Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 C 1.52998 * 109.47400 * 120.00133 * 2 1 3 5 5 S 1.81401 * 109.46922 * 64.99600 * 4 2 1 6 6 O 1.42106 * 108.57827 * 65.51705 * 5 4 2 7 7 O 1.42096 * 108.58208 * 294.48936 * 5 4 2 8 8 C 1.81396 * 101.92231 * 180.02562 * 5 4 2 9 9 C 1.50696 * 109.47349 * 180.02562 * 8 5 4 10 10 O 1.20823 * 120.00135 * 359.97438 * 9 8 5 11 11 O 1.34235 * 119.99963 * 179.97438 * 9 8 5 12 12 C 1.45200 * 116.99794 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47044 * 180.02562 * 12 11 9 14 14 C 1.38633 * 119.74785 * 269.73062 * 13 12 11 15 15 C 1.37616 * 120.24971 * 179.72226 * 14 13 12 16 16 C 1.40726 * 119.74353 * 0.56653 * 15 14 13 17 17 C 1.41392 * 120.24573 * 179.68153 * 16 15 14 18 18 H 1.07998 * 120.00120 * 204.40682 * 17 16 15 19 19 C 1.39945 * 119.99829 * 24.40979 * 17 16 15 20 20 N 1.30824 * 120.00405 * 17.84574 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 197.84402 * 19 17 16 22 22 H 1.48498 * 109.47062 * 59.99965 * 21 19 17 23 23 H 1.48505 * 109.47337 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47130 * 299.99991 * 21 19 17 25 25 C 1.40715 * 119.50640 * 359.70704 * 16 15 14 26 26 C 1.37616 * 119.75074 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.47159 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47087 * 59.99913 * 1 2 3 29 29 H 1.08996 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46823 * 240.00217 * 2 1 3 31 31 H 1.08995 * 109.46887 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47162 * 300.00042 * 3 2 1 33 33 H 1.08994 * 109.47421 * 60.00138 * 3 2 1 34 34 H 1.08999 * 109.46856 * 305.00006 * 4 2 1 35 35 H 1.08992 * 109.47472 * 184.99416 * 4 2 1 36 36 H 1.09001 * 109.47384 * 59.99521 * 8 5 4 37 37 H 1.09001 * 109.46974 * 300.00037 * 8 5 4 38 38 H 1.09004 * 109.47012 * 300.00047 * 12 11 9 39 39 H 1.09003 * 109.47353 * 60.00225 * 12 11 9 40 40 H 1.07996 * 119.87768 * 359.97438 * 14 13 12 41 41 H 1.08002 * 120.13552 * 180.27593 * 15 14 13 42 42 H 0.97002 * 120.00394 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.12445 * 179.97438 * 25 16 15 44 44 H 1.07993 * 119.88115 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 -2.4691 1.1765 6 8 2.2381 -3.0799 0.0872 7 8 0.1433 -2.5529 1.2467 8 6 2.2538 -3.1129 2.7240 9 6 1.9475 -4.5840 2.8382 10 8 1.3247 -5.1409 1.9654 11 8 2.3667 -5.2756 3.9096 12 6 2.0352 -6.6886 3.9530 13 6 2.5832 -7.2944 5.2194 14 6 3.8598 -7.8348 5.2270 15 6 4.3726 -8.3856 6.3791 16 6 3.5913 -8.4096 7.5493 17 6 4.1051 -8.9789 8.7372 18 1 3.4301 -9.3570 9.4907 19 6 5.4884 -9.0523 8.9366 20 7 6.2925 -8.3057 8.2242 21 14 6.1866 -10.2163 10.2199 22 1 5.7975 -11.6103 9.8877 23 1 7.6675 -10.1063 10.2346 24 1 5.6499 -9.8579 11.5574 25 6 2.2947 -7.8633 7.5283 26 6 1.8049 -7.3118 6.3665 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 1.8127 -2.5829 3.5682 37 1 3.3338 -2.9657 2.7269 38 1 0.9520 -6.8084 3.9324 39 1 2.4728 -7.1912 3.0904 40 1 4.4557 -7.8199 4.3264 41 1 5.3691 -8.8021 6.3842 42 1 7.2513 -8.3569 8.3621 43 1 1.6863 -7.8767 8.4205 44 1 0.8099 -6.8923 6.3479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271880970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -149.675786 kcal Electronic energy + Delta-G solvation = -26311.530010 eV Core-core repulsion = 22320.871253 eV Total energy + Delta-G solvation = -3990.658757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37680 -37.78679 -37.28687 -36.89472 -36.41969 -36.01679 -33.94194 -31.51156 -30.53763 -29.42360 -28.36688 -27.60100 -27.16149 -23.98323 -21.73531 -21.14543 -20.82011 -20.13020 -19.12112 -18.01824 -17.44815 -17.01663 -16.97345 -16.75802 -16.10175 -15.71106 -15.35584 -15.13711 -14.39642 -14.32973 -14.11354 -13.89075 -13.69860 -13.27517 -12.98872 -12.87979 -12.60233 -12.47224 -12.44816 -12.34883 -12.19646 -12.08333 -11.87603 -11.79833 -11.51618 -11.40003 -11.29562 -11.22149 -11.06547 -10.99965 -10.71082 -10.58564 -10.50168 -10.29447 -9.77774 -9.52325 -9.27394 -7.62634 -7.51715 -6.92215 -4.52157 -0.49007 2.06717 2.25656 2.38875 2.79883 2.95564 2.98720 3.00857 3.12943 3.51848 3.65332 3.81276 4.01141 4.16716 4.37128 4.48861 4.51234 4.67726 4.80451 4.90035 5.00814 5.03995 5.21804 5.38668 5.47161 5.54533 5.58418 5.60536 5.61896 5.74977 5.93905 5.97707 6.18988 6.25842 6.59312 6.81965 6.91962 7.12346 7.20674 7.45921 7.63490 7.72044 7.90071 7.94864 8.13451 8.48082 8.72709 8.80907 10.01368 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.027727 B = 0.001897 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.600633 B =14759.788793 C =15157.372756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.613 4.613 5 S 2.444 3.556 6 O -0.918 6.918 7 O -0.914 6.914 8 C -0.638 4.638 9 C 0.486 3.514 10 O -0.508 6.508 11 O -0.337 6.337 12 C 0.132 3.868 13 C -0.240 4.240 14 C -0.074 4.074 15 C -0.171 4.171 16 C 0.119 3.881 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.230 4.230 26 C -0.062 4.062 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.284 0.716 43 H 0.096 0.904 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 16.726 -11.034 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.742 4.742 5 S 2.622 3.378 6 O -0.915 6.915 7 O -0.911 6.911 8 C -0.762 4.762 9 C 0.328 3.672 10 O -0.398 6.398 11 O -0.253 6.253 12 C 0.060 3.940 13 C -0.242 4.242 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.483 4.483 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.408 5.408 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.250 4.250 26 C -0.081 4.081 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.459 16.088 -11.883 20.492 hybrid contribution 1.021 0.026 1.428 1.755 sum -3.439 16.114 -10.455 19.514 Atomic orbital electron populations 1.22385 0.93651 1.04980 1.03214 1.20856 0.96975 0.97743 0.94733 1.21810 1.01258 0.94320 1.02504 1.30510 1.12312 1.23363 1.08013 1.07724 0.76299 0.77609 0.76192 1.93597 1.76200 1.74040 1.47644 1.93570 1.26617 1.85506 1.85419 1.30733 1.17001 1.01271 1.27191 1.21838 0.76449 0.87859 0.81069 1.90789 1.37977 1.70908 1.40162 1.86722 1.70776 1.26643 1.41143 1.21937 0.99513 0.74591 0.97939 1.18651 0.97876 1.13439 0.94194 1.20551 0.93494 0.98046 0.97219 1.21303 1.01094 1.05157 0.91479 1.17701 0.90684 0.87355 0.92663 1.19666 0.91608 1.33996 1.03013 0.90111 1.25990 0.97280 0.94388 0.96816 1.69815 1.05497 1.30113 1.35389 0.86305 0.77912 0.81318 0.80894 1.18647 1.20204 1.18853 1.20966 0.98640 1.08617 0.96764 1.20408 0.97159 0.97845 0.92663 0.91531 0.91352 0.89882 0.89421 0.92190 0.91823 0.92128 0.84451 0.84500 0.81372 0.81407 0.91483 0.91422 0.89215 0.86162 0.90503 0.88630 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 8.83 37.16 0.33 -1.04 16 2 C -0.08 -0.55 2.92 -90.62 -0.26 -0.81 16 3 C -0.14 -0.69 9.19 37.16 0.34 -0.35 16 4 C -0.61 -3.39 5.26 37.16 0.20 -3.19 16 5 S 2.44 25.49 3.76 -107.50 -0.40 25.09 16 6 O -0.92 -13.04 17.95 -59.53 -1.07 -14.10 16 7 O -0.91 -12.31 15.31 -59.53 -0.91 -13.23 16 8 C -0.64 -6.22 6.40 36.00 0.23 -5.99 16 9 C 0.49 7.82 7.98 36.00 0.29 8.11 16 10 O -0.51 -9.55 15.37 -21.37 -0.33 -9.87 16 11 O -0.34 -6.14 10.20 -39.27 -0.40 -6.54 16 12 C 0.13 2.51 5.58 36.01 0.20 2.71 16 13 C -0.24 -5.26 5.54 -104.33 -0.58 -5.83 16 14 C -0.07 -1.71 9.67 -39.66 -0.38 -2.10 16 15 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 16 C 0.12 3.07 5.58 -106.82 -0.60 2.48 16 17 C -0.45 -11.58 9.05 -37.74 -0.34 -11.92 16 18 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.78 -19.46 10.95 55.55 0.61 -18.85 16 21 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 26 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.78 5.41 -51.93 -0.28 0.50 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.17 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.17 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 42 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 43 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -33.84 383.26 -10.02 -43.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.49 Total: 3.61 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -1.77 Total: -28.54 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.61 Total: -18.85 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.71 Total: -43.75 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 25.49 SS G_CDS: -0.40 Total: 25.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.84 -10.02 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271880970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.821 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds