Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47090 * 2 1 4 4 C 1.52997 * 109.47029 * 119.99374 * 2 1 3 5 5 N 1.46504 * 109.47094 * 65.00232 * 4 2 1 6 6 C 1.46506 * 119.99738 * 84.99608 * 5 4 2 7 7 C 1.50699 * 109.46928 * 85.00452 * 6 5 4 8 8 H 1.08003 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99865 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00518 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47000 * 60.00482 * 11 9 7 13 13 H 1.48506 * 109.47330 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47185 * 300.00291 * 11 9 7 15 15 S 1.65593 * 120.00121 * 265.00144 * 5 4 2 16 16 O 1.42098 * 106.40615 * 23.53545 * 15 5 4 17 17 O 1.42104 * 106.40292 * 156.45650 * 15 5 4 18 18 C 1.76204 * 107.21858 * 269.99723 * 15 5 4 19 19 C 1.38340 * 119.85873 * 114.72320 * 18 15 5 20 20 C 1.37937 * 120.17607 * 179.76546 * 19 18 15 21 21 C 1.39655 * 119.89975 * 0.50965 * 20 19 18 22 22 C 1.43196 * 120.13974 * 179.72120 * 21 20 19 23 23 N 9.68637 * 93.00250 * 117.65787 * 2 1 3 24 24 C 1.39582 * 119.72214 * 359.74789 * 21 20 19 25 25 C 1.38205 * 119.81959 * 359.97438 * 24 21 20 26 26 F 1.35097 * 119.94726 * 179.97438 * 25 24 21 27 27 H 1.09001 * 109.46988 * 59.99937 * 1 2 3 28 28 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47557 * 300.00315 * 1 2 3 30 30 H 1.08993 * 109.47403 * 239.99870 * 2 1 3 31 31 H 1.09004 * 109.47249 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47257 * 299.99898 * 3 2 1 33 33 H 1.09002 * 109.47178 * 59.99452 * 3 2 1 34 34 H 1.08999 * 109.47686 * 305.00171 * 4 2 1 35 35 H 1.09000 * 109.47142 * 185.00256 * 4 2 1 36 36 H 1.09004 * 109.47073 * 205.00280 * 6 5 4 37 37 H 1.09000 * 109.47212 * 325.00363 * 6 5 4 38 38 H 0.96992 * 120.00316 * 179.97438 * 10 9 7 39 39 H 1.07998 * 119.91278 * 0.02820 * 19 18 15 40 40 H 1.08009 * 120.05091 * 180.25689 * 20 19 18 41 41 H 1.07994 * 120.09264 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4892 -3.0926 0.4663 7 6 3.5905 -3.5819 1.3711 8 1 3.6599 -3.2149 2.3845 9 6 4.5089 -4.4988 0.9055 10 7 4.4242 -4.9461 -0.3283 11 14 5.8745 -5.1048 2.0268 12 1 5.2811 -5.7645 3.2176 13 1 6.7228 -6.0779 1.2926 14 1 6.7057 -3.9535 2.4614 15 16 0.2685 -2.6433 1.9432 16 8 -0.5712 -1.5026 2.0563 17 8 -0.1287 -3.8385 1.2849 18 6 0.7074 -3.1028 3.5867 19 6 0.2083 -2.3853 4.6590 20 6 0.5438 -2.7422 5.9484 21 6 1.3982 -3.8242 6.1714 22 6 1.7546 -4.1955 7.5076 23 7 2.0373 -4.4902 8.5678 24 6 1.9036 -4.5419 5.0861 25 6 1.5553 -4.1778 3.7992 26 9 2.0434 -4.8703 2.7469 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6442 1.2952 36 1 1.8793 -3.9376 0.1466 37 1 2.9250 -2.6079 -0.4073 38 1 5.0705 -5.5908 -0.6560 39 1 -0.4492 -1.5461 4.4863 40 1 0.1496 -2.1832 6.7843 41 1 2.5644 -5.3799 5.2516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739959639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -57.129848 kcal Electronic energy + Delta-G solvation = -28792.443203 eV Core-core repulsion = 24714.629986 eV Total energy + Delta-G solvation = -4077.813218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.61587 -39.34426 -37.29650 -36.68576 -36.57018 -35.38617 -33.81732 -32.17827 -31.82278 -30.75632 -27.51491 -26.81263 -25.07412 -24.77139 -22.99731 -22.49990 -19.85138 -19.34224 -18.75530 -17.51485 -17.15887 -16.65145 -16.42441 -15.95550 -15.46799 -15.22869 -14.56776 -14.53038 -14.35043 -14.17442 -14.05258 -13.84102 -13.67054 -13.50862 -12.95796 -12.58073 -12.51120 -12.40063 -12.29465 -12.13542 -12.03989 -11.74282 -11.64430 -11.58648 -11.36300 -11.14570 -10.99285 -10.84454 -10.59843 -10.52182 -10.42910 -10.27954 -10.04142 -9.78897 -9.55016 -8.88804 -8.50206 -8.13563 -6.13789 -4.16064 0.10542 0.88544 1.03456 2.34384 2.48418 3.21920 3.27852 3.29365 3.37714 3.43464 3.57294 4.07357 4.28874 4.33242 4.48422 4.67707 4.92047 5.15044 5.19312 5.23014 5.26338 5.33639 5.37818 5.53857 5.65302 5.77687 5.83742 5.89481 5.92067 6.03742 6.13021 6.17903 6.20210 6.38957 6.53885 6.58508 6.67168 6.81529 7.13761 7.26495 7.34803 7.56181 7.80149 8.08297 8.80199 9.45405 10.94531 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008672 B = 0.006584 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.929086 B = 4251.749963 C = 6320.844540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C -0.141 4.141 4 C 0.136 3.864 5 N -0.975 5.975 6 C 0.243 3.757 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.884 3.116 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.277 1.277 15 S 2.684 3.316 16 O -0.963 6.963 17 O -0.946 6.946 18 C -0.699 4.699 19 C 0.003 3.997 20 C -0.120 4.120 21 C 0.046 3.954 22 C 0.256 3.744 23 N -0.404 5.404 24 C -0.140 4.140 25 C 0.223 3.777 26 F -0.067 7.067 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.159 0.841 40 H 0.144 0.856 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 8.391 6.356 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.199 4.199 4 C 0.010 3.990 5 N -0.814 5.814 6 C 0.121 3.879 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.133 4.133 10 N -0.524 5.524 11 Si 0.711 3.289 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.202 1.202 15 S 2.770 3.230 16 O -0.953 6.953 17 O -0.936 6.936 18 C -0.783 4.783 19 C -0.016 4.016 20 C -0.141 4.141 21 C 0.043 3.957 22 C -0.060 4.060 23 N -0.078 5.078 24 C -0.162 4.162 25 C 0.201 3.799 26 F -0.044 7.044 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.066 7.686 7.494 12.852 hybrid contribution 1.531 -0.680 0.684 1.810 sum -5.535 7.006 8.179 12.108 Atomic orbital electron populations 1.21919 0.94718 1.01608 1.01427 1.21566 0.96447 0.95901 0.99877 1.21749 1.00937 0.95809 1.01444 1.21230 1.01397 0.79542 0.96858 1.57387 1.43844 1.15034 1.65140 1.19330 0.89573 0.86917 0.92064 1.21411 1.11931 1.24748 0.98902 0.92434 1.24813 0.97503 0.96034 0.94941 1.69894 1.36387 1.30953 1.15180 0.86786 0.82234 0.78844 0.81011 1.20074 1.21087 1.20215 1.02370 0.73907 0.73671 0.73041 1.93566 1.64808 1.50174 1.86778 1.93606 1.80652 1.47578 1.71768 1.31742 1.12368 1.06890 1.27333 1.20776 0.94322 0.96305 0.90245 1.21198 0.98397 0.96507 0.98006 1.15890 0.98080 0.96468 0.85270 1.25550 0.93953 0.93890 0.92644 1.81258 1.07641 1.07525 1.11418 1.21262 1.02496 1.02135 0.90286 1.16976 0.89371 0.88587 0.84944 1.92008 1.83426 1.76117 1.52848 0.93683 0.93608 0.91400 0.90432 0.92609 0.92882 0.92808 0.91440 0.89818 0.92687 0.93697 0.92491 0.82349 0.83828 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.62 37.15 0.28 -1.74 16 2 C -0.12 -1.68 3.12 -90.62 -0.28 -1.96 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C 0.14 2.11 4.97 -4.04 -0.02 2.09 16 5 N -0.97 -18.18 2.49 -115.66 -0.29 -18.47 16 6 C 0.24 5.55 5.07 -5.19 -0.03 5.52 16 7 C -0.53 -12.85 6.20 -34.44 -0.21 -13.06 16 8 H 0.06 1.34 7.07 -52.48 -0.37 0.97 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 11 Si 0.88 20.00 29.54 -169.99 -5.02 14.98 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 S 2.68 48.36 4.50 -107.50 -0.48 47.87 16 16 O -0.96 -16.11 12.36 -57.17 -0.71 -16.82 16 17 O -0.95 -20.50 15.97 -57.17 -0.91 -21.42 16 18 C -0.70 -11.04 5.92 -39.43 -0.23 -11.27 16 19 C 0.00 0.03 9.53 -39.65 -0.38 -0.35 16 20 C -0.12 -1.24 9.75 -39.16 -0.38 -1.62 16 21 C 0.05 0.56 5.73 -106.94 -0.61 -0.05 16 22 C 0.26 3.17 15.33 -22.47 -0.34 2.82 16 23 N -0.40 -5.67 18.54 41.84 0.78 -4.90 16 24 C -0.14 -1.97 9.74 -39.09 -0.38 -2.35 16 25 C 0.22 3.80 6.65 -39.48 -0.26 3.54 16 26 F -0.07 -1.40 12.26 2.25 0.03 -1.38 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.75 5.78 -51.93 -0.30 0.45 16 29 H 0.07 0.96 7.45 -51.93 -0.39 0.57 16 30 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.90 7.61 -51.93 -0.40 0.51 16 35 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.06 1.40 6.91 -51.93 -0.36 1.05 16 37 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.16 1.54 7.32 -52.49 -0.38 1.15 16 40 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -29.24 357.93 -8.21 -37.45 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.13 Total: -1.23 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.61 Total: -18.00 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 1.22 Total: -46.85 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.62 Total: -38.24 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 48.36 SS G_CDS: -0.48 Total: 47.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.24 -8.21 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739959639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.677 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds