Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47264 * 2 1 4 4 H 1.09001 * 109.46730 * 54.99705 * 3 2 1 5 5 C 1.50696 * 109.47092 * 174.99921 * 3 2 1 6 6 H 1.08004 * 119.99742 * 120.00283 * 5 3 2 7 7 C 1.37872 * 120.00392 * 300.00207 * 5 3 2 8 8 N 1.31519 * 120.00004 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00386 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47398 * 89.99669 * 9 7 5 11 11 H 1.48501 * 109.47118 * 209.99703 * 9 7 5 12 12 H 1.48498 * 109.46668 * 329.99712 * 9 7 5 13 13 N 1.46503 * 109.46954 * 294.99963 * 3 2 1 14 14 C 1.34781 * 119.99866 * 85.00139 * 13 3 2 15 15 O 1.21370 * 119.99890 * 359.97438 * 14 13 3 16 16 C 1.49313 * 119.99959 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99832 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00051 * 179.72512 * 16 14 13 19 19 C 1.39864 * 120.00003 * 174.63811 * 18 16 14 20 20 C 1.38809 * 120.09753 * 335.13789 * 19 18 16 21 21 C 1.38168 * 120.03793 * 179.70412 * 20 19 18 22 22 C 1.38359 * 120.23667 * 0.59692 * 21 20 19 23 23 C 1.38336 * 120.18611 * 359.67740 * 22 21 20 24 24 F 1.35101 * 120.01691 * 179.97438 * 23 22 21 25 25 C 1.38972 * 119.96236 * 0.02562 * 23 22 21 26 26 S 1.76205 * 120.11579 * 180.02562 * 25 23 22 27 27 C 1.81401 * 103.00003 * 269.97938 * 26 25 23 28 28 H 1.09008 * 109.47377 * 60.00077 * 1 2 3 29 29 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47291 * 299.99892 * 1 2 3 31 31 H 1.08997 * 109.47291 * 240.00108 * 2 1 3 32 32 H 1.08998 * 109.47421 * 119.99948 * 2 1 3 33 33 H 0.96996 * 120.00609 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00142 * 264.99703 * 13 3 2 35 35 H 0.97002 * 119.99977 * 354.62954 * 18 16 14 36 36 H 1.07996 * 119.97555 * 359.97438 * 20 19 18 37 37 H 1.08004 * 119.88241 * 180.30298 * 21 20 19 38 38 H 1.07999 * 119.90714 * 179.70478 * 22 21 20 39 39 H 1.08999 * 109.46452 * 180.02562 * 27 26 25 40 40 H 1.08995 * 109.47128 * 300.00042 * 27 26 25 41 41 H 1.08996 * 109.46940 * 60.00405 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3818 10 1 6.4417 2.1141 2.0849 11 1 6.4395 -0.3099 2.1549 12 1 6.6134 0.8415 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3402 2.6319 -0.4337 16 6 0.0398 3.3315 -2.6430 17 8 0.8151 3.3635 -3.5766 18 7 -1.1795 3.8936 -2.7601 19 6 -1.5094 4.6150 -3.9120 20 6 -0.5094 5.1963 -4.6795 21 6 -0.8362 5.9035 -5.8205 22 6 -2.1601 6.0461 -6.1966 23 6 -3.1647 5.4756 -5.4357 24 9 -4.4562 5.6175 -5.8059 25 6 -2.8446 4.7574 -4.2899 26 16 -4.1210 4.0284 -3.3181 27 6 -4.5307 5.3392 -2.1330 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8291 -0.0604 2.9502 34 1 2.2719 2.1232 -1.9978 35 1 -1.8284 3.7977 -2.0454 36 1 0.5249 5.0919 -4.3868 37 1 -0.0558 6.3506 -6.4185 38 1 -2.4098 6.6041 -7.0870 39 1 -5.3228 4.9937 -1.4687 40 1 -3.6468 5.5872 -1.5456 41 1 -4.8685 6.2241 -2.6724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595006783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -99.458421 kcal Electronic energy + Delta-G solvation = -26957.469934 eV Core-core repulsion = 22877.821211 eV Total energy + Delta-G solvation = -4079.648723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.06020 -42.27564 -40.54707 -39.21393 -37.24615 -36.10911 -34.33104 -32.84147 -31.96981 -30.97594 -29.79711 -29.18046 -26.54306 -24.94416 -24.37389 -23.51715 -21.85608 -21.25190 -20.29542 -19.34245 -18.56559 -18.31068 -17.63652 -17.56173 -16.99907 -16.88588 -16.74037 -16.52138 -16.25683 -15.99695 -15.60139 -15.04575 -14.97378 -14.61912 -14.44384 -14.37100 -14.14140 -13.89494 -13.63077 -13.55087 -13.40611 -13.19324 -12.95126 -12.78336 -12.70086 -12.50260 -12.15536 -12.10544 -11.81205 -11.59359 -11.50557 -11.11028 -10.68253 -10.54355 -9.94851 -9.86632 -9.42360 -8.97461 -8.18247 -6.35279 -0.47820 -0.15013 0.44258 0.52190 1.16090 1.45996 1.47385 1.50697 1.57453 2.05471 2.38013 2.46372 2.59968 3.08454 3.11918 3.42295 3.71097 3.80196 4.04416 4.19703 4.21300 4.26237 4.48723 4.54830 4.59322 4.70799 4.73435 4.80528 4.94479 5.02018 5.06843 5.21516 5.23547 5.34133 5.38468 5.56077 5.64602 5.68512 5.77400 5.87606 6.11152 6.37376 6.65943 6.72160 7.07723 7.36579 8.86931 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.002697 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.380123 B =10378.919894 C =11334.308042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.264 1.264 13 N -0.667 5.667 14 C 0.496 3.504 15 O -0.543 6.543 16 C 0.520 3.480 17 O -0.504 6.504 18 N -0.633 5.633 19 C 0.203 3.797 20 C -0.162 4.162 21 C -0.030 4.030 22 C -0.167 4.167 23 C 0.151 3.849 24 F -0.126 7.126 25 C -0.203 4.203 26 S -0.162 6.162 27 C -0.131 4.131 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.267 0.733 34 H 0.410 0.590 35 H 0.429 0.571 36 H 0.149 0.851 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.082 12.336 -14.932 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.793 3.207 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.188 1.188 13 N -0.317 5.317 14 C 0.275 3.725 15 O -0.422 6.422 16 C 0.302 3.698 17 O -0.379 6.379 18 N -0.279 5.279 19 C 0.104 3.896 20 C -0.183 4.183 21 C -0.049 4.049 22 C -0.188 4.188 23 C 0.128 3.872 24 F -0.104 7.104 25 C -0.318 4.318 26 S 0.069 5.931 27 C -0.299 4.299 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.271 0.729 36 H 0.166 0.834 37 H 0.196 0.804 38 H 0.191 0.809 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.563 11.153 -14.697 22.321 hybrid contribution 1.054 0.860 0.615 1.493 sum -11.509 12.014 -14.082 21.796 Atomic orbital electron populations 1.21716 0.96634 0.99689 1.00412 1.21827 0.94058 0.98632 1.01745 1.18652 0.94133 0.89518 0.80238 0.96576 1.21518 0.91153 1.39499 1.06924 0.91183 1.25677 1.03130 0.94179 0.94931 1.70010 1.37022 1.38000 1.09751 0.85402 0.79268 0.77524 0.78512 1.20313 1.20858 1.18790 1.46222 1.14183 1.52820 1.18463 1.19859 0.83872 0.81041 0.87704 1.90753 1.51465 1.59595 1.40357 1.20391 0.82131 0.78904 0.88354 1.90705 1.51307 1.56566 1.39279 1.43386 1.15388 1.49636 1.19517 1.17740 0.92460 0.91730 0.87626 1.21659 1.00093 0.99362 0.97216 1.21478 0.96514 0.93083 0.93782 1.21516 0.91606 1.03342 1.02330 1.17629 0.79354 0.96837 0.93339 1.91541 1.34685 1.93624 1.90537 1.21453 0.95714 1.12176 1.02422 1.85832 1.43751 1.24882 1.38678 1.23740 1.06199 0.99872 1.00096 0.94189 0.93304 0.94481 0.94117 0.90270 0.92390 0.75463 0.72938 0.83375 0.80393 0.80868 0.85672 0.89988 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.28 13.55 2.24 44.24 0.10 13.65 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -49.88 11.29 21.45 0.24 -49.64 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.67 -27.35 5.01 -447.55 -2.24 -29.60 16 14 C 0.50 18.94 6.45 87.23 0.56 19.51 16 15 O -0.54 -22.81 13.62 -3.31 -0.05 -22.85 16 16 C 0.52 16.73 7.69 87.23 0.67 17.40 16 17 O -0.50 -16.60 13.65 -3.40 -0.05 -16.64 16 18 N -0.63 -17.53 5.16 -304.40 -1.57 -19.10 16 19 C 0.20 5.05 6.44 38.30 0.25 5.30 16 20 C -0.16 -3.53 8.71 22.39 0.20 -3.33 16 21 C -0.03 -0.44 10.04 22.28 0.22 -0.22 16 22 C -0.17 -2.41 10.02 22.32 0.22 -2.19 16 23 C 0.15 3.03 7.27 22.47 0.16 3.20 16 24 F -0.13 -2.62 16.75 44.97 0.75 -1.87 16 25 C -0.20 -4.71 5.72 22.75 0.13 -4.58 16 26 S -0.16 -3.70 20.63 -56.49 -1.17 -4.86 16 27 C -0.13 -2.11 10.72 113.37 1.22 -0.89 16 28 H 0.04 1.63 5.65 -2.38 -0.01 1.61 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.65 7.85 -2.39 -0.02 1.64 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 33 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 34 H 0.41 15.46 8.01 -92.71 -0.74 14.72 16 35 H 0.43 11.56 7.11 -92.71 -0.66 10.90 16 36 H 0.15 3.58 5.79 -2.91 -0.02 3.56 16 37 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -61.21 361.05 2.83 -58.37 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.30 Total: 32.33 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.18 Total: 10.81 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.57 Total: -98.34 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.09 Total: -39.50 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.75 Total: -1.87 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.17 Total: -4.86 kcal Total: -61.21 2.83 -58.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.084 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds