Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 110.29242 * 2 1 4 4 N 1.46493 * 109.46948 * 60.67870 * 3 2 1 5 5 C 1.36942 * 119.99880 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.38805 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99942 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00158 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47023 * 90.00249 * 9 7 5 11 11 H 1.48502 * 109.47680 * 209.99888 * 9 7 5 12 12 H 1.48502 * 109.47296 * 330.00300 * 9 7 5 13 13 C 1.54610 * 110.41601 * 237.80354 * 2 1 3 14 14 C 1.54597 * 102.91317 * 262.76445 * 13 2 1 15 15 N 1.48109 * 103.42226 * 322.86375 * 14 13 2 16 16 C 1.34779 * 127.03629 * 219.28805 * 15 14 13 17 17 O 1.21563 * 119.99608 * 355.07189 * 16 15 14 18 18 C 1.47773 * 120.00223 * 175.34791 * 16 15 14 19 19 C 1.39645 * 120.14169 * 39.62202 * 18 16 15 20 20 C 1.37892 * 119.91349 * 180.02562 * 19 18 16 21 21 C 1.38397 * 120.21023 * 0.02562 * 20 19 18 22 22 C 1.38467 * 120.29094 * 359.96283 * 21 20 19 23 23 F 1.35104 * 119.96294 * 180.02562 * 22 21 20 24 24 C 1.38385 * 120.07767 * 359.76130 * 22 21 20 25 25 Cl 1.73606 * 120.10227 * 180.25828 * 24 22 21 26 26 C 1.47486 * 105.93164 * 39.02405 * 15 14 13 27 27 H 1.09002 * 109.46531 * 299.32318 * 1 2 3 28 28 H 1.08994 * 109.46967 * 59.31817 * 1 2 3 29 29 H 1.08993 * 109.46811 * 179.32217 * 1 2 3 30 30 H 1.08994 * 109.47134 * 180.68107 * 3 2 1 31 31 H 1.09002 * 109.46401 * 300.68335 * 3 2 1 32 32 H 0.97003 * 120.00715 * 0.02562 * 4 3 2 33 33 H 0.97005 * 120.00127 * 180.02562 * 8 7 5 34 34 H 1.09005 * 110.73898 * 21.24895 * 13 2 1 35 35 H 1.08997 * 110.74392 * 144.57230 * 13 2 1 36 36 H 1.08999 * 110.61787 * 204.34725 * 14 13 2 37 37 H 1.09000 * 110.54684 * 81.34950 * 14 13 2 38 38 H 1.07998 * 120.04511 * 359.97136 * 19 18 16 39 39 H 1.07999 * 119.89648 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.85913 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.91296 * 94.14064 * 26 15 14 42 42 H 1.09002 * 109.91489 * 215.22003 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4351 0.0000 4 7 1.5956 2.1277 1.2042 5 6 1.9472 3.4331 1.4221 6 1 2.5670 3.9522 0.7060 7 6 1.5070 4.0892 2.5634 8 7 1.8445 5.3441 2.7726 9 14 0.4345 3.1917 3.8017 10 1 1.2956 2.5305 4.8150 11 1 -0.4644 4.1636 4.4745 12 1 -0.3803 2.1673 3.1003 13 6 2.0694 -0.7721 -1.2262 14 6 2.3677 -2.1743 -0.6476 15 7 2.8825 -1.8835 0.7103 16 6 3.8947 -2.5068 1.3455 17 8 4.4304 -3.4713 0.8350 18 6 4.3494 -2.0215 2.6651 19 6 3.4188 -1.5856 3.6107 20 6 3.8482 -1.1332 4.8404 21 6 5.1990 -1.1092 5.1407 22 6 6.1292 -1.5396 4.2096 23 9 7.4462 -1.5138 4.5099 24 6 5.7111 -2.0014 2.9739 25 17 6.8763 -2.5475 1.8086 26 6 2.0650 -0.7681 1.2229 27 1 -0.3632 0.5033 0.8960 28 1 -0.3633 0.5244 -0.8838 29 1 -0.3633 -1.0275 -0.0122 30 1 3.1504 1.4195 -0.0122 31 1 1.6948 1.9577 -0.8838 32 1 1.0387 1.6616 1.8473 33 1 1.5372 5.8025 3.5703 34 1 1.3136 -0.8288 -2.0096 35 1 2.9824 -0.3104 -1.6020 36 1 3.1244 -2.6829 -1.2450 37 1 1.4553 -2.7682 -0.5942 38 1 2.3641 -1.6020 3.3788 39 1 3.1283 -0.7958 5.5713 40 1 5.5292 -0.7533 6.1054 41 1 1.2331 -1.1568 1.8103 42 1 2.6786 -0.1105 1.8387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754708916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = -52.978259 kcal Electronic energy + Delta-G solvation = -27995.360351 eV Core-core repulsion = 23915.683453 eV Total energy + Delta-G solvation = -4079.676898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.14877 -41.71820 -40.06512 -38.97093 -37.68938 -36.53381 -34.38888 -33.09113 -32.23979 -31.72109 -30.29751 -27.84441 -27.43829 -25.76931 -24.40515 -23.94292 -23.05459 -21.04568 -20.53475 -19.47479 -19.03271 -17.91245 -17.83918 -17.45493 -16.92877 -16.83610 -16.52620 -16.44521 -15.94530 -15.47810 -15.35402 -15.13408 -14.74112 -14.56518 -14.40232 -14.10594 -14.00590 -13.82802 -13.36717 -13.24947 -13.17082 -12.91216 -12.89080 -12.80044 -12.68568 -12.59668 -12.21390 -12.11480 -11.85477 -11.81053 -11.48767 -11.41490 -11.05629 -10.91426 -10.23333 -9.92063 -9.77496 -9.24718 -7.96483 -5.30964 -0.50731 -0.22145 0.80869 1.40990 1.44780 1.48023 1.55748 1.75838 2.32800 2.55136 2.85642 3.18597 3.34707 3.41347 3.55300 3.64625 3.71468 3.77969 3.99426 4.00754 4.20490 4.26862 4.33552 4.38533 4.51055 4.61473 4.68816 4.76631 4.78249 4.84477 4.90938 4.97740 5.04586 5.06421 5.08438 5.17346 5.29622 5.31539 5.47535 5.52989 5.81020 6.25697 6.31971 6.90495 7.14054 7.87330 8.10051 9.25349 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009894 B = 0.004831 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.386556 B = 5794.982138 C = 7543.387681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C 0.169 3.831 4 N -0.748 5.748 5 C -0.235 4.235 6 H 0.047 0.953 7 C -0.065 4.065 8 N -0.988 5.988 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.303 1.303 12 H -0.240 1.240 13 C -0.115 4.115 14 C 0.107 3.893 15 N -0.608 5.608 16 C 0.574 3.426 17 O -0.552 6.552 18 C -0.112 4.112 19 C -0.086 4.086 20 C -0.082 4.082 21 C -0.111 4.111 22 C 0.087 3.913 23 F -0.131 7.131 24 C -0.053 4.053 25 Cl -0.045 7.045 26 C 0.097 3.903 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.010 0.990 31 H 0.028 0.972 32 H 0.370 0.630 33 H 0.257 0.743 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.098 0.902 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 -19.249 1.319 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 C 0.043 3.957 4 N -0.395 5.395 5 C -0.366 4.366 6 H 0.065 0.935 7 C -0.256 4.256 8 N -0.639 5.639 9 Si 0.776 3.224 10 H -0.189 1.189 11 H -0.231 1.231 12 H -0.164 1.164 13 C -0.153 4.153 14 C -0.014 4.014 15 N -0.341 5.341 16 C 0.363 3.637 17 O -0.431 6.431 18 C -0.116 4.116 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.130 4.130 22 C 0.067 3.933 23 F -0.109 7.109 24 C -0.082 4.082 25 Cl -0.015 7.015 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.204 0.796 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.182 0.818 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.116 0.884 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.572 -19.683 0.912 19.713 hybrid contribution 0.402 0.421 0.591 0.830 sum -0.170 -19.262 1.503 19.321 Atomic orbital electron populations 1.21823 0.91526 1.02901 1.02562 1.21628 0.97562 0.93430 0.95060 1.20788 0.95507 0.90638 0.88762 1.42585 1.62180 1.10265 1.24426 1.18966 1.25017 0.88377 1.04220 0.93517 1.25571 1.02642 0.96678 1.00732 1.69918 1.52062 1.12459 1.29425 0.85490 0.79040 0.78447 0.79453 1.18878 1.23053 1.16442 1.22736 1.02270 0.93500 0.96840 1.22595 0.99939 0.97614 0.81219 1.48706 1.32192 1.34589 1.18567 1.17721 0.78861 0.82629 0.84479 1.90802 1.56848 1.27556 1.67872 1.19654 0.91690 1.03901 0.96331 1.21846 1.00616 0.95180 0.92794 1.21566 0.95591 0.95910 0.96883 1.21748 0.92630 0.98401 1.00226 1.17501 0.79168 1.03456 0.93161 1.91535 1.31852 1.94363 1.93163 1.21141 0.91055 1.04218 0.91741 1.98397 1.57454 1.87974 1.57712 1.22664 0.95006 0.87599 0.97226 0.93285 0.91638 0.89818 0.97192 0.95427 0.79582 0.93478 0.86758 0.91663 0.90413 0.88163 0.81832 0.80103 0.80330 0.88384 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.04 71.98 0.58 -1.99 16 2 C -0.08 -1.76 0.68 -51.29 -0.03 -1.80 16 3 C 0.17 5.78 4.90 86.38 0.42 6.20 16 4 N -0.75 -31.14 4.69 -343.45 -1.61 -32.75 16 5 C -0.23 -12.72 10.47 84.03 0.88 -11.84 16 6 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 7 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 8 N -0.99 -61.52 13.97 21.65 0.30 -61.22 16 9 Si 0.95 40.72 27.73 68.60 1.90 42.63 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.24 -8.77 6.52 99.48 0.65 -8.12 16 13 C -0.11 -2.17 6.16 31.69 0.20 -1.97 16 14 C 0.11 2.07 7.05 86.61 0.61 2.68 16 15 N -0.61 -14.71 3.29 -813.57 -2.68 -17.39 16 16 C 0.57 16.70 7.21 86.76 0.63 17.33 16 17 O -0.55 -18.97 15.53 -3.91 -0.06 -19.03 16 18 C -0.11 -3.02 5.47 -20.08 -0.11 -3.13 16 19 C -0.09 -1.78 7.98 22.53 0.18 -1.60 16 20 C -0.08 -1.42 10.03 22.23 0.22 -1.20 16 21 C -0.11 -2.12 10.02 22.36 0.22 -1.89 16 22 C 0.09 2.21 7.27 22.36 0.16 2.38 16 23 F -0.13 -3.46 16.83 44.97 0.76 -2.70 16 24 C -0.05 -1.52 6.34 22.64 0.14 -1.38 16 25 Cl -0.04 -1.37 26.48 -2.72 -0.07 -1.45 16 26 C 0.10 2.23 4.09 86.53 0.35 2.58 16 27 H 0.05 1.13 6.99 -2.39 -0.02 1.11 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.01 0.38 8.13 -2.39 -0.02 0.36 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.37 13.96 4.13 -92.71 -0.38 13.58 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.11 1.55 7.86 -2.38 -0.02 1.53 16 35 H 0.06 1.42 7.86 -2.39 -0.02 1.41 16 36 H 0.08 1.64 7.90 -2.39 -0.02 1.62 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.16 2.67 5.93 -2.91 -0.02 2.65 16 39 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.10 1.71 6.96 -2.39 -0.02 1.70 16 42 H 0.07 1.98 5.99 -2.39 -0.01 1.97 16 Total: -1.00 -73.45 357.23 4.08 -69.37 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.62 Total: 21.38 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.92 Total: 1.18 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.99 Total: -111.37 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.76 Total: -2.70 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.90 Total: 42.63 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.45 kcal Total: -73.45 4.08 -69.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.393 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds