Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46566 * 2 1 4 4 C 1.50703 * 109.46910 * 240.00491 * 2 1 3 5 5 H 1.07994 * 119.99833 * 237.68627 * 4 2 1 6 6 C 1.37872 * 120.00104 * 57.69589 * 4 2 1 7 7 N 1.31516 * 120.00366 * 6.57530 * 6 4 2 8 8 Si 1.86802 * 119.99990 * 186.58127 * 6 4 2 9 9 H 1.48501 * 109.47085 * 84.98841 * 8 6 4 10 10 H 1.48501 * 109.47463 * 204.99074 * 8 6 4 11 11 H 1.48504 * 109.46799 * 324.99179 * 8 6 4 12 12 C 1.52999 * 109.47382 * 119.99962 * 2 1 3 13 13 S 1.81391 * 109.47137 * 300.00274 * 12 2 1 14 14 O 1.42102 * 110.54439 * 68.37610 * 13 12 2 15 15 O 1.42099 * 110.54328 * 291.62143 * 13 12 2 16 16 N 1.65602 * 104.44895 * 180.02562 * 13 12 2 17 17 C 1.46496 * 120.00188 * 64.99726 * 16 13 12 18 18 C 1.50705 * 109.47256 * 165.00039 * 17 16 13 19 19 C 1.37872 * 119.93596 * 104.72637 * 18 17 16 20 20 C 1.39661 * 119.87383 * 179.75337 * 19 18 17 21 21 C 1.43195 * 120.12797 * 180.25523 * 20 19 18 22 22 N 9.94580 * 112.55419 * 126.87118 * 2 1 3 23 23 C 1.39710 * 119.75184 * 0.54213 * 20 19 18 24 24 C 1.37831 * 119.86937 * 359.70783 * 23 20 19 25 25 C 1.38614 * 119.93808 * 285.00071 * 18 17 16 26 26 F 1.35094 * 119.87602 * 0.02562 * 25 18 17 27 27 H 1.09000 * 109.47135 * 306.66575 * 1 2 3 28 28 H 1.09002 * 109.47388 * 66.66658 * 1 2 3 29 29 H 1.09004 * 109.46685 * 186.66876 * 1 2 3 30 30 H 1.09006 * 109.46810 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47439 * 300.00052 * 3 2 1 32 32 H 1.08997 * 109.47179 * 60.00937 * 3 2 1 33 33 H 0.96998 * 119.99992 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46949 * 180.02562 * 12 2 1 35 35 H 1.09004 * 109.46666 * 60.00335 * 12 2 1 36 36 H 0.97003 * 120.00067 * 245.00145 * 16 13 12 37 37 H 1.09003 * 109.47466 * 285.00356 * 17 16 13 38 38 H 1.08999 * 109.47040 * 45.00228 * 17 16 13 39 39 H 1.08008 * 120.06012 * 0.02562 * 19 18 17 40 40 H 1.07999 * 120.06711 * 179.68669 * 23 20 19 41 41 H 1.08004 * 119.93662 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6836 -1.5661 -1.1320 6 6 1.6605 -0.2675 -2.4822 7 7 0.9754 0.8480 -2.6085 8 14 2.1296 -1.2522 -3.9987 9 1 1.1192 -2.3155 -4.2306 10 1 2.1796 -0.3512 -5.1781 11 1 3.4629 -1.8728 -3.7930 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0280 -0.0185 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9935 17 6 3.5028 -0.7963 4.2052 18 6 3.7883 -1.3241 5.5877 19 6 4.2357 -2.6179 5.7513 20 6 4.5049 -3.1041 7.0326 21 6 4.9750 -4.4452 7.2085 22 7 5.3448 -5.5112 7.3480 23 6 4.3080 -2.2789 8.1427 24 6 3.8554 -0.9889 7.9675 25 6 3.5952 -0.5098 6.6926 26 9 3.1509 0.7552 6.5268 27 1 -0.3633 0.6137 0.8243 28 1 -0.3634 0.4070 -0.9436 29 1 -0.3633 -1.0208 0.1193 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7135 1.1592 -3.4890 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2491 36 1 1.4577 -1.2148 4.5932 37 1 3.9530 -1.4566 3.4640 38 1 3.9239 0.2040 4.1041 39 1 4.3820 -3.2528 4.8899 40 1 4.5096 -2.6513 9.1363 41 1 3.7024 -0.3502 8.8250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451252299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -86.636873 kcal Electronic energy + Delta-G solvation = -27079.995746 eV Core-core repulsion = 23000.903007 eV Total energy + Delta-G solvation = -4079.092738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.98219 -40.50005 -38.09331 -38.08163 -37.62073 -36.85994 -36.32377 -33.61219 -32.33253 -31.93776 -28.28424 -27.65943 -27.23882 -26.85454 -24.79339 -23.27161 -21.37946 -20.27144 -19.73112 -18.71087 -18.57464 -17.86877 -17.74922 -17.27144 -16.85765 -16.68414 -16.54159 -15.84278 -15.34649 -15.08505 -14.98373 -14.90030 -14.75560 -14.64524 -14.40095 -14.36636 -14.28154 -13.74275 -13.58353 -13.53724 -13.14528 -13.00795 -12.93382 -12.85628 -12.79480 -12.71397 -12.45727 -12.18392 -12.12775 -12.00057 -11.90988 -11.53203 -11.34325 -10.71419 -10.39956 -10.35539 -10.12027 -9.76735 -8.01222 -6.19073 -0.62540 -0.41230 0.12156 1.46189 1.48335 1.55690 1.59652 1.70528 2.03665 2.46231 2.73071 2.76072 2.90951 3.16753 3.21189 3.33769 3.46598 3.70820 3.99719 4.05499 4.14143 4.24708 4.38079 4.46965 4.63108 4.72234 4.78661 4.87078 4.89275 4.92389 5.02246 5.03366 5.12391 5.12545 5.16726 5.42783 5.52836 5.66222 5.67685 6.00578 6.10468 6.15549 6.37427 6.43528 6.86313 7.49182 8.98390 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002932 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.006133 B = 9548.291868 C =10739.281660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.516 4.516 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.266 1.266 12 C -0.585 4.585 13 S 2.611 3.389 14 O -0.994 6.994 15 O -0.990 6.990 16 N -1.112 6.112 17 C 0.143 3.857 18 C -0.139 4.139 19 C -0.015 4.015 20 C -0.047 4.047 21 C 0.283 3.717 22 N -0.462 5.462 23 C -0.018 4.018 24 C -0.150 4.150 25 C 0.131 3.869 26 F -0.140 7.140 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.423 0.577 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 -5.918 21.273 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.555 4.555 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.190 1.190 12 C -0.718 4.718 13 S 2.709 3.291 14 O -0.984 6.984 15 O -0.979 6.979 16 N -0.872 5.872 17 C 0.018 3.982 18 C -0.142 4.142 19 C -0.036 4.036 20 C -0.051 4.051 21 C -0.032 4.032 22 N -0.138 5.138 23 C -0.039 4.039 24 C -0.168 4.168 25 C 0.110 3.890 26 F -0.118 7.118 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.259 0.741 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.183 0.817 40 H 0.190 0.810 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.886 -6.513 21.329 23.654 hybrid contribution -0.196 -0.154 -1.281 1.305 sum 7.689 -6.667 20.048 22.483 Atomic orbital electron populations 1.22168 0.98011 0.99886 1.01657 1.17912 0.92111 0.92199 0.91065 1.22251 0.99942 0.98418 1.01315 1.21316 1.29937 1.13954 0.90319 0.91523 1.25669 0.95313 0.95592 1.01622 1.69959 1.39457 1.21391 1.23823 0.85664 0.78850 0.78544 0.79112 1.20394 1.21605 1.19033 1.30461 1.12933 1.13467 1.14924 1.04784 0.73504 0.74880 0.75916 1.93516 1.31531 1.87031 1.86345 1.93510 1.78400 1.40077 1.85953 1.55448 1.14616 1.70851 1.46316 1.20416 0.79899 1.03354 0.94488 1.19663 1.05568 0.94897 0.94077 1.21161 0.92305 0.93074 0.97057 1.15970 1.07279 0.86698 0.95107 1.25700 0.92388 0.92452 0.92668 1.81383 1.10931 1.12887 1.08563 1.21351 0.92131 0.91151 0.99229 1.21328 1.02329 0.97344 0.95816 1.18284 0.96359 0.79344 0.95027 1.91567 1.86255 1.37556 1.96450 0.95332 0.91307 0.93827 0.93942 0.91083 0.94984 0.93001 0.83897 0.84021 0.74100 0.86897 0.89679 0.81705 0.81041 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 7.58 71.98 0.55 -7.18 16 2 C 0.07 3.20 0.52 -52.93 -0.03 3.18 16 3 C -0.16 -7.80 7.79 71.98 0.56 -7.24 16 4 C -0.52 -25.92 8.01 25.60 0.20 -25.72 16 5 H 0.07 3.17 7.75 -2.91 -0.02 3.14 16 6 C 0.02 0.90 5.09 84.65 0.43 1.34 16 7 N -0.91 -49.65 9.39 21.45 0.20 -49.45 16 8 Si 0.95 41.25 29.54 68.60 2.03 43.28 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 C -0.59 -20.16 5.01 71.98 0.36 -19.80 16 13 S 2.61 88.04 4.49 -56.49 -0.25 87.78 16 14 O -0.99 -39.57 15.84 -127.65 -2.02 -41.60 16 15 O -0.99 -39.23 15.11 -127.65 -1.93 -41.16 16 16 N -1.11 -24.76 5.88 -190.79 -1.12 -25.88 16 17 C 0.14 2.47 5.93 85.64 0.51 2.97 16 18 C -0.14 -1.84 5.28 -19.86 -0.10 -1.94 16 19 C -0.01 -0.14 9.37 22.53 0.21 0.07 16 20 C -0.05 -0.42 5.73 -21.34 -0.12 -0.54 16 21 C 0.28 3.88 15.33 88.32 1.35 5.23 16 22 N -0.46 -9.25 18.54 19.02 0.35 -8.90 16 23 C -0.02 -0.10 9.75 22.53 0.22 0.12 16 24 C -0.15 -1.15 10.01 22.27 0.22 -0.93 16 25 C 0.13 1.85 7.25 22.46 0.16 2.01 16 26 F -0.14 -2.90 16.74 44.97 0.75 -2.15 16 27 H 0.03 1.33 5.96 -2.39 -0.01 1.31 16 28 H 0.07 3.67 5.99 -2.39 -0.01 3.66 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 3.80 6.01 -2.39 -0.01 3.79 16 32 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 33 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16 35 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 36 H 0.42 7.87 8.61 -96.74 -0.83 7.03 16 37 H 0.11 1.27 7.95 -2.39 -0.02 1.25 16 38 H 0.08 1.70 7.63 -2.39 -0.02 1.68 16 39 H 0.17 0.95 8.00 -2.91 -0.02 0.93 16 40 H 0.17 0.04 8.06 -2.91 -0.02 0.01 16 41 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -72.76 359.86 2.79 -69.97 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.25 Total: 16.52 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 4.53 Total: -48.42 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -0.57 Total: -84.23 kcal Atomic # 8 Polarization: -78.80 SS G_CDS: -3.95 Total: -82.75 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.75 Total: -2.15 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 88.04 SS G_CDS: -0.25 Total: 87.78 kcal Total: -72.76 2.79 -69.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451252299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.667 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds