Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 110.29242 * 2 1 4 4 N 1.46493 * 109.46948 * 60.67870 * 3 2 1 5 5 C 1.36942 * 119.99880 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.38805 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99942 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00158 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47023 * 90.00249 * 9 7 5 11 11 H 1.48502 * 109.47680 * 209.99888 * 9 7 5 12 12 H 1.48502 * 109.47296 * 330.00300 * 9 7 5 13 13 C 1.54610 * 110.41601 * 237.80354 * 2 1 3 14 14 C 1.54597 * 102.91317 * 262.76445 * 13 2 1 15 15 N 1.48109 * 103.42226 * 322.86375 * 14 13 2 16 16 C 1.34779 * 127.03629 * 219.28805 * 15 14 13 17 17 O 1.21563 * 119.99608 * 355.07189 * 16 15 14 18 18 C 1.47773 * 120.00223 * 175.34791 * 16 15 14 19 19 C 1.39645 * 120.14169 * 39.62202 * 18 16 15 20 20 C 1.37892 * 119.91349 * 180.02562 * 19 18 16 21 21 C 1.38397 * 120.21023 * 0.02562 * 20 19 18 22 22 C 1.38467 * 120.29094 * 359.96283 * 21 20 19 23 23 F 1.35104 * 119.96294 * 180.02562 * 22 21 20 24 24 C 1.38385 * 120.07767 * 359.76130 * 22 21 20 25 25 Cl 1.73606 * 120.10227 * 180.25828 * 24 22 21 26 26 C 1.47486 * 105.93164 * 39.02405 * 15 14 13 27 27 H 1.09002 * 109.46531 * 299.32318 * 1 2 3 28 28 H 1.08994 * 109.46967 * 59.31817 * 1 2 3 29 29 H 1.08993 * 109.46811 * 179.32217 * 1 2 3 30 30 H 1.08994 * 109.47134 * 180.68107 * 3 2 1 31 31 H 1.09002 * 109.46401 * 300.68335 * 3 2 1 32 32 H 0.97003 * 120.00715 * 0.02562 * 4 3 2 33 33 H 0.97005 * 120.00127 * 180.02562 * 8 7 5 34 34 H 1.09005 * 110.73898 * 21.24895 * 13 2 1 35 35 H 1.08997 * 110.74392 * 144.57230 * 13 2 1 36 36 H 1.08999 * 110.61787 * 204.34725 * 14 13 2 37 37 H 1.09000 * 110.54684 * 81.34950 * 14 13 2 38 38 H 1.07998 * 120.04511 * 359.97136 * 19 18 16 39 39 H 1.07999 * 119.89648 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.85913 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.91296 * 94.14064 * 26 15 14 42 42 H 1.09002 * 109.91489 * 215.22003 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4351 0.0000 4 7 1.5956 2.1277 1.2042 5 6 1.9472 3.4331 1.4221 6 1 2.5670 3.9522 0.7060 7 6 1.5070 4.0892 2.5634 8 7 1.8445 5.3441 2.7726 9 14 0.4345 3.1917 3.8017 10 1 1.2956 2.5305 4.8150 11 1 -0.4644 4.1636 4.4745 12 1 -0.3803 2.1673 3.1003 13 6 2.0694 -0.7721 -1.2262 14 6 2.3677 -2.1743 -0.6476 15 7 2.8825 -1.8835 0.7103 16 6 3.8947 -2.5068 1.3455 17 8 4.4304 -3.4713 0.8350 18 6 4.3494 -2.0215 2.6651 19 6 3.4188 -1.5856 3.6107 20 6 3.8482 -1.1332 4.8404 21 6 5.1990 -1.1092 5.1407 22 6 6.1292 -1.5396 4.2096 23 9 7.4462 -1.5138 4.5099 24 6 5.7111 -2.0014 2.9739 25 17 6.8763 -2.5475 1.8086 26 6 2.0650 -0.7681 1.2229 27 1 -0.3632 0.5033 0.8960 28 1 -0.3633 0.5244 -0.8838 29 1 -0.3633 -1.0275 -0.0122 30 1 3.1504 1.4195 -0.0122 31 1 1.6948 1.9577 -0.8838 32 1 1.0387 1.6616 1.8473 33 1 1.5372 5.8025 3.5703 34 1 1.3136 -0.8288 -2.0096 35 1 2.9824 -0.3104 -1.6020 36 1 3.1244 -2.6829 -1.2450 37 1 1.4553 -2.7682 -0.5942 38 1 2.3641 -1.6020 3.3788 39 1 3.1283 -0.7958 5.5713 40 1 5.5292 -0.7533 6.1054 41 1 1.2331 -1.1568 1.8103 42 1 2.6786 -0.1105 1.8387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754708916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -33.744008 kcal Electronic energy + Delta-G solvation = -27994.526291 eV Core-core repulsion = 23915.683453 eV Total energy + Delta-G solvation = -4078.842838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.15716 -40.69087 -39.06976 -37.87001 -36.62507 -34.97296 -32.93362 -31.78667 -30.94734 -30.61698 -29.29283 -26.69510 -26.12999 -24.62472 -23.06058 -23.00325 -21.69150 -20.02609 -19.22466 -18.13425 -17.64432 -16.92725 -16.88206 -16.39019 -15.92970 -15.86126 -15.40694 -14.69307 -14.60750 -14.46700 -14.21039 -13.89054 -13.53014 -13.43131 -13.07163 -12.97810 -12.87639 -12.41672 -12.30870 -12.20839 -12.03846 -11.92834 -11.76353 -11.65660 -11.42360 -11.13483 -11.02431 -10.79733 -10.55383 -10.40117 -10.17581 -9.93233 -9.63767 -9.27946 -8.99117 -8.94784 -8.75716 -7.31159 -5.83076 -3.19248 0.43470 0.71070 1.84428 2.49507 2.73284 3.26264 3.26615 3.27329 3.36683 3.81133 4.15718 4.44869 4.48397 4.50535 4.51435 4.71849 4.82721 4.84536 5.08808 5.15444 5.22569 5.38065 5.42174 5.49203 5.53702 5.57520 5.61374 5.68583 5.71689 5.72957 5.75064 5.91573 5.95143 6.10072 6.16052 6.21454 6.32993 6.38739 6.57191 6.63264 7.37276 7.92538 7.97595 8.35294 9.13683 9.85377 10.04738 11.35439 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009894 B = 0.004831 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.386556 B = 5794.982138 C = 7543.387681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C 0.171 3.829 4 N -0.753 5.753 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.879 3.121 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.123 4.123 14 C 0.109 3.891 15 N -0.610 5.610 16 C 0.579 3.421 17 O -0.520 6.520 18 C -0.092 4.092 19 C -0.087 4.087 20 C -0.087 4.087 21 C -0.119 4.119 22 C 0.103 3.897 23 F -0.124 7.124 24 C -0.031 4.031 25 Cl -0.026 7.026 26 C 0.098 3.902 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.360 0.640 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -17.245 0.135 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C 0.043 3.957 4 N -0.400 5.400 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.162 4.162 14 C -0.013 4.013 15 N -0.343 5.343 16 C 0.367 3.633 17 O -0.396 6.396 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.138 4.138 22 C 0.083 3.917 23 F -0.102 7.102 24 C -0.060 4.060 25 Cl 0.004 6.996 26 C -0.025 4.025 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.087 0.913 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.162 -17.637 -0.230 17.771 hybrid contribution -0.503 -0.294 1.043 1.194 sum 1.659 -17.931 0.813 18.026 Atomic orbital electron populations 1.21833 0.93202 1.00951 1.03186 1.21736 0.96453 0.96588 0.93688 1.20700 0.96543 0.87833 0.90597 1.42720 1.62211 1.12071 1.22951 1.19044 1.26499 0.86403 1.05377 0.89230 1.24657 1.00405 0.95817 0.98106 1.69695 1.49821 1.10005 1.28527 0.86631 0.80930 0.79222 0.82266 1.20962 1.21693 1.20319 1.22756 1.02091 0.94240 0.97116 1.22414 0.99108 0.97417 0.82393 1.48650 1.32724 1.35055 1.17918 1.17516 0.78854 0.82857 0.84083 1.90828 1.55809 1.26061 1.66921 1.19555 0.91456 1.02598 0.95983 1.21547 1.00110 0.96089 0.92844 1.21119 0.95196 0.97302 0.96876 1.21344 0.92770 0.99946 0.99756 1.17230 0.78930 1.02607 0.92919 1.91557 1.31289 1.94214 1.93160 1.20911 0.90891 1.02830 0.91347 1.98417 1.56726 1.87606 1.56868 1.22631 0.94644 0.87865 0.97358 0.91817 0.91837 0.93054 0.95303 0.94923 0.80715 0.93031 0.89604 0.90306 0.89741 0.90881 0.83710 0.83456 0.83196 0.91314 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.04 37.16 0.30 -1.32 16 2 C -0.08 -1.09 0.68 -153.13 -0.10 -1.20 16 3 C 0.17 2.97 4.90 -4.04 -0.02 2.95 16 4 N -0.75 -16.17 4.69 -59.91 -0.28 -16.45 16 5 C -0.24 -6.51 10.47 -15.06 -0.16 -6.66 16 6 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 9 Si 0.88 20.47 27.73 -169.99 -4.71 15.75 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -5.90 6.52 56.52 0.37 -5.53 16 13 C -0.12 -1.33 6.16 -25.05 -0.15 -1.49 16 14 C 0.11 1.20 7.05 -2.32 -0.02 1.18 16 15 N -0.61 -8.02 3.29 -171.12 -0.56 -8.59 16 16 C 0.58 8.65 7.21 -12.36 -0.09 8.56 16 17 O -0.52 -8.92 15.53 5.31 0.08 -8.84 16 18 C -0.09 -1.29 5.47 -104.95 -0.57 -1.86 16 19 C -0.09 -1.03 7.98 -39.18 -0.31 -1.34 16 20 C -0.09 -0.91 10.03 -39.65 -0.40 -1.31 16 21 C -0.12 -1.28 10.02 -39.44 -0.40 -1.68 16 22 C 0.10 1.34 7.27 -39.44 -0.29 1.06 16 23 F -0.12 -1.64 16.83 2.25 0.04 -1.60 16 24 C -0.03 -0.45 6.34 -39.00 -0.25 -0.69 16 25 Cl -0.03 -0.38 26.48 -51.86 -1.37 -1.75 16 26 C 0.10 1.27 4.09 -2.98 -0.01 1.26 16 27 H 0.06 0.88 6.99 -51.93 -0.36 0.52 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.36 7.36 4.13 -40.82 -0.17 7.20 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.15 1.48 5.93 -52.49 -0.31 1.17 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.07 0.78 6.96 -51.93 -0.36 0.41 16 42 H 0.09 1.39 5.99 -51.93 -0.31 1.08 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -32.02 357.23 -8.51 -40.52 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.29 Total: 5.57 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.56 Total: -2.46 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.07 Total: -52.57 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.71 Total: 15.75 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.37 Total: -1.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.02 -8.51 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.781 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds