Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.38264 * 119.97591 * 90.00268 * 7 6 4 9 9 C 1.38214 * 120.06293 * 179.97438 * 8 7 6 10 10 C 1.38321 * 120.01318 * 0.02562 * 9 8 7 11 11 Cl 1.73597 * 120.02733 * 180.02562 * 10 9 8 12 12 C 1.38550 * 119.94898 * 359.97438 * 10 9 8 13 13 F 1.35107 * 120.03065 * 180.02562 * 12 10 9 14 14 C 1.38201 * 119.97731 * 269.72874 * 7 6 4 15 15 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 16 16 C 1.54325 * 102.94184 * 206.42607 * 15 2 1 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 2 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 28 28 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 29 29 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 30 30 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 31 31 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 32 32 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 33 33 H 1.07996 * 119.96883 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.99288 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.00429 * 0.02562 * 14 7 6 36 36 H 1.09000 * 110.72140 * 88.06437 * 15 2 1 37 37 H 1.08998 * 110.72520 * 324.78756 * 15 2 1 38 38 H 1.09002 * 109.88274 * 262.77538 * 16 15 2 39 39 H 1.09000 * 110.01178 * 141.68100 * 16 15 2 40 40 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 42 42 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.3350 4.3792 3.3571 9 6 1.8228 5.0687 4.4399 10 6 0.6370 5.7699 4.3156 11 17 -0.0064 6.6366 5.6753 12 6 -0.0364 5.7809 3.1048 13 9 -1.1946 6.4657 2.9815 14 6 0.4814 5.0942 2.0200 15 6 2.0861 -0.8079 -1.2023 16 6 3.4674 -1.2742 -0.6961 17 7 3.4270 -1.2431 0.7733 18 6 4.4640 -1.5668 1.6072 19 1 4.3332 -1.5120 2.6778 20 6 5.6830 -1.9654 1.0763 21 7 5.8425 -2.0318 -0.2285 22 14 7.0977 -2.4063 2.2138 23 1 8.2800 -2.7972 1.4048 24 1 7.4398 -1.2322 3.0562 25 1 6.6975 -3.5406 3.0847 26 6 2.0835 -0.8120 1.2003 27 1 -0.3634 -1.0252 0.0699 28 1 -0.3633 0.5732 0.8529 29 1 -0.3634 0.4521 -0.9229 30 1 2.6639 1.6542 -0.6973 31 1 3.3113 3.6109 1.0392 32 1 1.9317 4.1389 0.0462 33 1 3.2607 3.8317 3.4551 34 1 2.3485 5.0600 5.3833 35 1 -0.0406 5.1054 1.0745 36 1 2.1922 -0.1699 -2.0797 37 1 1.4467 -1.6632 -1.4210 38 1 4.2426 -0.5999 -1.0600 39 1 3.6676 -2.2890 -1.0400 40 1 6.6945 -2.3100 -0.5994 41 1 1.4523 -1.6782 1.3988 42 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754680519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -37.210071 kcal Electronic energy + Delta-G solvation = -27207.291093 eV Core-core repulsion = 23128.297955 eV Total energy + Delta-G solvation = -4078.993138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.12350 -40.22199 -39.14859 -37.34333 -36.71408 -33.94787 -32.94105 -31.82225 -30.90786 -30.06292 -28.72999 -27.58872 -25.68204 -23.74880 -23.23936 -22.46396 -20.73599 -20.11386 -19.06746 -17.74821 -17.16238 -16.93179 -16.65139 -16.54054 -15.88948 -15.56389 -14.96457 -14.68728 -14.39658 -14.10821 -13.84548 -13.71210 -13.53466 -13.34114 -13.06405 -12.82346 -12.55500 -12.16331 -11.98457 -11.92981 -11.72465 -11.62402 -11.60890 -11.55607 -11.13893 -10.92401 -10.89046 -10.41332 -10.37757 -10.13702 -10.03326 -9.68705 -9.37248 -9.15295 -8.76508 -8.69252 -8.55048 -6.83069 -5.73635 -3.05751 0.72538 0.89834 1.79000 2.88449 3.10710 3.38464 3.43385 3.44201 3.59332 3.85152 4.31275 4.46540 4.48282 4.83726 4.91893 4.94531 5.10339 5.20865 5.27386 5.37069 5.44557 5.48394 5.59322 5.61311 5.70510 5.73849 5.83878 6.00655 6.11721 6.14546 6.19416 6.34443 6.38020 6.47998 6.51856 6.66438 6.77376 7.09881 7.51446 7.53505 7.77007 7.86521 8.23533 8.52996 9.20818 9.80906 10.46985 11.38231 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002864 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.035014 B = 9772.917817 C =11088.276873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.700 5.700 4 C 0.518 3.482 5 O -0.533 6.533 6 C -0.109 4.109 7 C -0.023 4.023 8 C -0.100 4.100 9 C -0.080 4.080 10 C -0.077 4.077 11 Cl -0.057 7.057 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.129 4.129 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.134 3.866 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.399 0.601 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 16.079 1.007 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 N -0.350 5.350 4 C 0.303 3.697 5 O -0.410 6.410 6 C -0.149 4.149 7 C -0.023 4.023 8 C -0.118 4.118 9 C -0.099 4.099 10 C -0.104 4.104 11 Cl -0.028 7.028 12 C 0.088 3.912 13 F -0.108 7.108 14 C -0.148 4.148 15 C -0.186 4.186 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.212 1.212 26 C 0.007 3.993 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.233 0.767 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.882 15.829 1.724 18.740 hybrid contribution 0.904 -0.039 0.283 0.948 sum -8.979 15.790 2.007 18.275 Atomic orbital electron populations 1.22039 0.94287 1.02399 1.02426 1.21503 0.92624 0.80763 0.98034 1.45784 1.48546 1.11805 1.28869 1.20161 0.81420 0.86414 0.81709 1.90676 1.35596 1.78376 1.36396 1.20761 1.03054 0.93428 0.97635 1.19234 0.93513 0.94664 0.94924 1.21123 1.00929 0.98302 0.91473 1.20942 0.93359 0.95450 1.00107 1.20967 0.97857 1.02917 0.88688 1.98377 1.86203 1.75124 1.43131 1.17295 0.84008 0.96465 0.93382 1.91530 1.45641 1.77236 1.96404 1.20926 0.96864 0.98678 0.98352 1.23228 1.00475 0.98937 0.95932 1.21153 0.89971 0.99949 0.83688 1.44441 1.07632 1.79082 1.01787 1.19010 0.89365 1.37821 0.88959 0.90674 1.24758 0.97759 1.01949 0.95998 1.69937 1.24228 1.53932 1.09175 0.86218 0.81863 0.78319 0.79490 1.21636 1.21253 1.21212 1.21902 0.87563 0.94834 0.95008 0.91994 0.90325 0.93304 0.76676 0.87083 0.87694 0.84117 0.83896 0.83988 0.91755 0.90931 0.93647 0.93872 0.93798 0.95771 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.59 37.16 0.32 -1.95 16 2 C 0.16 2.63 0.82 -129.55 -0.11 2.53 16 3 N -0.70 -10.22 5.19 -45.52 -0.24 -10.46 16 4 C 0.52 7.42 7.21 -10.98 -0.08 7.34 16 5 O -0.53 -9.45 12.87 5.56 0.07 -9.38 16 6 C -0.11 -1.10 5.83 -29.04 -0.17 -1.27 16 7 C -0.02 -0.25 4.37 -104.63 -0.46 -0.71 16 8 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 9 C -0.08 -0.84 9.83 -39.56 -0.39 -1.23 16 10 C -0.08 -0.88 6.33 -39.44 -0.25 -1.13 16 11 Cl -0.06 -0.62 28.62 -51.86 -1.48 -2.11 16 12 C 0.11 1.29 7.28 -39.39 -0.29 1.01 16 13 F -0.13 -1.61 16.84 2.25 0.04 -1.57 16 14 C -0.13 -1.42 9.68 -39.52 -0.38 -1.80 16 15 C -0.15 -2.49 5.97 -24.90 -0.15 -2.64 16 16 C 0.18 4.02 5.37 -3.06 -0.02 4.01 16 17 N -0.60 -14.91 3.39 -169.93 -0.58 -15.49 16 18 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.28 10.31 55.49 0.57 -25.71 16 22 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.13 2.83 6.18 -2.41 -0.01 2.82 16 27 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.08 1.29 5.92 -51.93 -0.31 0.98 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 5.06 8.51 -40.82 -0.35 4.71 16 31 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 38 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 39 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.02 0.53 7.99 -51.93 -0.41 0.11 16 42 H 0.05 1.12 6.89 -51.93 -0.36 0.77 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -31.81 364.00 -9.30 -41.11 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.53 Total: 2.45 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.62 Total: -1.12 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.24 Total: -51.65 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -9.30 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754680519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.898 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds