Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.38264 * 119.97591 * 90.00268 * 7 6 4 9 9 C 1.38214 * 120.06293 * 179.97438 * 8 7 6 10 10 C 1.38321 * 120.01318 * 0.02562 * 9 8 7 11 11 Cl 1.73597 * 120.02733 * 180.02562 * 10 9 8 12 12 C 1.38550 * 119.94898 * 359.97438 * 10 9 8 13 13 F 1.35107 * 120.03065 * 180.02562 * 12 10 9 14 14 C 1.38201 * 119.97731 * 269.72874 * 7 6 4 15 15 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 16 16 C 1.54325 * 102.94184 * 206.42607 * 15 2 1 17 17 N 1.47022 * 107.26948 * 22.19107 * 16 15 2 18 18 C 1.36945 * 125.64832 * 181.02381 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47423 * 108.70390 * 1.29074 * 17 16 15 27 27 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 28 28 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 29 29 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 30 30 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 31 31 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 32 32 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 33 33 H 1.07996 * 119.96883 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.99288 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.00429 * 0.02562 * 14 7 6 36 36 H 1.09000 * 110.72140 * 88.06437 * 15 2 1 37 37 H 1.08998 * 110.72520 * 324.78756 * 15 2 1 38 38 H 1.09002 * 109.88274 * 262.77538 * 16 15 2 39 39 H 1.09000 * 110.01178 * 141.68100 * 16 15 2 40 40 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.37068 * 94.48354 * 26 17 16 42 42 H 1.09005 * 110.36651 * 216.80519 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.3350 4.3792 3.3571 9 6 1.8228 5.0687 4.4399 10 6 0.6370 5.7699 4.3156 11 17 -0.0064 6.6366 5.6753 12 6 -0.0364 5.7809 3.1048 13 9 -1.1946 6.4657 2.9815 14 6 0.4814 5.0942 2.0200 15 6 2.0861 -0.8079 -1.2023 16 6 3.4674 -1.2742 -0.6961 17 7 3.4270 -1.2431 0.7733 18 6 4.4640 -1.5668 1.6072 19 1 4.3332 -1.5120 2.6778 20 6 5.6830 -1.9654 1.0763 21 7 5.8425 -2.0318 -0.2285 22 14 7.0977 -2.4063 2.2138 23 1 8.2800 -2.7972 1.4048 24 1 7.4398 -1.2322 3.0562 25 1 6.6975 -3.5406 3.0847 26 6 2.0835 -0.8120 1.2003 27 1 -0.3634 -1.0252 0.0699 28 1 -0.3633 0.5732 0.8529 29 1 -0.3634 0.4521 -0.9229 30 1 2.6639 1.6542 -0.6973 31 1 3.3113 3.6109 1.0392 32 1 1.9317 4.1389 0.0462 33 1 3.2607 3.8317 3.4551 34 1 2.3485 5.0600 5.3833 35 1 -0.0406 5.1054 1.0745 36 1 2.1922 -0.1699 -2.0797 37 1 1.4467 -1.6632 -1.4210 38 1 4.2426 -0.5999 -1.0600 39 1 3.6676 -2.2890 -1.0400 40 1 6.6945 -2.3100 -0.5994 41 1 1.4523 -1.6782 1.3988 42 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754680519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -55.701542 kcal Electronic energy + Delta-G solvation = -27208.092943 eV Core-core repulsion = 23128.297955 eV Total energy + Delta-G solvation = -4079.794988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.03021 -41.34622 -40.16669 -38.73352 -37.61024 -35.59761 -33.97006 -33.34194 -31.79835 -31.57434 -30.33084 -28.49083 -27.48028 -25.40737 -24.08210 -23.47501 -22.19615 -21.54667 -20.38149 -18.99951 -18.53094 -17.87266 -17.79242 -17.46952 -17.02456 -16.80473 -16.61743 -16.07076 -15.61236 -15.51686 -15.02632 -14.79627 -14.70756 -14.50163 -14.11348 -13.97571 -13.83219 -13.56523 -13.43583 -13.25643 -13.10100 -12.80347 -12.72858 -12.62052 -12.47805 -12.39572 -12.08920 -12.02627 -11.97045 -11.93163 -11.66201 -11.51698 -10.68810 -10.55843 -10.00442 -9.90307 -9.64453 -8.84057 -7.83683 -5.17301 -0.13391 0.06940 0.93642 1.46185 1.48251 1.54709 1.79073 2.16982 2.50164 2.59145 3.00097 3.34680 3.49733 3.61564 3.66960 3.73753 4.02654 4.06290 4.09817 4.15083 4.23278 4.42385 4.50526 4.66813 4.70372 4.73637 4.79244 4.89272 4.90022 4.92956 4.95916 5.02107 5.06073 5.12513 5.37408 5.41239 5.45322 5.65912 5.68352 5.75358 5.83002 6.22278 6.75249 7.13942 7.43093 7.79941 8.44156 9.25770 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002864 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.035014 B = 9772.917817 C =11088.276873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.699 5.699 4 C 0.514 3.486 5 O -0.570 6.570 6 C -0.099 4.099 7 C -0.031 4.031 8 C -0.108 4.108 9 C -0.082 4.082 10 C -0.087 4.087 11 Cl -0.057 7.057 12 C 0.091 3.909 13 F -0.136 7.136 14 C -0.129 4.129 15 C -0.129 4.129 16 C 0.185 3.815 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.057 4.057 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.291 1.291 24 H -0.277 1.277 25 H -0.283 1.283 26 C 0.131 3.869 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.410 0.590 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.004 0.996 40 H 0.247 0.753 41 H 0.018 0.982 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 17.143 0.190 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.082 3.918 3 N -0.350 5.350 4 C 0.301 3.699 5 O -0.449 6.449 6 C -0.138 4.138 7 C -0.031 4.031 8 C -0.126 4.126 9 C -0.100 4.100 10 C -0.114 4.114 11 Cl -0.028 7.028 12 C 0.071 3.929 13 F -0.115 7.115 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.060 3.940 17 N -0.346 5.346 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.594 5.594 22 Si 0.800 3.200 23 H -0.217 1.217 24 H -0.203 1.203 25 H -0.210 1.210 26 C 0.005 3.995 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.246 0.754 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.163 16.919 0.900 19.757 hybrid contribution 0.978 -0.399 0.603 1.216 sum -9.185 16.520 1.503 18.961 Atomic orbital electron populations 1.21949 0.92281 1.02782 1.03152 1.21286 0.93851 0.81407 0.95219 1.45768 1.48808 1.10892 1.29539 1.20868 0.80585 0.87756 0.80660 1.90669 1.37278 1.79356 1.37635 1.20780 1.03581 0.90531 0.98957 1.19397 0.93635 0.94790 0.95318 1.21346 1.01320 0.98263 0.91711 1.21154 0.93104 0.94943 1.00842 1.21135 0.98268 1.03251 0.88773 1.98373 1.86240 1.75122 1.43033 1.17521 0.84150 0.97159 0.94024 1.91509 1.46019 1.77477 1.96470 1.21139 0.96777 0.98016 0.98806 1.23094 0.96774 0.99979 0.96932 1.20946 0.92966 0.97371 0.82693 1.44679 1.08318 1.78984 1.02597 1.19278 0.90591 1.37894 0.89317 0.91310 1.25486 0.99914 1.02243 0.97410 1.70135 1.24316 1.54511 1.10444 0.85259 0.78797 0.78134 0.77775 1.21719 1.20329 1.20991 1.22004 0.86187 0.94909 0.96423 0.91540 0.91815 0.90582 0.75351 0.85661 0.84040 0.83452 0.82247 0.82216 0.88253 0.89638 0.95994 0.97726 0.94334 0.96448 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.59 71.98 0.62 -3.28 16 2 C 0.17 5.38 0.82 5.07 0.00 5.38 16 3 N -0.70 -18.84 5.19 -416.31 -2.16 -21.00 16 4 C 0.51 13.72 7.21 87.66 0.63 14.35 16 5 O -0.57 -19.63 12.87 -3.02 -0.04 -19.66 16 6 C -0.10 -1.71 5.83 29.10 0.17 -1.54 16 7 C -0.03 -0.62 4.37 -19.87 -0.09 -0.70 16 8 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 9 C -0.08 -1.64 9.83 22.28 0.22 -1.42 16 10 C -0.09 -1.93 6.33 22.36 0.14 -1.79 16 11 Cl -0.06 -1.20 28.62 -2.72 -0.08 -1.27 16 12 C 0.09 2.09 7.28 22.39 0.16 2.26 16 13 F -0.14 -3.28 16.84 44.97 0.76 -2.52 16 14 C -0.13 -2.59 9.68 22.31 0.22 -2.37 16 15 C -0.13 -4.10 5.97 31.78 0.19 -3.91 16 16 C 0.19 8.44 5.37 86.73 0.47 8.90 16 17 N -0.62 -31.05 3.39 -691.55 -2.35 -33.40 16 18 C -0.24 -13.51 10.28 84.03 0.86 -12.64 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 21 N -0.95 -54.58 10.31 21.65 0.22 -54.36 16 22 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.13 5.56 6.18 86.93 0.54 6.10 16 27 H 0.07 1.73 8.07 -2.39 -0.02 1.72 16 28 H 0.06 1.98 5.92 -2.39 -0.01 1.96 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.41 9.22 8.51 -92.71 -0.79 8.43 16 31 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.14 1.42 8.08 -2.39 -0.02 1.40 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.10 2.50 8.09 -2.39 -0.02 2.48 16 37 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 38 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 39 H 0.00 0.24 7.50 -2.39 -0.02 0.22 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 41 H 0.02 0.77 7.99 -2.39 -0.02 0.75 16 42 H 0.03 1.32 6.89 -2.38 -0.02 1.31 16 Total: -1.00 -70.61 364.00 3.47 -67.15 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.27 Total: 13.33 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.81 Total: 4.63 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.28 Total: -108.75 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.27 kcal Total: -70.61 3.47 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754680519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.444 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds