Wall clock time and date at job start Sat Apr 11 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47257 * 2 1 4 4 S 1.81399 * 109.47155 * 239.99414 * 2 1 3 5 5 C 1.81398 * 102.99924 * 65.00394 * 4 2 1 6 6 C 1.50701 * 109.47118 * 180.02562 * 5 4 2 7 7 O 1.21299 * 119.99864 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00142 * 179.97438 * 6 5 4 9 9 C 1.40035 * 120.00232 * 176.03796 * 8 6 5 10 10 C 1.38850 * 120.04598 * 214.96492 * 9 8 6 11 11 C 1.38115 * 119.95427 * 179.77233 * 10 9 8 12 12 C 1.38473 * 120.04117 * 0.49789 * 11 10 9 13 13 F 1.35104 * 119.95072 * 179.73075 * 12 11 10 14 14 C 1.38471 * 120.09562 * 359.75360 * 12 11 10 15 15 C 1.38118 * 120.04132 * 359.97438 * 14 12 11 16 16 C 1.50708 * 109.46832 * 119.99528 * 2 1 3 17 17 O 1.21286 * 119.99838 * 100.00191 * 16 2 1 18 18 N 1.34773 * 119.99886 * 280.27423 * 16 2 1 19 19 C 1.46504 * 120.00200 * 359.72654 * 18 16 2 20 20 C 1.37094 * 120.00060 * 179.72787 * 18 16 2 21 21 H 1.08001 * 120.00334 * 33.56255 * 20 18 16 22 22 C 1.38952 * 120.00158 * 213.56806 * 20 18 16 23 23 N 1.31414 * 120.00086 * 5.63521 * 22 20 18 24 24 Si 1.86802 * 120.00197 * 185.64364 * 22 20 18 25 25 H 1.48505 * 109.46949 * 89.99647 * 24 22 20 26 26 H 1.48495 * 109.47166 * 209.99415 * 24 22 20 27 27 H 1.48502 * 109.47136 * 329.99890 * 24 22 20 28 28 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47043 * 300.00597 * 1 2 3 30 30 H 1.08998 * 109.46844 * 60.00282 * 1 2 3 31 31 H 1.08999 * 109.46790 * 299.99914 * 5 4 2 32 32 H 1.08994 * 109.47001 * 59.99984 * 5 4 2 33 33 H 0.97001 * 120.00000 * 356.04066 * 8 6 5 34 34 H 1.07997 * 120.02095 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.97588 * 180.23297 * 11 10 9 36 36 H 1.07999 * 119.97942 * 179.97438 * 14 12 11 37 37 H 1.07997 * 120.02280 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.46858 * 84.71961 * 19 18 16 39 39 H 1.08999 * 109.46876 * 204.72167 * 19 18 16 40 40 H 1.09003 * 109.46638 * 324.71976 * 19 18 16 41 41 H 0.96996 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8553 -1.4810 5 6 1.5665 0.2151 -2.8309 6 6 1.9974 -0.3699 -4.1512 7 8 2.6264 -1.4067 -4.1787 8 7 1.6840 0.2589 -5.3012 9 6 2.1547 -0.2393 -6.5224 10 6 2.4977 0.6358 -7.5444 11 6 2.9662 0.1426 -8.7464 12 6 3.0841 -1.2239 -8.9363 13 9 3.5374 -1.7046 -10.1148 14 6 2.7376 -2.0986 -7.9202 15 6 2.2740 -1.6092 -6.7147 16 6 2.0323 -0.7104 1.2306 17 8 2.4064 -1.8617 1.1560 18 7 2.0606 -0.0680 2.4151 19 6 1.6087 1.3227 2.5052 20 6 2.5122 -0.7159 3.5356 21 1 3.3001 -1.4501 3.4542 22 6 1.9563 -0.4282 4.7761 23 7 0.9246 0.3813 4.8620 24 14 2.6756 -1.1917 6.3218 25 1 3.7332 -0.3031 6.8668 26 1 1.6030 -1.3633 7.3344 27 1 3.2623 -2.5157 5.9930 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.4793 0.2879 -2.8037 32 1 2.0003 1.2082 -2.7142 33 1 1.1324 1.0566 -5.2831 34 1 2.4021 1.7016 -7.3980 35 1 3.2366 0.8232 -9.5403 36 1 2.8299 -3.1641 -8.0705 37 1 2.0035 -2.2916 -5.9226 38 1 0.5264 1.3455 2.6322 39 1 2.0850 1.8048 3.3589 40 1 1.8786 1.8523 1.5915 41 1 0.5363 0.5819 5.7280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:46 Heat of formation + Delta-G solvation = -70.151643 kcal Electronic energy + Delta-G solvation = -25660.368696 eV Core-core repulsion = 21581.990811 eV Total energy + Delta-G solvation = -4078.377885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14343 -40.80511 -38.65120 -38.53906 -35.00415 -34.70641 -32.89853 -31.52396 -31.35762 -30.86610 -28.53826 -26.35646 -25.07067 -23.72365 -23.36490 -22.95985 -20.99481 -19.32907 -18.35637 -17.81242 -17.47969 -16.92645 -16.44832 -16.32196 -15.94191 -15.83493 -15.59476 -14.77133 -14.69303 -14.40885 -14.16227 -14.01456 -13.90692 -13.71420 -13.41140 -13.32736 -13.00985 -12.78964 -12.54489 -12.54102 -11.73947 -11.56210 -11.53638 -11.47644 -11.25659 -11.08452 -10.93376 -10.61341 -10.41317 -10.35138 -10.17413 -9.46830 -9.43567 -9.02239 -8.49275 -8.43586 -7.63216 -7.31129 -6.37144 -4.01786 0.70109 0.86950 1.52834 2.23516 2.71402 2.74683 3.15419 3.23556 3.26151 3.29872 3.80224 3.96318 4.11512 4.27321 4.43973 4.49462 4.71514 4.81157 4.84358 4.98479 5.00575 5.04098 5.16371 5.32531 5.37170 5.52647 5.58558 5.73983 5.85326 5.90450 5.91173 6.00658 6.03613 6.24407 6.41045 6.57408 6.72504 6.91353 7.08412 7.51694 7.74614 8.12951 8.42400 9.12225 9.31477 9.89441 10.68658 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037775 B = 0.001863 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.046420 B =15029.187809 C =15455.912253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.097 0.903 4 S -0.112 6.112 5 C -0.154 4.154 6 C 0.534 3.466 7 O -0.491 6.491 8 N -0.674 5.674 9 C 0.140 3.860 10 C -0.117 4.117 11 C -0.135 4.135 12 C 0.080 3.920 13 F -0.142 7.142 14 C -0.133 4.133 15 C -0.092 4.092 16 C 0.473 3.527 17 O -0.564 6.564 18 N -0.440 5.440 19 C 0.110 3.890 20 C -0.305 4.305 21 H 0.095 0.905 22 C 0.035 3.965 23 N -0.883 5.883 24 Si 0.927 3.073 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.268 1.268 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 7.470 -22.997 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.230 4.230 3 H 0.115 0.885 4 S 0.114 5.886 5 C -0.305 4.305 6 C 0.321 3.679 7 O -0.363 6.363 8 N -0.321 5.321 9 C 0.045 3.955 10 C -0.138 4.138 11 C -0.155 4.155 12 C 0.060 3.940 13 F -0.120 7.120 14 C -0.152 4.152 15 C -0.112 4.112 16 C 0.259 3.741 17 O -0.447 6.447 18 N -0.160 5.160 19 C -0.034 4.034 20 C -0.433 4.433 21 H 0.112 0.888 22 C -0.169 4.169 23 N -0.522 5.522 24 Si 0.754 3.246 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.192 1.192 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.249 0.751 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.587 5.282 -22.892 23.547 hybrid contribution -0.787 1.581 0.780 1.931 sum -2.374 6.863 -22.112 23.274 Atomic orbital electron populations 1.21937 0.91957 1.03675 1.02089 1.23574 1.00230 1.02772 0.96461 0.88530 1.88142 1.73366 1.32159 0.94898 1.23584 1.06148 1.04805 0.95991 1.19986 0.79037 0.84506 0.84408 1.90782 1.37271 1.21752 1.86505 1.43459 1.53054 1.31470 1.04118 1.17771 0.99162 0.92723 0.85827 1.20750 1.00657 0.99645 0.92743 1.20911 1.02274 0.93627 0.98646 1.17718 1.01512 0.92428 0.82370 1.91498 1.86805 1.88790 1.44932 1.21111 1.01094 1.00516 0.92484 1.21241 0.98572 0.94358 0.97042 1.19232 0.84299 0.86717 0.83884 1.90576 1.51883 1.17273 1.84989 1.43374 1.55857 1.10286 1.06456 1.21542 1.00228 0.82952 0.98671 1.19568 1.17664 1.22466 0.83626 0.88772 1.25462 0.94979 0.96728 0.99719 1.69910 1.21315 1.35282 1.25645 0.85905 0.78375 0.79800 0.80529 1.20330 1.20854 1.19223 0.90997 0.90747 0.92846 0.86996 0.87150 0.75062 0.84586 0.84358 0.84270 0.83137 0.92673 0.91009 0.95737 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.01 37.16 0.33 -1.76 16 2 C -0.10 -1.75 2.47 -27.88 -0.07 -1.82 16 3 H 0.10 1.51 6.37 -51.92 -0.33 1.18 16 4 S -0.11 -1.95 19.53 -107.50 -2.10 -4.05 16 5 C -0.15 -1.64 6.12 36.01 0.22 -1.42 16 6 C 0.53 6.16 7.69 -10.99 -0.08 6.08 16 7 O -0.49 -7.77 13.33 5.54 0.07 -7.69 16 8 N -0.67 -5.33 5.34 -9.85 -0.05 -5.39 16 9 C 0.14 1.27 6.29 -83.66 -0.53 0.74 16 10 C -0.12 -0.83 9.96 -39.40 -0.39 -1.22 16 11 C -0.14 -1.02 10.02 -39.54 -0.40 -1.42 16 12 C 0.08 0.74 7.30 -39.41 -0.29 0.45 16 13 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 14 C -0.13 -1.26 10.02 -39.54 -0.40 -1.66 16 15 C -0.09 -0.97 8.69 -39.40 -0.34 -1.31 16 16 C 0.47 11.47 6.81 -10.98 -0.07 11.40 16 17 O -0.56 -16.00 15.86 5.55 0.09 -15.91 16 18 N -0.44 -11.04 2.98 -122.19 -0.36 -11.41 16 19 C 0.11 2.32 7.86 59.85 0.47 2.79 16 20 C -0.30 -8.41 9.04 -14.93 -0.13 -8.55 16 21 H 0.09 2.73 7.61 -52.49 -0.40 2.33 16 22 C 0.03 0.91 5.17 -17.47 -0.09 0.82 16 23 N -0.88 -23.06 11.08 55.50 0.61 -22.45 16 24 Si 0.93 20.65 29.56 -169.99 -5.02 15.62 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.18 6.74 -51.93 -0.35 0.83 16 30 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16 31 H 0.11 0.91 7.14 -51.92 -0.37 0.54 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.41 1.69 8.82 -40.82 -0.36 1.33 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 1.80 6.26 -52.49 -0.33 1.47 16 38 H 0.05 1.18 6.97 -51.93 -0.36 0.81 16 39 H 0.07 1.61 7.19 -51.93 -0.37 1.23 16 40 H 0.02 0.42 6.18 -51.93 -0.32 0.10 16 41 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -34.51 361.68 -7.85 -42.35 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.80 Total: 1.72 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.77 Total: 3.12 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.20 Total: -39.24 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.16 Total: -23.60 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.10 Total: -4.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.51 -7.85 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.797 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds