Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99883 * 2 1 4 4 N 1.46494 * 109.47139 * 124.99702 * 3 2 1 5 5 C 1.35064 * 125.57094 * 269.95677 * 4 3 2 6 6 O 1.21300 * 127.27853 * 0.02562 * 5 4 3 7 7 C 1.49972 * 105.43359 * 179.83685 * 5 4 3 8 8 O 1.21304 * 127.28588 * 180.25533 * 7 5 4 9 9 N 1.35061 * 105.43341 * 0.33217 * 7 5 4 10 10 C 1.46497 * 125.56544 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.47128 * 269.68864 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 O 1.42899 * 109.47007 * 65.00337 * 15 14 13 17 17 C 1.42908 * 114.00004 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46758 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00495 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99416 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00213 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99461 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47579 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47075 * 120.00304 * 22 20 18 25 25 H 1.48502 * 109.47221 * 239.99867 * 22 20 18 26 26 C 1.34274 * 108.86521 * 359.66363 * 9 7 5 27 27 O 1.21483 * 124.29817 * 180.24852 * 26 9 7 28 28 H 1.08001 * 119.99925 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00097 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00558 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47106 * 4.99625 * 3 2 1 32 32 H 1.08997 * 109.46761 * 244.99800 * 3 2 1 33 33 H 1.09004 * 109.47268 * 149.69004 * 10 9 7 34 34 H 1.08997 * 109.47471 * 29.69411 * 10 9 7 35 35 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 36 36 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 37 37 H 1.09001 * 109.47541 * 185.00107 * 15 14 13 38 38 H 1.09002 * 109.47459 * 305.00456 * 15 14 13 39 39 H 1.08995 * 109.46896 * 299.99942 * 17 16 15 40 40 H 1.09001 * 109.46731 * 60.00092 * 17 16 15 41 41 H 0.96998 * 119.99720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7134 1.7971 2.3681 6 8 1.6641 2.2657 2.7565 7 6 3.9723 1.6074 3.1607 8 8 4.1565 1.8890 4.3261 9 7 4.8584 1.0582 2.3019 10 6 6.2395 0.6895 2.6225 11 6 7.1490 1.8584 2.3440 12 8 6.6905 2.8934 1.9215 13 8 8.4685 1.7498 2.5652 14 6 9.2838 2.9154 2.2741 15 6 10.7488 2.6040 2.5867 16 8 11.2181 1.5841 1.7026 17 6 12.5831 1.2164 1.9118 18 6 12.9691 0.1394 0.9309 19 1 12.2448 -0.2273 0.2187 20 6 14.2475 -0.3771 0.9421 21 7 15.1297 0.0698 1.8090 22 14 14.7259 -1.7125 -0.2733 23 1 13.5610 -2.0383 -1.1348 24 1 15.8479 -1.2328 -1.1196 25 1 15.1493 -2.9277 0.4677 26 6 4.2645 0.8990 1.1082 27 8 4.8079 0.4233 0.1313 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 6.5407 -0.1595 2.0088 34 1 6.3081 0.4187 3.6761 35 1 9.1840 3.1746 1.2202 36 1 8.9520 3.7532 2.8873 37 1 11.3483 3.5045 2.4532 38 1 10.8352 2.2595 3.6172 39 1 13.2208 2.0880 1.7646 40 1 12.7070 0.8429 2.9283 41 1 16.0292 -0.2933 1.8165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815199636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -178.755933 kcal Electronic energy + Delta-G solvation = -28743.150737 eV Core-core repulsion = 24204.937756 eV Total energy + Delta-G solvation = -4538.212981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.67914 -41.68874 -40.58352 -40.17216 -38.79149 -37.84044 -37.64789 -37.01092 -34.94535 -34.77403 -32.06973 -30.87330 -29.03944 -27.90549 -26.84250 -24.64983 -24.27721 -23.37922 -23.18554 -22.11136 -21.02787 -19.55496 -19.24558 -18.68295 -18.52811 -18.44020 -18.07464 -17.86009 -17.60539 -17.13924 -16.88712 -16.63600 -16.38126 -16.21114 -16.02061 -15.77381 -15.53820 -15.15382 -14.70473 -14.55481 -14.26555 -14.08794 -13.78483 -13.52411 -13.32644 -13.23627 -12.89864 -12.72688 -12.53894 -12.48914 -12.36210 -12.26391 -11.98739 -11.81756 -11.59341 -11.39399 -11.25755 -11.15432 -10.89268 -10.50859 -10.26494 -8.31686 -6.43346 -1.01248 0.28118 0.60862 0.90796 1.11242 1.23405 1.41861 1.42563 1.44428 1.57450 1.67457 2.35281 2.56506 3.02503 3.04972 3.30986 3.35380 3.76612 3.80551 3.85554 3.89012 4.05896 4.07706 4.09362 4.18593 4.39011 4.49781 4.50281 4.58948 4.64739 4.86781 4.97285 5.18368 5.24429 5.25240 5.33168 5.55651 5.60684 5.66521 5.85027 5.96042 6.21270 6.43853 6.51621 6.80538 7.28183 8.80522 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002104 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.653201 B =13305.754227 C =14444.168309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.205 4.205 3 C 0.143 3.857 4 N -0.559 5.559 5 C 0.525 3.475 6 O -0.422 6.422 7 C 0.519 3.481 8 O -0.423 6.423 9 N -0.562 5.562 10 C 0.130 3.870 11 C 0.447 3.553 12 O -0.534 6.534 13 O -0.346 6.346 14 C 0.080 3.920 15 C 0.053 3.947 16 O -0.408 6.408 17 C 0.207 3.793 18 C -0.547 4.547 19 H 0.061 0.939 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.718 3.282 27 O -0.497 6.497 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.060 0.940 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.284 1.078 0.051 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.224 4.224 3 C 0.025 3.975 4 N -0.307 5.307 5 C 0.306 3.694 6 O -0.287 6.287 7 C 0.300 3.700 8 O -0.288 6.288 9 N -0.311 5.311 10 C 0.009 3.991 11 C 0.290 3.710 12 O -0.424 6.424 13 O -0.261 6.261 14 C 0.006 3.994 15 C -0.024 4.024 16 O -0.328 6.328 17 C 0.132 3.868 18 C -0.585 4.585 19 H 0.079 0.921 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.196 1.196 26 C 0.422 3.578 27 O -0.366 6.366 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.009 0.991 40 H 0.010 0.990 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.486 1.471 0.145 29.523 hybrid contribution 0.969 -0.051 -0.268 1.007 sum -28.517 1.420 -0.123 28.552 Atomic orbital electron populations 1.24222 0.95219 1.03784 0.94829 1.23084 0.96776 0.97733 1.04760 1.21227 0.91060 0.98655 0.86569 1.46816 1.12721 1.57207 1.13964 1.20549 0.88450 0.77780 0.82669 1.90848 1.26384 1.37641 1.73859 1.20981 0.85905 0.76651 0.86482 1.90866 1.80203 1.43624 1.14089 1.46273 1.13638 1.58995 1.12184 1.21472 0.73853 0.94205 1.09556 1.24327 0.82782 0.89986 0.73922 1.90672 1.76924 1.31807 1.42984 1.86559 1.18683 1.43135 1.77690 1.23245 0.87658 0.85898 1.02572 1.22651 0.92253 0.92756 0.94722 1.87861 1.29766 1.56858 1.58351 1.19883 0.77446 0.93986 0.95446 1.21409 0.97527 1.21172 1.18402 0.92123 1.25935 0.95607 0.99608 0.98078 1.70060 1.05374 1.44193 1.37183 0.85154 0.78319 0.77890 0.78160 1.18913 1.19800 1.19598 1.15886 0.81242 0.77807 0.82882 1.91072 1.67007 1.44835 1.33677 0.86524 0.86912 0.86854 0.85973 0.86325 0.81097 0.80247 0.90963 0.87248 0.90061 0.92142 0.99074 0.99022 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 14.32 67.78 0.97 -0.01 16 2 C -0.20 -1.94 9.85 25.65 0.25 -1.69 16 3 C 0.14 1.47 6.30 85.64 0.54 2.01 16 4 N -0.56 -8.61 2.64 -778.33 -2.06 -10.67 16 5 C 0.52 9.32 8.31 87.38 0.73 10.05 16 6 O -0.42 -8.81 17.88 -3.09 -0.06 -8.87 16 7 C 0.52 10.00 8.31 87.38 0.73 10.73 16 8 O -0.42 -9.88 17.88 -3.10 -0.06 -9.94 16 9 N -0.56 -10.19 2.15 -778.33 -1.67 -11.86 16 10 C 0.13 2.12 6.45 85.63 0.55 2.68 16 11 C 0.45 11.36 8.03 71.24 0.57 11.93 16 12 O -0.53 -16.17 16.18 21.98 0.36 -15.81 16 13 O -0.35 -10.09 10.19 -48.81 -0.50 -10.59 16 14 C 0.08 2.31 5.84 71.98 0.42 2.73 16 15 C 0.05 1.82 6.33 71.98 0.46 2.28 16 16 O -0.41 -19.36 10.30 -145.57 -1.50 -20.86 16 17 C 0.21 11.33 5.69 71.24 0.41 11.74 16 18 C -0.55 -32.16 9.43 25.60 0.24 -31.92 16 19 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 20 C 0.01 0.36 5.46 84.66 0.46 0.82 16 21 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 22 Si 0.98 43.83 29.54 68.60 2.03 45.85 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.72 13.60 8.32 179.37 1.49 15.09 16 27 O -0.50 -11.77 17.27 -3.66 -0.06 -11.84 16 28 H 0.12 0.57 8.06 -2.91 -0.02 0.54 16 29 H 0.11 0.55 7.84 -2.91 -0.02 0.53 16 30 H 0.11 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.12 0.87 7.75 -2.39 -0.02 0.85 16 32 H 0.12 1.11 7.98 -2.39 -0.02 1.10 16 33 H 0.17 2.17 7.98 -2.38 -0.02 2.15 16 34 H 0.18 1.78 8.09 -2.39 -0.02 1.76 16 35 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 36 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -77.18 381.98 5.65 -71.53 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.07 Total: 1.19 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 7.82 Total: 36.44 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -3.44 Total: -77.11 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: -1.81 Total: -77.90 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.18 5.65 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815199636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.228 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds