Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 H 1.08996 * 109.47431 * 54.99998 * 3 2 1 5 5 C 1.50703 * 109.46928 * 175.00246 * 3 2 1 6 6 H 1.08000 * 119.99551 * 119.99940 * 5 3 2 7 7 C 1.37874 * 120.00086 * 299.99732 * 5 3 2 8 8 N 1.31514 * 119.99995 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99927 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.46768 * 90.00130 * 9 7 5 11 11 H 1.48496 * 109.46876 * 209.99881 * 9 7 5 12 12 H 1.48502 * 109.46951 * 330.00278 * 9 7 5 13 13 O 1.45199 * 109.46865 * 295.00121 * 3 2 1 14 14 C 1.34229 * 116.99945 * 90.00306 * 13 3 2 15 15 O 1.20819 * 120.00227 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99715 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47550 * 59.99898 * 16 14 13 18 18 C 1.53002 * 109.47429 * 299.99548 * 16 14 13 19 19 C 1.50706 * 109.46964 * 179.97438 * 16 14 13 20 20 C 1.38228 * 120.00056 * 239.99782 * 19 16 14 21 21 C 1.38241 * 119.99915 * 179.97438 * 20 19 16 22 22 C 1.38228 * 119.99681 * 0.02562 * 21 20 19 23 23 S 1.76203 * 119.99649 * 179.97438 * 22 21 20 24 24 C 1.81404 * 104.44838 * 90.00553 * 23 22 21 25 25 O 1.42100 * 104.28012 * 333.93528 * 23 22 21 26 26 O 1.42100 * 104.27885 * 206.07639 * 23 22 21 27 27 C 1.38234 * 120.00757 * 0.25984 * 22 21 20 28 28 C 1.38234 * 119.99689 * 60.02390 * 19 16 14 29 29 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46713 * 299.99956 * 1 2 3 31 31 H 1.08999 * 109.47350 * 59.99678 * 1 2 3 32 32 H 1.09000 * 109.46855 * 239.99605 * 2 1 3 33 33 H 1.08999 * 109.47350 * 120.00322 * 2 1 3 34 34 H 0.96993 * 119.99827 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46673 * 60.00081 * 18 16 14 36 36 H 1.08999 * 109.47654 * 180.02562 * 18 16 14 37 37 H 1.09005 * 109.47213 * 300.00498 * 18 16 14 38 38 H 1.08004 * 120.00119 * 0.02562 * 20 19 16 39 39 H 1.07998 * 119.99727 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47124 * 299.99881 * 24 23 22 41 41 H 1.09001 * 109.46975 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.47147 * 59.99966 * 24 23 22 43 43 H 1.08001 * 120.00506 * 179.72371 * 27 22 21 44 44 H 1.08001 * 120.00591 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8803 1.3361 9 14 3.0964 0.1088 2.5700 10 1 2.8757 -1.3273 2.2633 11 1 3.7938 0.2347 3.8750 12 1 1.7877 0.8073 2.6386 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2559 15 8 -0.2192 2.7370 -0.2655 16 6 0.0075 3.4225 -2.5083 17 1 -0.0712 2.6985 -3.3193 18 6 1.0140 4.5095 -2.8910 19 6 -1.3408 4.0496 -2.2629 20 6 -2.4289 3.6700 -3.0262 21 6 -3.6657 4.2448 -2.8007 22 6 -3.8141 5.1996 -1.8122 23 16 -5.3904 5.9328 -1.5252 24 6 -6.1706 4.8591 -0.2886 25 8 -6.0602 5.8239 -2.7737 26 8 -5.0892 7.2029 -0.9637 27 6 -2.7248 5.5836 -1.0527 28 6 -1.4891 5.0048 -1.2747 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8771 0.4818 2.1127 35 1 1.9890 4.0556 -3.0686 36 1 0.6772 5.0140 -3.7966 37 1 1.0926 5.2336 -2.0799 38 1 -2.3129 2.9237 -3.7983 39 1 -4.5159 3.9479 -3.3968 40 1 -6.2585 3.8488 -0.6882 41 1 -7.1626 5.2421 -0.0489 42 1 -5.5598 4.8409 0.6141 43 1 -2.8398 6.3328 -0.2834 44 1 -0.6390 5.3014 -0.6783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -130.712290 kcal Electronic energy + Delta-G solvation = -27711.966730 eV Core-core repulsion = 23722.130292 eV Total energy + Delta-G solvation = -3989.836438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52409 -39.19868 -37.36864 -36.31137 -36.17729 -34.47903 -33.58934 -31.98661 -31.26250 -30.17009 -29.66595 -27.90870 -25.17155 -23.39481 -23.07516 -22.57939 -20.85572 -19.63742 -19.30025 -18.07286 -17.46231 -16.75631 -16.47382 -16.44586 -16.01595 -15.94501 -15.17882 -15.06694 -14.71172 -14.48820 -13.79015 -13.72545 -13.59391 -13.55495 -13.38426 -13.02909 -12.87999 -12.63579 -12.43122 -12.35485 -12.25141 -12.12617 -11.93388 -11.73080 -11.63281 -11.53202 -11.35367 -11.32752 -11.14712 -10.84562 -10.80449 -10.12829 -9.96713 -9.70204 -9.59192 -9.32999 -9.17151 -9.14714 -8.72808 -6.29920 -4.32688 -0.23307 0.59979 1.16003 2.58232 2.69098 3.06986 3.11934 3.24908 3.26292 3.48244 3.71356 3.82971 4.19255 4.30829 4.41754 4.45581 4.63915 4.69905 4.97271 4.99454 5.03784 5.15541 5.25414 5.28196 5.28686 5.53289 5.64331 5.72412 5.72914 5.79401 5.82510 5.87889 5.90918 5.94504 6.15180 6.31512 6.35084 6.47395 6.57189 6.63820 6.65334 6.97106 7.27666 7.44254 8.13743 8.49515 8.77057 9.26872 10.82041 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002713 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.427735 B =10318.820970 C =10764.631329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.261 1.261 13 O -0.336 6.336 14 C 0.457 3.543 15 O -0.510 6.510 16 C -0.056 4.056 17 H 0.116 0.884 18 C -0.142 4.142 19 C -0.011 4.011 20 C -0.131 4.131 21 C -0.027 4.027 22 C -0.662 4.662 23 S 2.503 3.497 24 C -0.650 4.650 25 O -0.941 6.941 26 O -0.940 6.940 27 C -0.025 4.025 28 C -0.104 4.104 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.270 0.730 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.401 6.260 -6.919 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.144 3.856 4 H 0.064 0.936 5 C -0.564 4.564 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.186 1.186 13 O -0.252 6.252 14 C 0.300 3.700 15 O -0.399 6.399 16 C -0.076 4.076 17 H 0.133 0.867 18 C -0.199 4.199 19 C -0.011 4.011 20 C -0.150 4.150 21 C -0.046 4.046 22 C -0.749 4.749 23 S 2.683 3.317 24 C -0.800 4.800 25 O -0.939 6.939 26 O -0.937 6.937 27 C -0.044 4.044 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.712 6.920 -6.866 22.891 hybrid contribution 0.063 -1.467 1.263 1.937 sum -20.649 5.453 -5.603 22.079 Atomic orbital electron populations 1.21887 0.97012 0.99985 1.01684 1.22370 0.94308 0.99659 1.02274 1.20985 0.96349 0.88034 0.80206 0.93594 1.20780 0.87669 1.40047 1.07891 0.89467 1.24732 0.94938 0.95258 0.97365 1.69829 1.08484 1.44178 1.29834 0.87004 0.80965 0.80136 0.81351 1.19927 1.21631 1.18582 1.86494 1.33999 1.62173 1.42503 1.23046 0.80785 0.76994 0.89221 1.90626 1.55384 1.58307 1.35619 1.20092 0.92859 0.98619 0.95992 0.86653 1.21793 0.98755 0.97149 1.02187 1.19769 0.93726 0.93715 0.93907 1.21144 0.92210 1.00947 1.00685 1.20828 0.98200 0.91916 0.93661 1.30406 1.21044 1.14545 1.08954 1.05004 0.74893 0.75721 0.76050 1.30223 1.13866 1.17249 1.18664 1.93576 1.74071 1.86865 1.39348 1.93584 1.83637 1.36360 1.80096 1.20892 0.91604 0.95884 0.95980 1.21136 0.98008 0.95997 0.97108 0.93953 0.92591 0.93676 0.91207 0.91769 0.91997 0.89828 0.91185 0.91681 0.84884 0.84134 0.84954 0.85140 0.84829 0.84099 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.57 37.16 0.32 -2.47 16 2 C -0.15 -3.23 5.14 -26.73 -0.14 -3.37 16 3 C 0.20 4.73 1.84 -27.88 -0.05 4.68 16 4 H 0.05 1.17 6.21 -51.93 -0.32 0.84 16 5 C -0.53 -14.53 9.48 -34.44 -0.33 -14.86 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 9 Si 0.88 21.06 24.41 -169.99 -4.15 16.91 16 10 H -0.27 -6.29 6.83 56.52 0.39 -5.91 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 O -0.34 -7.09 9.71 -39.26 -0.38 -7.47 16 14 C 0.46 8.16 5.58 36.00 0.20 8.36 16 15 O -0.51 -10.05 12.25 -18.74 -0.23 -10.28 16 16 C -0.06 -0.73 3.00 -92.92 -0.28 -1.01 16 17 H 0.12 1.23 7.87 -51.93 -0.41 0.83 16 18 C -0.14 -1.63 8.94 37.16 0.33 -1.30 16 19 C -0.01 -0.14 4.40 -104.62 -0.46 -0.60 16 20 C -0.13 -1.38 9.67 -39.58 -0.38 -1.76 16 21 C -0.03 -0.27 9.47 -39.58 -0.37 -0.64 16 22 C -0.66 -6.69 5.66 -39.59 -0.22 -6.92 16 23 S 2.50 20.93 5.80 -107.50 -0.62 20.30 16 24 C -0.65 -3.08 10.80 101.05 1.09 -1.99 16 25 O -0.94 -10.42 17.13 -57.54 -0.99 -11.40 16 26 O -0.94 -10.82 17.12 -57.54 -0.98 -11.81 16 27 C -0.02 -0.28 9.47 -39.58 -0.37 -0.65 16 28 C -0.10 -1.32 7.94 -39.58 -0.31 -1.63 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.10 7.80 -51.93 -0.40 0.69 16 31 H 0.04 0.81 6.06 -51.93 -0.31 0.49 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 1.45 3.21 -51.93 -0.17 1.29 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.03 8.11 -51.92 -0.42 0.61 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 38 H 0.13 1.07 7.95 -52.48 -0.42 0.66 16 39 H 0.14 1.07 7.57 -52.49 -0.40 0.68 16 40 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 41 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.14 1.34 7.56 -52.49 -0.40 0.94 16 44 H 0.13 1.70 7.52 -52.49 -0.39 1.31 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -35.80 368.73 -8.28 -44.07 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.17 Total: 1.41 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.08 Total: -22.00 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.29 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.58 Total: -40.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.15 Total: 16.91 kcal Atomic # 16 Polarization: 20.93 SS G_CDS: -0.62 Total: 20.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.80 -8.28 -44.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.639 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds