Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99883 * 2 1 4 4 N 1.46494 * 109.47139 * 124.99702 * 3 2 1 5 5 C 1.35064 * 125.57094 * 269.95677 * 4 3 2 6 6 O 1.21300 * 127.27853 * 0.02562 * 5 4 3 7 7 C 1.49972 * 105.43359 * 179.83685 * 5 4 3 8 8 O 1.21304 * 127.28588 * 180.25533 * 7 5 4 9 9 N 1.35061 * 105.43341 * 0.33217 * 7 5 4 10 10 C 1.46497 * 125.56544 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.47128 * 269.68864 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 O 1.42899 * 109.47007 * 65.00337 * 15 14 13 17 17 C 1.42908 * 114.00004 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46758 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00495 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99416 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00213 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99461 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47579 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47075 * 120.00304 * 22 20 18 25 25 H 1.48502 * 109.47221 * 239.99867 * 22 20 18 26 26 C 1.34274 * 108.86521 * 359.66363 * 9 7 5 27 27 O 1.21483 * 124.29817 * 180.24852 * 26 9 7 28 28 H 1.08001 * 119.99925 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00097 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00558 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47106 * 4.99625 * 3 2 1 32 32 H 1.08997 * 109.46761 * 244.99800 * 3 2 1 33 33 H 1.09004 * 109.47268 * 149.69004 * 10 9 7 34 34 H 1.08997 * 109.47471 * 29.69411 * 10 9 7 35 35 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 36 36 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 37 37 H 1.09001 * 109.47541 * 185.00107 * 15 14 13 38 38 H 1.09002 * 109.47459 * 305.00456 * 15 14 13 39 39 H 1.08995 * 109.46896 * 299.99942 * 17 16 15 40 40 H 1.09001 * 109.46731 * 60.00092 * 17 16 15 41 41 H 0.96998 * 119.99720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7134 1.7971 2.3681 6 8 1.6641 2.2657 2.7565 7 6 3.9723 1.6074 3.1607 8 8 4.1565 1.8890 4.3261 9 7 4.8584 1.0582 2.3019 10 6 6.2395 0.6895 2.6225 11 6 7.1490 1.8584 2.3440 12 8 6.6905 2.8934 1.9215 13 8 8.4685 1.7498 2.5652 14 6 9.2838 2.9154 2.2741 15 6 10.7488 2.6040 2.5867 16 8 11.2181 1.5841 1.7026 17 6 12.5831 1.2164 1.9118 18 6 12.9691 0.1394 0.9309 19 1 12.2448 -0.2273 0.2187 20 6 14.2475 -0.3771 0.9421 21 7 15.1297 0.0698 1.8090 22 14 14.7259 -1.7125 -0.2733 23 1 13.5610 -2.0383 -1.1348 24 1 15.8479 -1.2328 -1.1196 25 1 15.1493 -2.9277 0.4677 26 6 4.2645 0.8990 1.1082 27 8 4.8079 0.4233 0.1313 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 6.5407 -0.1595 2.0088 34 1 6.3081 0.4187 3.6761 35 1 9.1840 3.1746 1.2202 36 1 8.9520 3.7532 2.8873 37 1 11.3483 3.5045 2.4532 38 1 10.8352 2.2595 3.6172 39 1 13.2208 2.0880 1.7646 40 1 12.7070 0.8429 2.9283 41 1 16.0292 -0.2933 1.8165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815199636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -154.882203 kcal Electronic energy + Delta-G solvation = -28742.115494 eV Core-core repulsion = 24204.937756 eV Total energy + Delta-G solvation = -4537.177739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.89420 -40.61600 -39.73902 -39.33544 -37.28610 -36.98076 -36.50017 -36.08580 -34.22054 -32.81038 -30.93558 -29.80807 -27.39918 -26.85601 -26.08195 -23.37310 -22.60039 -22.44524 -22.08610 -21.13242 -20.56963 -18.64578 -18.46692 -17.64126 -17.57887 -17.17982 -16.84172 -16.70513 -16.39902 -16.04608 -15.78363 -15.49347 -15.41297 -14.98982 -14.84928 -14.67239 -14.34458 -14.06697 -13.67356 -13.56679 -13.24496 -12.88592 -12.76304 -12.57155 -12.10435 -12.02734 -11.53234 -11.50780 -11.29871 -11.00035 -10.90741 -10.81682 -10.76959 -10.58743 -10.52310 -10.35044 -10.10469 -10.07865 -9.15071 -8.92580 -8.25724 -6.14929 -4.16634 -0.20074 0.98916 1.31225 1.85469 1.92843 1.96126 2.04129 2.62554 3.27266 3.33958 3.34480 3.40491 3.96953 4.19656 4.28642 4.33343 4.35682 4.58890 4.64284 4.66191 4.70292 4.72439 4.97016 5.08351 5.10755 5.21880 5.29847 5.36416 5.77780 5.84406 5.94422 5.97705 5.99380 6.03826 6.14002 6.35372 6.62885 6.99222 7.01011 7.35681 7.51399 7.75275 8.08720 8.47393 8.96054 9.48316 10.96587 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002104 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.653201 B =13305.754227 C =14444.168309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.189 4.189 3 C 0.149 3.851 4 N -0.568 5.568 5 C 0.515 3.485 6 O -0.408 6.408 7 C 0.513 3.487 8 O -0.403 6.403 9 N -0.563 5.563 10 C 0.129 3.871 11 C 0.449 3.551 12 O -0.507 6.507 13 O -0.332 6.332 14 C 0.076 3.924 15 C 0.061 3.939 16 O -0.391 6.391 17 C 0.194 3.806 18 C -0.515 4.515 19 H 0.068 0.932 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.714 3.286 27 O -0.475 6.475 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.006 0.994 40 H 0.008 0.992 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.275 1.877 0.539 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C 0.030 3.970 4 N -0.317 5.317 5 C 0.296 3.704 6 O -0.272 6.272 7 C 0.294 3.706 8 O -0.266 6.266 9 N -0.313 5.313 10 C 0.007 3.993 11 C 0.290 3.710 12 O -0.396 6.396 13 O -0.246 6.246 14 C 0.002 3.998 15 C -0.017 4.017 16 O -0.311 6.311 17 C 0.120 3.880 18 C -0.553 4.553 19 H 0.086 0.914 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.208 1.208 26 C 0.417 3.583 27 O -0.342 6.342 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.450 2.261 0.635 28.547 hybrid contribution 0.739 -0.366 -0.448 0.939 sum -27.711 1.894 0.186 27.776 Atomic orbital electron populations 1.24021 0.95537 1.02796 0.96751 1.23139 0.96393 0.98228 1.03045 1.20945 0.91083 0.97664 0.87314 1.46750 1.13037 1.58120 1.13776 1.20754 0.89012 0.78120 0.82545 1.90851 1.25946 1.36829 1.73571 1.20898 0.85633 0.77313 0.86783 1.90875 1.79751 1.42759 1.13238 1.46243 1.13466 1.59269 1.12313 1.21150 0.75146 0.95774 1.07201 1.23555 0.83277 0.89193 0.74993 1.90687 1.76780 1.30424 1.41692 1.86568 1.17589 1.43061 1.77429 1.23321 0.89061 0.84989 1.02384 1.22330 0.90479 0.93599 0.95247 1.87920 1.31714 1.54867 1.56582 1.20257 0.75868 0.95049 0.96846 1.21081 0.96834 1.19809 1.17552 0.91419 1.24959 0.95973 0.97361 0.96271 1.69965 1.04833 1.43059 1.35879 0.86271 0.78509 0.81003 0.80660 1.19435 1.20851 1.20800 1.15828 0.80931 0.78291 0.83218 1.91082 1.66422 1.43726 1.32952 0.87510 0.87875 0.86305 0.87526 0.86802 0.83055 0.83417 0.90198 0.90165 0.91720 0.93003 0.97574 0.97415 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 14.32 29.02 0.42 -0.24 16 2 C -0.19 -1.01 9.85 -36.02 -0.35 -1.36 16 3 C 0.15 0.85 6.30 -5.19 -0.03 0.82 16 4 N -0.57 -4.66 2.64 -122.52 -0.32 -4.98 16 5 C 0.52 4.82 8.31 -11.21 -0.09 4.73 16 6 O -0.41 -4.47 17.88 5.54 0.10 -4.37 16 7 C 0.51 5.20 8.31 -11.21 -0.09 5.11 16 8 O -0.40 -4.88 17.88 5.54 0.10 -4.78 16 9 N -0.56 -5.44 2.15 -122.51 -0.26 -5.70 16 10 C 0.13 1.15 6.45 -5.20 -0.03 1.12 16 11 C 0.45 5.92 8.03 36.01 0.29 6.21 16 12 O -0.51 -7.86 16.18 -18.75 -0.30 -8.16 16 13 O -0.33 -4.98 10.19 -42.04 -0.43 -5.41 16 14 C 0.08 1.13 5.84 37.16 0.22 1.35 16 15 C 0.06 1.06 6.33 37.16 0.24 1.30 16 16 O -0.39 -9.16 10.30 -38.80 -0.40 -9.56 16 17 C 0.19 5.19 5.69 36.01 0.20 5.39 16 18 C -0.51 -14.93 9.43 -34.44 -0.32 -15.26 16 19 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.71 7.09 8.32 -87.81 -0.73 6.36 16 27 O -0.47 -5.79 17.27 5.38 0.09 -5.70 16 28 H 0.11 0.36 8.06 -52.49 -0.42 -0.06 16 29 H 0.10 0.36 7.84 -52.49 -0.41 -0.05 16 30 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.11 0.47 7.75 -51.93 -0.40 0.06 16 32 H 0.11 0.59 7.98 -51.93 -0.41 0.17 16 33 H 0.15 1.10 7.98 -51.93 -0.41 0.68 16 34 H 0.15 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 36 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -36.04 381.98 -5.34 -41.38 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -4.99 Total: -6.30 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -0.40 Total: 17.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.15 Total: -36.42 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.84 Total: -37.98 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.04 -5.34 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815199636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.500 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds