Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 C 1.52998 * 109.47400 * 120.00133 * 2 1 3 5 5 S 1.81401 * 109.46922 * 64.99600 * 4 2 1 6 6 O 1.42106 * 108.57827 * 65.51705 * 5 4 2 7 7 O 1.42096 * 108.58208 * 294.48936 * 5 4 2 8 8 C 1.81396 * 101.92231 * 180.02562 * 5 4 2 9 9 C 1.50696 * 109.47349 * 180.02562 * 8 5 4 10 10 O 1.20823 * 120.00135 * 359.97438 * 9 8 5 11 11 O 1.34235 * 119.99963 * 179.97438 * 9 8 5 12 12 C 1.45200 * 116.99794 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47044 * 180.02562 * 12 11 9 14 14 C 1.38633 * 119.74785 * 269.73062 * 13 12 11 15 15 C 1.37616 * 120.24971 * 179.72226 * 14 13 12 16 16 C 1.40726 * 119.74353 * 0.56653 * 15 14 13 17 17 C 1.41392 * 120.24573 * 179.68153 * 16 15 14 18 18 H 1.07998 * 120.00120 * 204.40682 * 17 16 15 19 19 C 1.39945 * 119.99829 * 24.40979 * 17 16 15 20 20 N 1.30824 * 120.00405 * 17.84574 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 197.84402 * 19 17 16 22 22 H 1.48498 * 109.47062 * 59.99965 * 21 19 17 23 23 H 1.48505 * 109.47337 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47130 * 299.99991 * 21 19 17 25 25 C 1.40715 * 119.50640 * 359.70704 * 16 15 14 26 26 C 1.37616 * 119.75074 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.47159 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47087 * 59.99913 * 1 2 3 29 29 H 1.08996 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46823 * 240.00217 * 2 1 3 31 31 H 1.08995 * 109.46887 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47162 * 300.00042 * 3 2 1 33 33 H 1.08994 * 109.47421 * 60.00138 * 3 2 1 34 34 H 1.08999 * 109.46856 * 305.00006 * 4 2 1 35 35 H 1.08992 * 109.47472 * 184.99416 * 4 2 1 36 36 H 1.09001 * 109.47384 * 59.99521 * 8 5 4 37 37 H 1.09001 * 109.46974 * 300.00037 * 8 5 4 38 38 H 1.09004 * 109.47012 * 300.00047 * 12 11 9 39 39 H 1.09003 * 109.47353 * 60.00225 * 12 11 9 40 40 H 1.07996 * 119.87768 * 359.97438 * 14 13 12 41 41 H 1.08002 * 120.13552 * 180.27593 * 15 14 13 42 42 H 0.97002 * 120.00394 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.12445 * 179.97438 * 25 16 15 44 44 H 1.07993 * 119.88115 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 -2.4691 1.1765 6 8 2.2381 -3.0799 0.0872 7 8 0.1433 -2.5529 1.2467 8 6 2.2538 -3.1129 2.7240 9 6 1.9475 -4.5840 2.8382 10 8 1.3247 -5.1409 1.9654 11 8 2.3667 -5.2756 3.9096 12 6 2.0352 -6.6886 3.9530 13 6 2.5832 -7.2944 5.2194 14 6 3.8598 -7.8348 5.2270 15 6 4.3726 -8.3856 6.3791 16 6 3.5913 -8.4096 7.5493 17 6 4.1051 -8.9789 8.7372 18 1 3.4301 -9.3570 9.4907 19 6 5.4884 -9.0523 8.9366 20 7 6.2925 -8.3057 8.2242 21 14 6.1866 -10.2163 10.2199 22 1 5.7975 -11.6103 9.8877 23 1 7.6675 -10.1063 10.2346 24 1 5.6499 -9.8579 11.5574 25 6 2.2947 -7.8633 7.5283 26 6 1.8049 -7.3118 6.3665 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 1.8127 -2.5829 3.5682 37 1 3.3338 -2.9657 2.7269 38 1 0.9520 -6.8084 3.9324 39 1 2.4728 -7.1912 3.0904 40 1 4.4557 -7.8199 4.3264 41 1 5.3691 -8.8021 6.3842 42 1 7.2513 -8.3569 8.3621 43 1 1.6863 -7.8767 8.4205 44 1 0.8099 -6.8923 6.3479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271880970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -170.620166 kcal Electronic energy + Delta-G solvation = -26312.438226 eV Core-core repulsion = 22320.871253 eV Total energy + Delta-G solvation = -3991.566973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72400 -39.55131 -38.13883 -37.83070 -37.49743 -36.83082 -35.72836 -32.88611 -31.85899 -31.25283 -29.04253 -28.69498 -28.03510 -25.68211 -23.02408 -22.89615 -21.88200 -21.43243 -19.91595 -19.29824 -19.13777 -18.16926 -18.01400 -17.68497 -17.22615 -17.03201 -16.63393 -15.94618 -15.75970 -15.60930 -15.56128 -14.87298 -14.49084 -14.46022 -14.23796 -14.00845 -13.87775 -13.66681 -13.56906 -13.44149 -13.16478 -13.08806 -12.98224 -12.88617 -12.73178 -12.67468 -12.48407 -12.21347 -12.16582 -12.05429 -11.96321 -11.82140 -11.74190 -11.54191 -11.32413 -11.19470 -11.06087 -9.47624 -9.37302 -8.71150 -6.42222 -1.23391 0.66963 0.84252 1.08281 1.36810 1.41055 1.50485 1.64176 1.72532 2.18234 2.61204 2.79428 2.96934 3.38272 3.50831 3.71885 3.71979 3.88029 4.00218 4.04579 4.05275 4.18313 4.37522 4.41686 4.45045 4.51335 4.55950 4.65107 4.83284 4.93788 4.98140 5.04091 5.09409 5.21615 5.24552 5.28613 5.36665 5.38401 5.41844 5.62137 5.84375 6.02871 6.10609 6.28789 6.36318 6.61323 6.85684 6.94020 8.25251 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.027727 B = 0.001897 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.600633 B =14759.788793 C =15157.372756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.577 4.577 5 S 2.424 3.576 6 O -0.971 6.971 7 O -0.959 6.959 8 C -0.631 4.631 9 C 0.476 3.524 10 O -0.543 6.543 11 O -0.347 6.347 12 C 0.133 3.867 13 C -0.235 4.235 14 C -0.080 4.080 15 C -0.194 4.194 16 C 0.088 3.912 17 C -0.491 4.491 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.816 5.816 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.245 4.245 26 C -0.064 4.064 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.211 0.789 37 H 0.207 0.793 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.292 0.708 43 H 0.104 0.896 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 19.283 -10.400 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.711 4.711 5 S 2.609 3.391 6 O -0.969 6.969 7 O -0.956 6.956 8 C -0.755 4.755 9 C 0.320 3.680 10 O -0.435 6.435 11 O -0.262 6.262 12 C 0.061 3.939 13 C -0.236 4.236 14 C -0.098 4.098 15 C -0.214 4.214 16 C 0.085 3.915 17 C -0.519 4.519 18 H 0.099 0.901 19 C -0.182 4.182 20 N -0.441 5.441 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.264 4.264 26 C -0.082 4.082 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.228 0.772 37 H 0.224 0.776 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.846 18.612 -11.269 22.095 hybrid contribution 0.739 -0.586 1.082 1.435 sum -3.107 18.025 -10.187 20.937 Atomic orbital electron populations 1.22452 0.94665 1.03568 1.04314 1.20990 0.96344 0.99117 0.94948 1.21821 1.01960 0.92620 1.03320 1.30294 1.14939 1.16579 1.09277 1.07998 0.75316 0.80023 0.75773 1.93533 1.76564 1.76778 1.49989 1.93521 1.29173 1.87053 1.85837 1.30853 1.19841 0.96515 1.28253 1.22932 0.75323 0.90103 0.79657 1.90783 1.39426 1.72219 1.41059 1.86669 1.71284 1.25873 1.42414 1.21767 1.00014 0.75579 0.96531 1.18937 0.97158 1.12328 0.95196 1.20783 0.94323 0.97530 0.97173 1.21278 1.00890 1.06755 0.92445 1.18066 0.91848 0.88349 0.93227 1.19921 0.92819 1.35737 1.03427 0.90072 1.26839 0.97027 0.95416 0.98879 1.69859 1.06091 1.31211 1.36891 0.85203 0.77478 0.78673 0.78107 1.18510 1.19089 1.18157 1.21177 0.98336 1.08902 0.97985 1.20724 0.98392 0.97066 0.92045 0.90214 0.90665 0.92498 0.90310 0.91076 0.91573 0.90922 0.80670 0.80703 0.77232 0.77574 0.90414 0.90967 0.87531 0.87641 0.89764 0.87748 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.83 71.98 0.64 -1.93 16 2 C -0.09 -0.98 2.92 -10.79 -0.03 -1.01 16 3 C -0.14 -0.83 9.19 71.98 0.66 -0.17 16 4 C -0.58 -3.95 5.26 71.98 0.38 -3.57 16 5 S 2.42 47.32 3.76 -56.49 -0.21 47.11 16 6 O -0.97 -27.92 17.95 -125.74 -2.26 -30.18 16 7 O -0.96 -26.00 15.31 -125.75 -1.93 -27.92 16 8 C -0.63 -10.32 6.40 71.23 0.46 -9.87 16 9 C 0.48 14.67 7.98 71.23 0.57 15.24 16 10 O -0.54 -20.51 15.37 24.48 0.38 -20.13 16 11 O -0.35 -12.08 10.20 -51.47 -0.53 -12.61 16 12 C 0.13 4.95 5.58 71.24 0.40 5.35 16 13 C -0.23 -10.14 5.54 -19.67 -0.11 -10.25 16 14 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 15 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 16 C 0.09 4.66 5.58 -21.29 -0.12 4.54 16 17 C -0.49 -25.71 9.05 23.46 0.21 -25.50 16 18 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 19 C 0.03 1.70 5.14 85.26 0.44 2.13 16 20 N -0.82 -41.31 10.95 21.83 0.24 -41.07 16 21 Si 0.99 36.67 29.59 68.60 2.03 38.70 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 C -0.24 -11.79 9.80 22.73 0.22 -11.57 16 26 C -0.06 -2.78 9.67 22.22 0.21 -2.57 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 1.09 5.41 -2.39 -0.01 1.07 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.18 0.00 8.14 -2.39 -0.02 -0.01 16 35 H 0.18 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.21 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.21 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.70 8.07 -2.38 -0.02 2.68 16 39 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 40 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 42 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 43 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -79.03 383.26 3.06 -75.97 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.99 Total: 22.70 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 4.34 Total: -52.57 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.24 Total: -41.07 kcal Atomic # 8 Polarization: -86.51 SS G_CDS: -4.33 Total: -90.84 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Atomic # 16 Polarization: 47.32 SS G_CDS: -0.21 Total: 47.11 kcal Total: -79.03 3.06 -75.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271880970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.653 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds