8671 3.2210 10.2960 41 1 -2.7428 1.8129 10.9425 42 1 -0.9981 1.9925 11.2467 43 1 -0.3865 2.7125 5.9567 44 1 0.3652 1.6482 3.8708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184797942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -158.448320 kcal Electronic energy + Delta-G solvation = -26872.914751 eV Core-core repulsion = 22881.875588 eV Total energy + Delta-G solvation = -3991.039163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66372 -40.12033 -38.28462 -37.95792 -36.97181 -36.64982 -34.31455 -33.25847 -32.13118 -30.46090 -29.17826 -27.58985 -27.51580 -27.01716 -24.23483 -23.81054 -21.84942 -20.75075 -19.79675 -19.20957 -18.03361 -17.81471 -17.58759 -17.38720 -17.33610 -16.97025 -16.69615 -16.10288 -16.04732 -15.48612 -14.93908 -14.90291 -14.63435 -14.51922 -14.04600 -13.84712 -13.81217 -13.67593 -13.56140 -13.34139 -13.18178 -13.05075 -12.97518 -12.93892 -12.84601 -12.64016 -12.34976 -12.15982 -12.14011 -12.12348 -11.77675 -11.76361 -11.63981 -11.31412 -11.22295 -10.75771 -10.41560 -10.10991 -9.90844 -8.05631 -6.23713 -1.10568 -0.33390 0.26667 1.41145 1.42695 1.43923 1.52685 1.69444 1.90368 2.44451 2.61608 2.78218 3.13623 3.17642 3.38668 3.63463 3.71997 3.89801 4.07809 4.17045 4.23007 4.23196 4.23946 4.33213 4.45959 4.53501 4.56917 4.77193 4.82246 4.95157 5.02716 5.04829 5.11309 5.17790 5.21023 5.21895 5.28494 5.34758 5.51660 5.62058 5.63432 5.72607 6.05852 6.15713 6.35429 6.65438 6.80846 7.44003 8.94156 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.002127 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.286165 B =13158.576701 C =13653.978390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.118 4.118 4 C -0.534 4.534 5 H 0.049 0.951 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.096 3.904 13 O -0.345 6.345 14 C 0.495 3.505 15 O -0.543 6.543 16 C -0.137 4.137 17 C -0.066 4.066 18 C -0.117 4.117 19 C -0.063 4.063 20 C -0.560 4.560 21 S 2.402 3.598 22 C -0.632 4.632 23 O -0.984 6.984 24 O -0.983 6.983 25 C -0.120 4.120 26 C -0.068 4.068 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 8.899 30.205 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 C -0.176 4.176 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.022 3.978 13 O -0.261 6.261 14 C 0.342 3.658 15 O -0.436 6.436 16 C -0.138 4.138 17 C -0.084 4.084 18 C -0.136 4.136 19 C -0.065 4.065 20 C -0.687 4.687 21 S 2.591 3.409 22 C -0.785 4.785 23 O -0.982 6.982 24 O -0.981 6.981 25 C -0.138 4.138 26 C -0.087 4.087 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.158 0.842 37 H 0.187 0.813 38 H 0.203 0.797 39 H 0.201 0.799 40 H 0.177 0.823 41 H 0.152 0.848 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.561 8.056 29.613 30.895 hybrid contribution 0.913 -0.409 -1.184 1.550 sum -2.648 7.647 28.429 29.558 Atomic orbital electron populations 1.21634 0.97103 0.98585 1.00396 1.18281 0.93619 0.93415 0.88591 1.21618 0.97787 0.97765 1.00409 1.21176 1.32404 1.12482 0.91109 0.93286 1.25521 0.94996 0.95587 1.01184 1.69933 1.36627 1.23226 1.23892 0.85626 0.78668 0.78401 0.79321 1.20332 1.20546 1.19839 1.23336 0.97700 0.95279 0.81449 1.86549 1.69181 1.55541 1.14788 1.21829 0.76878 0.81693 0.85371 1.90760 1.37335 1.26814 1.88655 1.19350 1.04749 0.99541 0.90195 1.21421 0.97288 0.99203 0.90479 1.21452 0.97567 0.95331 0.99204 1.19613 0.97487 0.95306 0.94053 1.29438 1.21748 1.13970 1.03585 1.08124 0.77495 0.76614 0.78673 1.30079 1.13690 1.16156 1.18546 1.93568 1.58167 1.85636 1.60799 1.93558 1.86116 1.33425 1.84953 1.21513 1.00027 1.01540 0.90768 1.21673 0.93454 0.92820 1.00707 0.94920 0.91598 0.96277 0.96081 0.91651 0.94829 0.92778 0.93020 0.93260 0.84209 0.81272 0.79667 0.79860 0.82312 0.84811 0.82195 0.81660 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.11 71.98 0.58 -5.32 16 2 C 0.06 3.08 0.58 -52.93 -0.03 3.05 16 3 C -0.12 -5.75 8.11 71.98 0.58 -5.17 16 4 C -0.53 -29.21 8.01 25.60 0.21 -29.01 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.47 5.15 84.66 0.44 1.91 16 7 N -0.90 -49.39 9.35 21.45 0.20 -49.19 16 8 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.10 4.45 4.27 71.98 0.31 4.76 16 13 O -0.34 -14.46 8.13 -56.19 -0.46 -14.92 16 14 C 0.50 19.29 7.90 70.33 0.56 19.84 16 15 O -0.54 -23.54 16.14 19.93 0.32 -23.22 16 16 C -0.14 -4.19 5.87 -20.10 -0.12 -4.31 16 17 C -0.07 -1.66 9.60 22.54 0.22 -1.45 16 18 C -0.12 -2.11 9.68 22.23 0.22 -1.90 16 19 C -0.06 -0.98 5.15 -19.80 -0.10 -1.08 16 20 C -0.56 -2.26 5.93 71.24 0.42 -1.84 16 21 S 2.40 23.83 5.34 -56.49 -0.30 23.53 16 22 C -0.63 0.70 10.62 113.37 1.20 1.90 16 23 O -0.98 -19.75 18.10 -127.37 -2.30 -22.05 16 24 O -0.98 -18.99 18.10 -127.37 -2.31 -21.29 16 25 C -0.12 -2.29 9.68 22.23 0.22 -2.07 16 26 C -0.07 -1.79 9.62 22.54 0.22 -1.57 16 27 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 28 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 32 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 33 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.14 3.49 7.65 -2.91 -0.02 3.47 16 37 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.19 -0.71 8.08 -2.39 -0.02 -0.73 16 39 H 0.18 -0.58 8.08 -2.39 -0.02 -0.60 16 40 H 0.16 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.16 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.14 3.79 7.61 -2.91 -0.02 3.76 16 Total: -1.00 -82.28 382.35 3.09 -79.19 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.00 Total: 4.94 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.91 Total: -22.25 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.20 Total: -49.19 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -4.75 Total: -81.48 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 23.83 SS G_CDS: -0.30 Total: 23.53 kcal Total: -82.28 3.09 -79.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184797942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.254 kcal (2) G-P(sol) polarization free energy of solvation -82.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds