Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47264 * 2 1 4 4 H 1.09001 * 109.46730 * 54.99705 * 3 2 1 5 5 C 1.50696 * 109.47092 * 174.99921 * 3 2 1 6 6 H 1.08004 * 119.99742 * 120.00283 * 5 3 2 7 7 C 1.37872 * 120.00392 * 300.00207 * 5 3 2 8 8 N 1.31519 * 120.00004 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00386 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47398 * 89.99669 * 9 7 5 11 11 H 1.48501 * 109.47118 * 209.99703 * 9 7 5 12 12 H 1.48498 * 109.46668 * 329.99712 * 9 7 5 13 13 N 1.46503 * 109.46954 * 294.99963 * 3 2 1 14 14 C 1.34781 * 119.99866 * 85.00139 * 13 3 2 15 15 O 1.21370 * 119.99890 * 359.97438 * 14 13 3 16 16 C 1.49313 * 119.99959 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99832 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00051 * 179.72512 * 16 14 13 19 19 C 1.39864 * 120.00003 * 174.63811 * 18 16 14 20 20 C 1.38809 * 120.09753 * 335.13789 * 19 18 16 21 21 C 1.38168 * 120.03793 * 179.70412 * 20 19 18 22 22 C 1.38359 * 120.23667 * 0.59692 * 21 20 19 23 23 C 1.38336 * 120.18611 * 359.67740 * 22 21 20 24 24 F 1.35101 * 120.01691 * 179.97438 * 23 22 21 25 25 C 1.38972 * 119.96236 * 0.02562 * 23 22 21 26 26 S 1.76205 * 120.11579 * 180.02562 * 25 23 22 27 27 C 1.81401 * 103.00003 * 269.97938 * 26 25 23 28 28 H 1.09008 * 109.47377 * 60.00077 * 1 2 3 29 29 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47291 * 299.99892 * 1 2 3 31 31 H 1.08997 * 109.47291 * 240.00108 * 2 1 3 32 32 H 1.08998 * 109.47421 * 119.99948 * 2 1 3 33 33 H 0.96996 * 120.00609 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00142 * 264.99703 * 13 3 2 35 35 H 0.97002 * 119.99977 * 354.62954 * 18 16 14 36 36 H 1.07996 * 119.97555 * 359.97438 * 20 19 18 37 37 H 1.08004 * 119.88241 * 180.30298 * 21 20 19 38 38 H 1.07999 * 119.90714 * 179.70478 * 22 21 20 39 39 H 1.08999 * 109.46452 * 180.02562 * 27 26 25 40 40 H 1.08995 * 109.47128 * 300.00042 * 27 26 25 41 41 H 1.08996 * 109.46940 * 60.00405 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3818 10 1 6.4417 2.1141 2.0849 11 1 6.4395 -0.3099 2.1549 12 1 6.6134 0.8415 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3402 2.6319 -0.4337 16 6 0.0398 3.3315 -2.6430 17 8 0.8151 3.3635 -3.5766 18 7 -1.1795 3.8936 -2.7601 19 6 -1.5094 4.6150 -3.9120 20 6 -0.5094 5.1963 -4.6795 21 6 -0.8362 5.9035 -5.8205 22 6 -2.1601 6.0461 -6.1966 23 6 -3.1647 5.4756 -5.4357 24 9 -4.4562 5.6175 -5.8059 25 6 -2.8446 4.7574 -4.2899 26 16 -4.1210 4.0284 -3.3181 27 6 -4.5307 5.3392 -2.1330 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8291 -0.0604 2.9502 34 1 2.2719 2.1232 -1.9978 35 1 -1.8284 3.7977 -2.0454 36 1 0.5249 5.0919 -4.3868 37 1 -0.0558 6.3506 -6.4185 38 1 -2.4098 6.6041 -7.0870 39 1 -5.3228 4.9937 -1.4687 40 1 -3.6468 5.5872 -1.5456 41 1 -4.8685 6.2241 -2.6724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595006783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -82.777653 kcal Electronic energy + Delta-G solvation = -26956.746601 eV Core-core repulsion = 22877.821211 eV Total energy + Delta-G solvation = -4078.925390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.21808 -41.04560 -39.24546 -38.00695 -35.62891 -34.86056 -32.49041 -31.13172 -31.04852 -30.03222 -29.09635 -27.34732 -25.15718 -23.54381 -23.25055 -22.28561 -20.39776 -19.58083 -18.98916 -18.23805 -17.65612 -16.88576 -16.32992 -16.13977 -15.92755 -15.67521 -15.43351 -15.35803 -15.15778 -14.39163 -14.28672 -14.12847 -13.73265 -13.51232 -13.40615 -13.30632 -12.80198 -12.78888 -12.55790 -12.17145 -11.98167 -11.64870 -11.37557 -11.26382 -11.02169 -10.92697 -10.87711 -10.60630 -10.39972 -10.31271 -9.73768 -9.22528 -9.18976 -9.09045 -8.61191 -8.49370 -8.11088 -8.07655 -6.21817 -4.31919 0.40131 0.76087 1.34841 1.72591 2.27718 2.43213 3.20329 3.20884 3.27850 3.30209 3.59398 3.80856 3.97829 4.28050 4.49092 4.57551 4.86152 4.90037 4.90240 4.94808 5.05900 5.10611 5.38798 5.46065 5.66142 5.68250 5.99003 6.03799 6.28567 6.33171 6.51245 6.51662 6.85498 6.91752 7.05274 7.07757 7.22538 7.41162 7.56740 7.67352 7.75889 8.03233 8.34587 8.53964 8.79000 9.35101 10.83529 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.002697 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.380123 B =10378.919894 C =11334.308042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.524 6.524 16 C 0.509 3.491 17 O -0.497 6.497 18 N -0.643 5.643 19 C 0.230 3.770 20 C -0.153 4.153 21 C -0.041 4.041 22 C -0.185 4.185 23 C 0.165 3.835 24 F -0.122 7.122 25 C -0.201 4.201 26 S -0.122 6.122 27 C -0.143 4.143 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.429 0.571 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 11.014 -12.868 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.402 6.402 16 C 0.293 3.707 17 O -0.371 6.371 18 N -0.289 5.289 19 C 0.130 3.870 20 C -0.174 4.174 21 C -0.060 4.060 22 C -0.206 4.206 23 C 0.142 3.858 24 F -0.101 7.101 25 C -0.316 4.316 26 S 0.109 5.891 27 C -0.311 4.311 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.270 0.730 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.629 9.802 -12.593 20.351 hybrid contribution 1.200 1.178 0.021 1.682 sum -11.429 10.980 -12.573 20.230 Atomic orbital electron populations 1.21860 0.98227 0.98554 1.01045 1.21969 0.92699 0.99305 1.02843 1.19048 0.94837 0.89438 0.79940 0.92658 1.21192 0.90242 1.39578 1.06634 0.91745 1.24870 0.98856 0.94542 0.95238 1.69879 1.35319 1.37335 1.09292 0.86405 0.84463 0.77704 0.78328 1.20495 1.20997 1.19713 1.46480 1.13261 1.52291 1.19335 1.19447 0.84707 0.81741 0.86794 1.90767 1.51064 1.59149 1.39230 1.21182 0.81263 0.78532 0.89744 1.90703 1.50846 1.55935 1.39580 1.43574 1.16484 1.50026 1.18852 1.17620 0.91719 0.90267 0.87438 1.21580 1.00850 0.98742 0.96258 1.21105 0.95523 0.94497 0.94887 1.21125 0.92334 1.04946 1.02244 1.17410 0.78936 0.96271 0.93188 1.91548 1.34367 1.93568 1.90577 1.21419 0.96169 1.12120 1.01919 1.85759 1.43525 1.22498 1.37336 1.23697 1.05691 1.00822 1.00859 0.94618 0.95378 0.92900 0.94605 0.87790 0.92389 0.76346 0.73021 0.82317 0.83946 0.84114 0.87239 0.90087 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.15 0.32 -2.61 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.39 2.24 -69.08 -0.15 6.24 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.65 11.29 55.43 0.63 -23.02 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.66 -13.42 5.01 -55.40 -0.28 -13.70 16 14 C 0.50 9.32 6.45 -11.65 -0.08 9.24 16 15 O -0.52 -10.75 13.62 5.48 0.07 -10.67 16 16 C 0.51 8.20 7.69 -11.65 -0.09 8.12 16 17 O -0.50 -8.30 13.65 5.45 0.07 -8.22 16 18 N -0.64 -8.94 5.16 -10.16 -0.05 -8.99 16 19 C 0.23 2.95 6.44 -83.51 -0.54 2.41 16 20 C -0.15 -1.79 8.71 -39.40 -0.34 -2.13 16 21 C -0.04 -0.37 10.04 -39.56 -0.40 -0.77 16 22 C -0.19 -1.66 10.02 -39.50 -0.40 -2.06 16 23 C 0.16 1.82 7.27 -39.27 -0.29 1.54 16 24 F -0.12 -1.38 16.75 2.25 0.04 -1.35 16 25 C -0.20 -2.44 5.72 -38.84 -0.22 -2.66 16 26 S -0.12 -1.42 20.63 -107.50 -2.22 -3.64 16 27 C -0.14 -1.22 10.72 101.05 1.08 -0.14 16 28 H 0.03 0.72 5.65 -51.92 -0.29 0.43 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.40 7.56 8.01 -40.82 -0.33 7.23 16 35 H 0.43 5.71 7.11 -40.82 -0.29 5.42 16 36 H 0.16 2.01 5.79 -52.49 -0.30 1.70 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -27.99 361.05 -7.78 -35.77 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.82 Total: 11.63 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.64 Total: 1.75 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.30 Total: -45.71 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.15 Total: -18.90 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.22 Total: -3.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.99 -7.78 -35.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.004 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds