Wall clock time and date at job start Sat Apr 11 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9 13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9 14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10 15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11 16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13 17 17 H 1.08996 * 110.03379 * 119.28795 * 16 15 14 18 18 N 1.46504 * 110.03394 * 240.71488 * 16 15 14 19 19 C 1.34775 * 119.99895 * 272.16973 * 18 16 15 20 20 O 1.21550 * 120.00131 * 359.97438 * 19 18 16 21 21 C 1.47858 * 119.99847 * 179.97438 * 19 18 16 22 22 C 1.39569 * 120.12318 * 359.72275 * 21 19 18 23 23 C 1.38183 * 119.84600 * 179.72288 * 22 21 19 24 24 F 1.35105 * 119.94604 * 180.29167 * 23 22 21 25 25 C 1.38568 * 120.10994 * 0.58070 * 23 22 21 26 26 C 1.38406 * 120.25405 * 359.68820 * 25 23 22 27 27 Cl 1.73599 * 119.92954 * 180.02562 * 26 25 23 28 28 C 1.38109 * 120.14888 * 0.02562 * 26 25 23 29 29 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 32 32 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 33 33 H 1.09004 * 110.75596 * 274.93646 * 13 11 10 34 34 H 1.08992 * 110.75389 * 38.30384 * 13 11 10 35 35 H 1.09000 * 110.48214 * 203.38065 * 14 13 11 36 36 H 1.09000 * 110.48593 * 80.74090 * 14 13 11 37 37 H 1.09001 * 110.02914 * 264.32888 * 15 14 13 38 38 H 1.08992 * 110.03108 * 142.89691 * 15 14 13 39 39 H 0.97003 * 119.99806 * 92.16440 * 18 16 15 40 40 H 1.08000 * 120.08036 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.87116 * 179.72216 * 25 23 22 42 42 H 1.07999 * 120.05930 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3428 -4.7047 0.8096 13 6 0.3385 -4.9124 -1.3658 14 6 -0.1121 -6.3936 -1.4136 15 6 1.0592 -7.1663 -0.7729 16 6 1.8067 -6.1657 0.1259 17 1 1.7880 -6.5072 1.1608 18 7 3.1913 -6.0190 -0.3298 19 6 4.1443 -6.8533 0.1308 20 8 3.8551 -7.7273 0.9245 21 6 5.5416 -6.7055 -0.3296 22 6 5.8755 -5.7066 -1.2453 23 6 7.1842 -5.5700 -1.6673 24 9 7.5107 -4.6000 -2.5492 25 6 8.1612 -6.4300 -1.1920 26 6 7.8339 -7.4257 -0.2880 27 17 9.0648 -8.4981 0.3025 28 6 6.5303 -7.5681 0.1453 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6845 -3.7147 -0.8894 32 1 2.6845 -3.7147 0.8905 33 1 -0.5232 -4.2454 -1.3918 34 1 1.0247 -4.6908 -2.1831 35 1 -0.2616 -6.7137 -2.4448 36 1 -1.0243 -6.5337 -0.8336 37 1 1.7266 -7.5427 -1.5481 38 1 0.6778 -7.9933 -0.1741 39 1 3.4221 -5.3213 -0.9630 40 1 5.1137 -5.0388 -1.6196 41 1 9.1820 -6.3226 -1.5278 42 1 6.2767 -8.3453 0.8510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753893047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:44 Heat of formation + Delta-G solvation = -57.319312 kcal Electronic energy + Delta-G solvation = -26841.402541 eV Core-core repulsion = 22761.537401 eV Total energy + Delta-G solvation = -4079.865140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.29864 -40.65770 -39.15776 -37.84782 -36.83784 -34.46509 -33.78490 -31.63082 -31.47507 -30.85888 -28.65688 -27.74575 -24.81027 -24.35873 -23.14323 -22.38301 -21.14766 -20.38627 -19.37772 -18.77171 -17.28325 -17.15340 -16.68934 -16.40663 -16.06862 -15.83511 -15.23598 -15.15155 -14.90722 -14.62325 -14.47641 -13.84617 -13.79786 -13.67401 -13.49675 -13.12240 -12.89567 -12.46537 -12.39876 -12.18224 -11.78648 -11.57949 -11.51260 -11.31244 -10.93431 -10.89930 -10.84052 -10.55503 -10.42505 -10.38782 -10.12922 -10.04958 -9.73080 -9.53286 -9.20374 -9.07140 -8.91780 -6.98099 -5.81173 -3.10260 0.18246 0.53486 1.52255 2.39586 2.98430 3.29327 3.41288 3.46082 3.46702 3.70033 4.18346 4.39599 4.48672 4.51075 4.57829 4.66199 4.75460 4.90273 5.01057 5.21676 5.38915 5.40902 5.48266 5.55088 5.59088 5.60789 5.66682 5.71392 5.79212 5.86087 5.99999 6.02136 6.14549 6.16344 6.22083 6.42746 6.48209 6.52925 6.67695 6.73766 7.38889 7.64294 8.03912 8.37444 9.48996 10.05617 10.40379 11.41429 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003187 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.726652 B = 8783.364796 C =10831.829953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.164 3.836 11 C -0.108 4.108 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.147 3.853 17 H 0.092 0.908 18 N -0.708 5.708 19 C 0.559 3.441 20 O -0.532 6.532 21 C -0.088 4.088 22 C -0.116 4.116 23 C 0.113 3.887 24 F -0.125 7.125 25 C -0.126 4.126 26 C -0.017 4.017 27 Cl -0.050 7.050 28 C -0.063 4.063 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.012 0.988 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.405 0.595 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 -18.164 -3.847 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.036 3.964 11 C -0.127 4.127 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.111 0.889 18 N -0.361 5.361 19 C 0.345 3.655 20 O -0.410 6.410 21 C -0.091 4.091 22 C -0.136 4.136 23 C 0.093 3.907 24 F -0.104 7.104 25 C -0.146 4.146 26 C -0.044 4.044 27 Cl -0.021 7.021 28 C -0.083 4.083 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.243 0.757 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.142 -18.702 -3.260 22.535 hybrid contribution 0.536 1.496 -0.455 1.653 sum 12.678 -17.206 -3.714 21.693 Atomic orbital electron populations 1.69643 1.05110 1.25846 1.57432 1.24731 0.95511 0.97690 1.02808 0.86281 0.78563 0.83533 0.77888 1.21227 1.21650 1.21238 1.19156 0.90953 0.84170 1.43156 0.91318 1.42312 1.05869 0.99732 1.89346 1.20580 0.93071 0.85513 0.97258 1.22500 0.98116 0.93082 0.98999 0.89155 1.22519 1.00594 0.95367 0.96597 1.22393 0.97760 0.95819 1.00344 1.22575 0.97469 0.97977 0.98977 1.21711 0.79250 0.95751 0.99014 0.88942 1.46213 1.08595 1.34384 1.46862 1.17952 0.84331 0.81961 0.81225 1.90785 1.82275 1.33869 1.34071 1.19757 0.94471 0.96588 0.98293 1.21515 0.95836 0.98728 0.97482 1.17236 0.92835 0.88668 0.91953 1.91586 1.93122 1.60052 1.65610 1.21166 1.00797 0.94627 0.97963 1.20454 0.90396 0.94751 0.98780 1.98403 1.53184 1.63334 1.87151 1.21207 0.89601 0.98856 0.98631 0.93410 0.78144 0.97055 0.96178 0.90683 0.91471 0.91844 0.91541 0.91502 0.91269 0.75693 0.83298 0.83107 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.52 5.49 -59.90 -0.33 -17.85 16 10 C 0.16 3.02 4.73 -4.04 -0.02 3.00 16 11 C -0.11 -1.60 2.84 -88.96 -0.25 -1.85 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.56 6.19 -24.74 -0.15 -1.71 16 14 C -0.13 -1.41 6.83 -25.07 -0.17 -1.58 16 15 C -0.13 -1.50 6.59 -25.61 -0.17 -1.67 16 16 C 0.15 1.91 3.12 -66.81 -0.21 1.70 16 17 H 0.09 1.29 7.56 -51.93 -0.39 0.90 16 18 N -0.71 -8.72 4.29 -53.66 -0.23 -8.95 16 19 C 0.56 7.26 7.77 -12.32 -0.10 7.16 16 20 O -0.53 -8.33 16.00 5.32 0.09 -8.25 16 21 C -0.09 -0.96 5.87 -104.98 -0.62 -1.57 16 22 C -0.12 -1.16 9.52 -39.11 -0.37 -1.53 16 23 C 0.11 1.10 7.29 -39.48 -0.29 0.82 16 24 F -0.13 -1.35 17.26 2.25 0.04 -1.31 16 25 C -0.13 -1.08 9.80 -39.40 -0.39 -1.47 16 26 C -0.02 -0.15 6.31 -39.57 -0.25 -0.40 16 27 Cl -0.05 -0.41 28.95 -51.86 -1.50 -1.91 16 28 C -0.06 -0.64 9.37 -39.14 -0.37 -1.01 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.38 9.76 7.64 -40.82 -0.31 9.45 16 31 H 0.01 0.21 6.41 -51.93 -0.33 -0.13 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.64 4.59 -40.82 -0.19 4.45 16 40 H 0.15 1.35 6.40 -52.49 -0.34 1.02 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.15 1.54 7.65 -52.49 -0.40 1.14 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -30.63 366.84 -9.59 -40.22 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.29 Total: 9.61 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.59 Total: -7.26 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.17 Total: -53.65 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.63 -9.59 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.099 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds