Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.50699 * 109.46961 * 240.00116 * 2 1 3 5 5 H 1.07998 * 120.00316 * 239.99645 * 4 2 1 6 6 C 1.37883 * 120.00070 * 59.99971 * 4 2 1 7 7 N 1.31514 * 119.99766 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47412 * 60.00060 * 8 6 4 10 10 H 1.48507 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47241 * 299.99735 * 8 6 4 12 12 C 1.52997 * 109.47252 * 120.00112 * 2 1 3 13 13 S 1.81397 * 109.47361 * 299.99876 * 12 2 1 14 14 O 1.42101 * 110.53947 * 68.37494 * 13 12 2 15 15 O 1.42103 * 110.54282 * 291.62956 * 13 12 2 16 16 N 1.65600 * 104.45386 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00018 * 64.99734 * 16 13 12 18 18 C 1.50699 * 109.47073 * 165.00303 * 17 16 13 19 19 C 1.38444 * 119.82621 * 270.02214 * 18 17 16 20 20 C 1.37871 * 120.21641 * 179.71857 * 19 18 17 21 21 C 1.39690 * 119.86917 * 0.53951 * 20 19 18 22 22 C 1.43205 * 120.16668 * 179.74470 * 21 20 19 23 23 N 9.95243 * 139.62349 * 157.35034 * 12 1 2 24 24 C 1.39857 * 119.66012 * 359.46446 * 21 20 19 25 25 F 1.35111 * 120.10749 * 180.27858 * 24 21 20 26 26 C 1.38232 * 119.82357 * 90.00329 * 18 17 16 27 27 H 1.08998 * 109.46861 * 299.99734 * 1 2 3 28 28 H 1.08999 * 109.47275 * 59.99938 * 1 2 3 29 29 H 1.09002 * 109.46620 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47409 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47129 * 300.00152 * 3 2 1 32 32 H 1.08998 * 109.47068 * 60.00393 * 3 2 1 33 33 H 0.97002 * 119.99771 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47136 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47058 * 60.00385 * 12 2 1 36 36 H 0.97000 * 120.00067 * 245.00376 * 16 13 12 37 37 H 1.09007 * 109.46907 * 45.00172 * 17 16 13 38 38 H 1.09000 * 109.47274 * 285.00561 * 17 16 13 39 39 H 1.08003 * 119.89316 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.06676 * 180.27393 * 20 19 18 41 41 H 1.07995 * 119.93874 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2205 11 1 3.8075 -1.1188 -4.0078 12 6 2.0401 -0.7213 1.2492 13 16 1.4355 0.1338 2.7304 14 8 0.0281 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9936 17 6 3.5028 -0.7964 4.2053 18 6 3.7883 -1.3242 5.5877 19 6 3.8987 -0.4449 6.6513 20 6 4.1539 -0.9194 7.9203 21 6 4.3127 -2.2912 8.1312 22 6 4.5835 -2.7906 9.4458 23 7 4.7956 -3.1890 10.4887 24 6 4.2002 -3.1748 7.0530 25 9 4.3465 -4.5037 7.2476 26 6 3.9381 -2.6838 5.7871 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7089 1.1615 -3.4844 34 1 3.1301 -0.7216 1.2489 35 1 1.6768 -1.7489 1.2491 36 1 1.4577 -1.2147 4.5933 37 1 3.9239 0.2040 4.1042 38 1 3.9530 -1.4567 3.4641 39 1 3.7804 0.6160 6.4871 40 1 4.2352 -0.2317 8.7491 41 1 3.8507 -3.3638 4.9526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452050422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -85.389604 kcal Electronic energy + Delta-G solvation = -26693.617845 eV Core-core repulsion = 22614.579192 eV Total energy + Delta-G solvation = -4079.038653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.10874 -40.52118 -38.07034 -38.03469 -37.83800 -36.80858 -36.16028 -33.57087 -32.46505 -31.69615 -28.23445 -27.61202 -27.47962 -27.16393 -23.95197 -23.44150 -21.32740 -20.27696 -20.18160 -18.87149 -18.20367 -17.75586 -17.70885 -17.14271 -16.86045 -16.81547 -16.55444 -15.95782 -15.55761 -15.23348 -15.02709 -14.91209 -14.65921 -14.58076 -14.38842 -14.34424 -14.16134 -13.76861 -13.63938 -13.53264 -13.08906 -12.95454 -12.83380 -12.80857 -12.74188 -12.61671 -12.40611 -12.20344 -12.11031 -12.09085 -11.87225 -11.48173 -11.30365 -10.64319 -10.35614 -10.27168 -10.12837 -9.83436 -7.97950 -6.15861 -0.68371 -0.37725 0.12636 1.43733 1.48521 1.49741 1.55862 1.66958 2.08901 2.48174 2.62705 2.64989 2.94776 2.97470 3.24727 3.39935 3.54191 3.71916 4.07792 4.12132 4.16057 4.30035 4.43335 4.53552 4.65833 4.69069 4.84144 4.88866 4.94981 4.96847 4.98849 5.09008 5.10241 5.17129 5.41119 5.47768 5.58645 5.66996 5.70763 6.05809 6.17023 6.19992 6.27189 6.40653 6.89684 7.52395 9.01234 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.002489 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.468065 B =11248.899838 C =11978.855624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.513 4.513 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.271 1.271 12 C -0.588 4.588 13 S 2.617 3.383 14 O -0.995 6.995 15 O -0.986 6.986 16 N -1.110 6.110 17 C 0.137 3.863 18 C -0.033 4.033 19 C -0.107 4.107 20 C -0.030 4.030 21 C -0.069 4.069 22 C 0.273 3.727 23 N -0.452 5.452 24 C 0.133 3.867 25 F -0.140 7.140 26 C -0.131 4.131 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.259 0.741 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.425 0.575 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -4.337 16.718 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.218 1.218 11 H -0.196 1.196 12 C -0.721 4.721 13 S 2.714 3.286 14 O -0.985 6.985 15 O -0.975 6.975 16 N -0.871 5.871 17 C 0.012 3.988 18 C -0.036 4.036 19 C -0.125 4.125 20 C -0.050 4.050 21 C -0.074 4.074 22 C -0.042 4.042 23 N -0.128 5.128 24 C 0.111 3.889 25 F -0.118 7.118 26 C -0.150 4.150 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.261 0.739 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.599 -4.009 18.189 20.116 hybrid contribution 0.097 -1.267 -1.370 1.869 sum 7.696 -5.276 16.819 19.234 Atomic orbital electron populations 1.22224 0.98080 1.00384 1.01269 1.17915 0.92104 0.92284 0.91128 1.22204 1.00017 0.98263 1.01322 1.21293 1.31403 1.12210 0.90348 0.91651 1.25663 0.95342 0.95674 1.01646 1.69943 1.37299 1.23716 1.23728 0.85729 0.78807 0.78673 0.79065 1.19884 1.21773 1.19601 1.30469 1.13029 1.13413 1.15172 1.04651 0.73404 0.74850 0.75717 1.93519 1.31712 1.87045 1.86219 1.93510 1.78374 1.39750 1.85899 1.55430 1.14586 1.70894 1.46208 1.20632 0.79782 1.04176 0.94219 1.19898 0.95705 0.92380 0.95578 1.21470 0.98178 1.02066 0.90810 1.21351 0.93306 0.91368 0.98995 1.16172 1.11637 0.94887 0.84691 1.25696 0.92776 0.92930 0.92794 1.81294 1.10391 1.08314 1.12754 1.17745 1.00644 0.76703 0.93765 1.91544 1.92870 1.31503 1.95887 1.21217 1.01623 0.96553 0.95620 0.94769 0.91398 0.94246 0.93745 0.91527 0.94588 0.93104 0.83758 0.84339 0.73948 0.87884 0.87608 0.81842 0.81353 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.58 7.78 71.98 0.56 -7.02 16 2 C 0.07 3.00 0.52 -52.93 -0.03 2.97 16 3 C -0.16 -7.34 7.78 71.98 0.56 -6.78 16 4 C -0.51 -25.03 8.01 25.60 0.21 -24.83 16 5 H 0.07 3.02 7.74 -2.91 -0.02 2.99 16 6 C 0.02 0.82 5.15 84.66 0.44 1.25 16 7 N -0.91 -48.71 9.35 21.45 0.20 -48.51 16 8 Si 0.95 40.55 29.54 68.60 2.03 42.58 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 12 C -0.59 -18.73 5.01 71.98 0.36 -18.37 16 13 S 2.62 77.74 4.49 -56.49 -0.25 77.48 16 14 O -0.99 -36.44 15.70 -127.65 -2.00 -38.44 16 15 O -0.99 -34.05 15.11 -127.65 -1.93 -35.98 16 16 N -1.11 -19.43 5.88 -190.78 -1.12 -20.55 16 17 C 0.14 1.63 6.25 85.63 0.53 2.17 16 18 C -0.03 -0.31 5.28 -19.82 -0.10 -0.42 16 19 C -0.11 -0.81 9.67 22.23 0.22 -0.60 16 20 C -0.03 -0.23 9.76 22.53 0.22 -0.01 16 21 C -0.07 -0.87 5.74 -21.29 -0.12 -0.99 16 22 C 0.27 4.90 14.98 88.33 1.32 6.22 16 23 N -0.45 -10.53 18.54 19.01 0.35 -10.18 16 24 C 0.13 1.75 7.28 22.67 0.17 1.91 16 25 F -0.14 -2.39 16.81 44.97 0.76 -1.64 16 26 C -0.13 -1.27 9.66 22.28 0.22 -1.05 16 27 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 28 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 32 H 0.04 1.55 5.46 -2.39 -0.01 1.54 16 33 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.42 6.05 8.61 -96.75 -0.83 5.22 16 37 H 0.10 1.22 7.63 -2.38 -0.02 1.20 16 38 H 0.11 0.82 8.08 -2.39 -0.02 0.80 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 41 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -70.18 359.79 2.82 -67.36 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.25 Total: 13.41 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 4.54 Total: -45.53 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -0.57 Total: -79.24 kcal Atomic # 8 Polarization: -70.49 SS G_CDS: -3.93 Total: -74.42 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.64 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 77.74 SS G_CDS: -0.25 Total: 77.48 kcal Total: -70.18 2.82 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452050422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.032 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds