Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 H 1.09003 * 109.47394 * 306.75894 * 3 2 1 5 5 C 1.50698 * 109.47138 * 186.75872 * 3 2 1 6 6 H 1.08005 * 120.00147 * 244.95099 * 5 3 2 7 7 C 1.37879 * 120.00027 * 64.94351 * 5 3 2 8 8 N 1.31515 * 119.99947 * 186.05550 * 7 5 3 9 9 Si 1.86793 * 120.00119 * 6.05522 * 7 5 3 10 10 H 1.48496 * 109.47482 * 270.00144 * 9 7 5 11 11 H 1.48503 * 109.46832 * 30.00096 * 9 7 5 12 12 H 1.48503 * 109.47014 * 149.99740 * 9 7 5 13 13 N 1.46505 * 109.47317 * 66.75686 * 3 2 1 14 14 C 1.34766 * 120.00033 * 274.99880 * 13 3 2 15 15 O 1.21372 * 120.00287 * 0.02562 * 14 13 3 16 16 C 1.49312 * 120.00002 * 179.97438 * 14 13 3 17 17 O 1.21396 * 120.00003 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00328 * 179.97438 * 16 14 13 19 19 C 1.39868 * 120.00297 * 184.97081 * 18 16 14 20 20 C 1.38802 * 120.09721 * 29.96646 * 19 18 16 21 21 C 1.38167 * 120.04118 * 179.69464 * 20 19 18 22 22 C 1.38361 * 120.23042 * 0.60300 * 21 20 19 23 23 C 1.38331 * 120.19223 * 359.67318 * 22 21 20 24 24 F 1.35103 * 120.01994 * 180.02562 * 23 22 21 25 25 C 1.38972 * 119.95984 * 0.02562 * 23 22 21 26 26 S 1.76199 * 120.11823 * 180.02562 * 25 23 22 27 27 C 1.81396 * 102.99919 * 269.97801 * 26 25 23 28 28 H 1.09003 * 109.47285 * 299.99865 * 1 2 3 29 29 H 1.09000 * 109.47166 * 60.00388 * 1 2 3 30 30 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46739 * 239.99719 * 2 1 3 32 32 H 1.09003 * 109.46909 * 120.00329 * 2 1 3 33 33 H 0.97006 * 120.00225 * 354.97736 * 8 7 5 34 34 H 0.97000 * 119.99585 * 94.99903 * 13 3 2 35 35 H 0.97007 * 119.99703 * 4.97487 * 18 16 14 36 36 H 1.08007 * 119.97644 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.88582 * 180.27562 * 21 20 19 38 38 H 1.08004 * 119.90221 * 179.70253 * 22 21 20 39 39 H 1.09003 * 109.47351 * 59.99858 * 27 26 25 40 40 H 1.09005 * 109.47526 * 179.97438 * 27 26 25 41 41 H 1.09001 * 109.47294 * 299.99817 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5813 1.9900 -0.8233 5 6 3.5377 1.4458 -0.1672 6 1 4.1692 1.8095 0.6299 7 6 4.1017 0.9844 -1.3377 8 7 5.4083 0.8754 -1.4397 9 14 3.0100 0.5143 -2.7787 10 1 2.6487 -0.9225 -2.6780 11 1 1.7748 1.3383 -2.7532 12 1 3.7386 0.7537 -4.0504 13 7 1.6889 2.0846 1.2691 14 6 0.4756 2.6501 1.4252 15 8 -0.3265 2.6270 0.5145 16 6 0.1175 3.3040 2.7189 17 8 0.9195 3.3267 3.6299 18 7 -1.0957 3.8700 2.8748 19 6 -1.3942 4.5726 4.0468 20 6 -0.3862 5.2247 4.7433 21 6 -0.6835 5.9237 5.8975 22 6 -1.9829 5.9665 6.3708 23 6 -2.9940 5.3153 5.6874 24 9 -4.2618 5.3599 6.1524 25 6 -2.7051 4.6151 4.5223 26 16 -3.9899 3.7847 3.6481 27 6 -3.9902 2.1321 4.3961 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.9788 1.1873 -0.7197 34 1 2.3297 2.1027 1.9971 35 1 -1.7618 3.7901 2.1742 36 1 0.6304 5.1896 4.3804 37 1 0.1021 6.4339 6.4351 38 1 -2.2085 6.5105 7.2762 39 1 -4.1961 2.2163 5.4632 40 1 -4.7596 1.5202 3.9252 41 1 -3.0154 1.6668 4.2498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595006782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -83.821562 kcal Electronic energy + Delta-G solvation = -27117.200830 eV Core-core repulsion = 23038.230173 eV Total energy + Delta-G solvation = -4078.970657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.26338 -41.12533 -39.39420 -38.14325 -35.82296 -34.98613 -32.55366 -31.62961 -31.18505 -30.10391 -29.10960 -27.60971 -25.24160 -23.57968 -22.83038 -22.28683 -20.61312 -19.81455 -19.13362 -18.38253 -17.67650 -17.44104 -16.70264 -16.43702 -16.02413 -15.75778 -15.60210 -15.44185 -15.26087 -14.49204 -14.24944 -13.95352 -13.76897 -13.52474 -13.42623 -13.39353 -12.95029 -12.78363 -12.60730 -12.53107 -12.38625 -12.00006 -11.94459 -11.42802 -11.06959 -10.87338 -10.83771 -10.76561 -10.58992 -9.93164 -9.80747 -9.39961 -9.16125 -9.01592 -8.65112 -8.59225 -8.38495 -8.12368 -6.65530 -4.34556 0.34092 0.69519 1.31420 1.59646 2.22577 2.33301 3.12045 3.28761 3.38250 3.44332 3.51008 3.70933 3.91300 4.32534 4.43714 4.51235 4.74388 4.85205 4.88524 4.88821 4.95141 5.09797 5.33239 5.44853 5.60320 5.62618 5.86609 5.91342 5.92261 5.97332 6.05385 6.43347 6.49673 6.58800 6.67246 6.77467 6.84150 7.04109 7.15526 7.40702 7.56231 8.06996 8.17712 8.38328 8.68451 9.36644 10.75589 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.002865 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.357963 B = 9771.817085 C =10696.525430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.240 3.760 4 H 0.055 0.945 5 C -0.614 4.614 6 H 0.065 0.935 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.286 1.286 13 N -0.659 5.659 14 C 0.495 3.505 15 O -0.524 6.524 16 C 0.509 3.491 17 O -0.498 6.498 18 N -0.645 5.645 19 C 0.228 3.772 20 C -0.145 4.145 21 C -0.042 4.042 22 C -0.182 4.182 23 C 0.164 3.836 24 F -0.122 7.122 25 C -0.198 4.198 26 S -0.124 6.124 27 C -0.137 4.137 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.432 0.568 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 7.245 14.485 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.137 3.863 4 H 0.073 0.927 5 C -0.652 4.652 6 H 0.083 0.917 7 C -0.169 4.169 8 N -0.533 5.533 9 Si 0.876 3.124 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.402 6.402 16 C 0.292 3.708 17 O -0.370 6.370 18 N -0.293 5.293 19 C 0.128 3.872 20 C -0.167 4.167 21 C -0.061 4.061 22 C -0.203 4.203 23 C 0.141 3.859 24 F -0.100 7.100 25 C -0.312 4.312 26 S 0.107 5.893 27 C -0.305 4.305 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.274 0.726 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.417 6.875 12.009 22.245 hybrid contribution 0.635 0.164 2.812 2.888 sum -16.782 7.038 14.822 23.471 Atomic orbital electron populations 1.21923 0.97056 0.99450 1.02036 1.22287 0.94090 0.99476 1.01911 1.19496 0.96824 0.88901 0.81078 0.92708 1.22143 0.89344 1.49229 1.04501 0.91680 1.25718 0.97806 0.93570 0.99771 1.70825 1.03605 1.42080 1.36794 0.83961 0.75295 0.77224 0.75892 1.20579 1.19773 1.21238 1.46205 1.13097 1.52669 1.18808 1.19528 0.84634 0.81554 0.86930 1.90769 1.49263 1.58828 1.41307 1.21046 0.81524 0.78683 0.89557 1.90750 1.48724 1.55961 1.41613 1.43580 1.16439 1.50925 1.18364 1.17560 0.91896 0.90656 0.87080 1.21415 1.00440 0.97962 0.96884 1.21096 0.95720 0.94963 0.94336 1.21140 0.92487 1.04079 1.02556 1.17417 0.79615 0.96862 0.92015 1.91552 1.36539 1.94351 1.87564 1.21445 0.97273 1.11329 1.01203 1.85510 1.42694 1.10736 1.50392 1.23642 1.06334 0.96257 1.04264 0.93411 0.92629 0.94523 0.91677 0.92371 0.91948 0.75892 0.72642 0.82949 0.83888 0.84022 0.90208 0.87348 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.55 37.16 0.32 -2.39 16 2 C -0.14 -2.90 5.18 -26.73 -0.14 -3.04 16 3 C 0.24 5.41 1.80 -69.08 -0.12 5.28 16 4 H 0.06 1.33 6.08 -51.93 -0.32 1.02 16 5 C -0.61 -16.02 9.10 -34.44 -0.31 -16.33 16 6 H 0.07 1.79 7.95 -52.48 -0.42 1.37 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -26.26 13.70 55.43 0.76 -25.51 16 9 Si 1.05 24.29 25.34 -169.99 -4.31 19.98 16 10 H -0.28 -6.11 6.75 56.52 0.38 -5.73 16 11 H -0.27 -6.01 6.37 56.52 0.36 -5.65 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.66 -12.86 5.03 -55.41 -0.28 -13.14 16 14 C 0.50 8.84 6.54 -11.65 -0.08 8.77 16 15 O -0.52 -10.06 13.63 5.48 0.07 -9.99 16 16 C 0.51 7.81 7.65 -11.65 -0.09 7.72 16 17 O -0.50 -8.08 13.93 5.46 0.08 -8.00 16 18 N -0.65 -8.50 5.08 -10.16 -0.05 -8.55 16 19 C 0.23 2.80 6.35 -83.51 -0.53 2.27 16 20 C -0.15 -1.65 8.67 -39.40 -0.34 -1.99 16 21 C -0.04 -0.36 10.04 -39.56 -0.40 -0.76 16 22 C -0.18 -1.56 10.02 -39.50 -0.40 -1.96 16 23 C 0.16 1.74 7.27 -39.28 -0.29 1.46 16 24 F -0.12 -1.33 16.75 2.25 0.04 -1.29 16 25 C -0.20 -2.30 5.72 -38.84 -0.22 -2.52 16 26 S -0.12 -1.37 20.72 -107.50 -2.23 -3.60 16 27 C -0.14 -1.23 10.72 101.05 1.08 -0.15 16 28 H 0.05 0.86 5.60 -51.93 -0.29 0.57 16 29 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.41 4.39 -51.93 -0.23 1.18 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.27 7.82 8.72 -40.82 -0.36 7.47 16 34 H 0.41 7.58 8.00 -40.82 -0.33 7.25 16 35 H 0.43 5.49 7.29 -40.82 -0.30 5.19 16 36 H 0.15 1.87 6.15 -52.48 -0.32 1.54 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -29.17 356.37 -6.94 -36.11 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.78 Total: 11.31 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.61 Total: -2.70 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.43 Total: -47.20 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.15 Total: -17.99 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.31 Total: 19.98 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.23 Total: -3.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.17 -6.94 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.707 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds