Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 H 1.08996 * 109.47431 * 54.99998 * 3 2 1 5 5 C 1.50703 * 109.46928 * 175.00246 * 3 2 1 6 6 H 1.08000 * 119.99551 * 119.99940 * 5 3 2 7 7 C 1.37874 * 120.00086 * 299.99732 * 5 3 2 8 8 N 1.31514 * 119.99995 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99927 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.46768 * 90.00130 * 9 7 5 11 11 H 1.48496 * 109.46876 * 209.99881 * 9 7 5 12 12 H 1.48502 * 109.46951 * 330.00278 * 9 7 5 13 13 O 1.45199 * 109.46865 * 295.00121 * 3 2 1 14 14 C 1.34229 * 116.99945 * 90.00306 * 13 3 2 15 15 O 1.20819 * 120.00227 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99715 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47550 * 59.99898 * 16 14 13 18 18 C 1.53002 * 109.47429 * 299.99548 * 16 14 13 19 19 C 1.50706 * 109.46964 * 179.97438 * 16 14 13 20 20 C 1.38228 * 120.00056 * 239.99782 * 19 16 14 21 21 C 1.38241 * 119.99915 * 179.97438 * 20 19 16 22 22 C 1.38228 * 119.99681 * 0.02562 * 21 20 19 23 23 S 1.76203 * 119.99649 * 179.97438 * 22 21 20 24 24 C 1.81404 * 104.44838 * 90.00553 * 23 22 21 25 25 O 1.42100 * 104.28012 * 333.93528 * 23 22 21 26 26 O 1.42100 * 104.27885 * 206.07639 * 23 22 21 27 27 C 1.38234 * 120.00757 * 0.25984 * 22 21 20 28 28 C 1.38234 * 119.99689 * 60.02390 * 19 16 14 29 29 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46713 * 299.99956 * 1 2 3 31 31 H 1.08999 * 109.47350 * 59.99678 * 1 2 3 32 32 H 1.09000 * 109.46855 * 239.99605 * 2 1 3 33 33 H 1.08999 * 109.47350 * 120.00322 * 2 1 3 34 34 H 0.96993 * 119.99827 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46673 * 60.00081 * 18 16 14 36 36 H 1.08999 * 109.47654 * 180.02562 * 18 16 14 37 37 H 1.09005 * 109.47213 * 300.00498 * 18 16 14 38 38 H 1.08004 * 120.00119 * 0.02562 * 20 19 16 39 39 H 1.07998 * 119.99727 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47124 * 299.99881 * 24 23 22 41 41 H 1.09001 * 109.46975 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.47147 * 59.99966 * 24 23 22 43 43 H 1.08001 * 120.00506 * 179.72371 * 27 22 21 44 44 H 1.08001 * 120.00591 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8803 1.3361 9 14 3.0964 0.1088 2.5700 10 1 2.8757 -1.3273 2.2633 11 1 3.7938 0.2347 3.8750 12 1 1.7877 0.8073 2.6386 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2559 15 8 -0.2192 2.7370 -0.2655 16 6 0.0075 3.4225 -2.5083 17 1 -0.0712 2.6985 -3.3193 18 6 1.0140 4.5095 -2.8910 19 6 -1.3408 4.0496 -2.2629 20 6 -2.4289 3.6700 -3.0262 21 6 -3.6657 4.2448 -2.8007 22 6 -3.8141 5.1996 -1.8122 23 16 -5.3904 5.9328 -1.5252 24 6 -6.1706 4.8591 -0.2886 25 8 -6.0602 5.8239 -2.7737 26 8 -5.0892 7.2029 -0.9637 27 6 -2.7248 5.5836 -1.0527 28 6 -1.4891 5.0048 -1.2747 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8771 0.4818 2.1127 35 1 1.9890 4.0556 -3.0686 36 1 0.6772 5.0140 -3.7966 37 1 1.0926 5.2336 -2.0799 38 1 -2.3129 2.9237 -3.7983 39 1 -4.5159 3.9479 -3.3968 40 1 -6.2585 3.8488 -0.6882 41 1 -7.1626 5.2421 -0.0489 42 1 -5.5598 4.8409 0.6141 43 1 -2.8398 6.3328 -0.2834 44 1 -0.6390 5.3014 -0.6783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -155.178956 kcal Electronic energy + Delta-G solvation = -27713.027685 eV Core-core repulsion = 23722.130292 eV Total energy + Delta-G solvation = -3990.897392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84776 -40.26998 -38.12641 -37.83512 -36.97202 -35.72089 -35.26306 -33.89556 -32.07630 -30.96857 -30.19748 -29.75695 -26.27938 -24.97132 -24.03897 -23.84647 -22.33849 -21.08758 -20.02097 -19.21953 -18.79716 -18.44771 -17.83163 -17.28332 -17.11493 -16.96531 -16.57516 -16.23880 -15.68446 -15.54557 -15.32999 -14.85223 -14.59292 -14.36058 -14.15960 -14.02715 -13.94153 -13.90202 -13.80857 -13.62709 -13.23007 -13.21251 -13.13405 -13.10648 -13.03172 -12.91506 -12.57343 -12.50378 -12.10350 -12.04700 -12.00767 -11.62035 -11.55439 -11.52479 -11.20525 -11.08833 -10.74888 -10.20999 -10.00064 -8.46198 -6.54515 -0.84922 -0.24442 0.32940 1.20855 1.27571 1.28776 1.38016 1.85607 1.93321 2.17342 2.50284 2.86215 3.04398 3.20269 3.33319 3.64222 3.84591 3.92674 4.01358 4.08349 4.11196 4.11799 4.16801 4.22661 4.29845 4.34270 4.50530 4.55757 4.70139 4.76354 4.79180 4.92294 4.94154 4.97015 4.97545 5.01655 5.06581 5.08922 5.20607 5.31634 5.35091 5.44274 5.67026 5.83506 6.14786 6.50127 6.89175 7.10882 8.69721 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002713 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.427735 B =10318.820970 C =10764.631329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.147 4.147 3 C 0.203 3.797 4 H 0.029 0.971 5 C -0.538 4.538 6 H 0.047 0.953 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.937 3.063 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.255 1.255 13 O -0.350 6.350 14 C 0.453 3.547 15 O -0.528 6.528 16 C -0.046 4.046 17 H 0.144 0.856 18 C -0.140 4.140 19 C -0.028 4.028 20 C -0.129 4.129 21 C -0.031 4.031 22 C -0.663 4.663 23 S 2.514 3.486 24 C -0.629 4.629 25 O -0.970 6.970 26 O -0.978 6.978 27 C -0.037 4.037 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.275 0.725 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.813 4.872 -7.175 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.148 3.852 4 H 0.047 0.953 5 C -0.576 4.576 6 H 0.065 0.935 7 C -0.169 4.169 8 N -0.569 5.569 9 Si 0.762 3.238 10 H -0.176 1.176 11 H -0.212 1.212 12 H -0.180 1.180 13 O -0.266 6.266 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.065 4.065 17 H 0.162 0.838 18 C -0.197 4.197 19 C -0.029 4.029 20 C -0.148 4.148 21 C -0.050 4.050 22 C -0.748 4.748 23 S 2.697 3.303 24 C -0.783 4.783 25 O -0.968 6.968 26 O -0.975 6.975 27 C -0.056 4.056 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.179 0.821 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.106 5.558 -7.172 25.757 hybrid contribution 1.075 -0.940 1.300 1.932 sum -23.031 4.618 -5.871 24.212 Atomic orbital electron populations 1.21793 0.94387 1.01957 1.01451 1.22272 0.96600 0.97485 1.02107 1.20619 0.93786 0.89741 0.81012 0.95306 1.20992 0.89840 1.39688 1.07090 0.93493 1.25552 0.96037 0.95664 0.99685 1.69957 1.10376 1.45527 1.31006 0.86020 0.79294 0.80288 0.78151 1.17636 1.21222 1.17975 1.86485 1.36166 1.62940 1.40974 1.24046 0.79337 0.76154 0.90814 1.90607 1.55565 1.58770 1.36844 1.20191 0.93374 0.98993 0.93925 0.83790 1.21806 0.98053 0.96720 1.03132 1.19779 0.93888 0.94313 0.94886 1.21474 0.91601 1.01063 1.00654 1.21218 0.98874 0.91408 0.93477 1.30697 1.21576 1.14047 1.08501 1.04638 0.74001 0.75492 0.76145 1.30063 1.14541 1.16805 1.16849 1.93535 1.74036 1.87379 1.41824 1.93536 1.84080 1.39330 1.80572 1.21033 0.91546 0.96287 0.96750 1.21169 0.98263 0.97084 0.97803 0.90809 0.93593 0.93154 0.90802 0.92475 0.91591 0.90972 0.88261 0.92717 0.82100 0.81668 0.82843 0.82690 0.83588 0.83356 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.57 71.98 0.62 -4.24 16 2 C -0.15 -6.21 5.14 30.59 0.16 -6.05 16 3 C 0.20 9.81 1.84 29.85 0.05 9.86 16 4 H 0.03 1.50 6.21 -2.39 -0.01 1.48 16 5 C -0.54 -30.87 9.48 25.60 0.24 -30.62 16 6 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 7 C 0.03 1.73 5.45 84.65 0.46 2.19 16 8 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 9 Si 0.94 43.43 24.41 68.60 1.67 45.10 16 10 H -0.25 -10.73 6.83 99.48 0.68 -10.05 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.52 6.53 99.48 0.65 -10.87 16 13 O -0.35 -14.96 9.71 -51.41 -0.50 -15.46 16 14 C 0.45 16.06 5.58 71.24 0.40 16.46 16 15 O -0.53 -20.71 12.25 21.99 0.27 -20.44 16 16 C -0.05 -1.13 3.00 -12.28 -0.04 -1.17 16 17 H 0.14 2.70 7.87 -2.39 -0.02 2.68 16 18 C -0.14 -3.18 8.94 71.98 0.64 -2.53 16 19 C -0.03 -0.67 4.40 -19.87 -0.09 -0.75 16 20 C -0.13 -2.37 9.67 22.27 0.22 -2.15 16 21 C -0.03 -0.53 9.47 22.27 0.21 -0.32 16 22 C -0.66 -12.29 5.66 22.27 0.13 -12.16 16 23 S 2.51 37.54 5.80 -56.49 -0.33 37.21 16 24 C -0.63 -3.54 10.80 113.37 1.22 -2.31 16 25 O -0.97 -19.77 17.13 -127.65 -2.19 -21.95 16 26 O -0.98 -21.89 17.12 -127.65 -2.19 -24.08 16 27 C -0.04 -0.82 9.47 22.27 0.21 -0.61 16 28 C -0.12 -3.15 7.94 22.27 0.18 -2.98 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.69 7.80 -2.38 -0.02 1.67 16 31 H 0.05 1.69 6.06 -2.39 -0.01 1.67 16 32 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.48 3.21 -2.39 -0.01 2.47 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 1.79 8.11 -2.38 -0.02 1.78 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.33 7.39 -2.38 -0.02 1.32 16 38 H 0.16 1.95 7.95 -2.91 -0.02 1.92 16 39 H 0.17 1.95 7.57 -2.91 -0.02 1.93 16 40 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.15 2.85 7.56 -2.91 -0.02 2.83 16 44 H 0.12 3.20 7.52 -2.91 -0.02 3.18 16 Total: -1.00 -80.39 368.73 2.58 -77.80 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.92 Total: 15.24 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.61 Total: -37.41 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.30 Total: -56.02 kcal Atomic # 8 Polarization: -77.33 SS G_CDS: -4.60 Total: -81.94 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.67 Total: 45.10 kcal Atomic # 16 Polarization: 37.54 SS G_CDS: -0.33 Total: 37.21 kcal Total: -80.39 2.58 -77.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.377 kcal (2) G-P(sol) polarization free energy of solvation -80.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds