Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20761 * 120.00039 * 2 1 4 4 C 1.50696 * 120.00185 * 180.02562 * 2 1 3 5 5 C 1.50703 * 109.47533 * 180.02562 * 4 2 1 6 6 C 1.38260 * 119.94140 * 89.99535 * 5 4 2 7 7 C 1.38153 * 120.05418 * 180.02562 * 6 5 4 8 8 C 1.38731 * 119.94118 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05611 * 179.97438 * 8 7 6 10 10 S 1.52206 * 113.99641 * 89.99930 * 9 8 7 11 11 O 1.42104 * 104.27662 * 191.07248 * 10 9 8 12 12 O 1.42098 * 104.27853 * 318.93561 * 10 9 8 13 13 C 1.81406 * 104.44659 * 75.00470 * 10 9 8 14 14 C 1.53001 * 109.46907 * 179.97438 * 13 10 9 15 15 C 1.52994 * 109.47125 * 299.99829 * 14 13 10 16 16 C 1.52997 * 109.47082 * 60.00166 * 14 13 10 17 17 C 1.50695 * 109.46779 * 179.97438 * 14 13 10 18 18 H 1.08003 * 120.00364 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99926 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99796 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 120.00102 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47100 * 89.99830 * 21 19 17 23 23 H 1.48504 * 109.46830 * 210.00052 * 21 19 17 24 24 H 1.48497 * 109.47115 * 329.99902 * 21 19 17 25 25 C 1.38729 * 119.89124 * 0.27549 * 8 7 6 26 26 C 1.38153 * 119.94169 * 359.42767 * 25 8 7 27 27 H 1.08996 * 109.47248 * 240.00007 * 1 2 3 28 28 H 1.09001 * 109.46963 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47188 * 119.99675 * 1 2 3 30 30 H 1.08997 * 109.47381 * 60.00006 * 4 2 1 31 31 H 1.09008 * 109.47027 * 299.99988 * 4 2 1 32 32 H 1.08000 * 119.97757 * 0.02881 * 6 5 4 33 33 H 1.07996 * 120.03082 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.46955 * 299.99555 * 13 10 9 35 35 H 1.09000 * 109.47170 * 59.99624 * 13 10 9 36 36 H 1.09001 * 109.47270 * 60.00255 * 15 14 13 37 37 H 1.09000 * 109.46790 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.47328 * 299.99856 * 15 14 13 39 39 H 1.09004 * 109.47600 * 59.99791 * 16 14 13 40 40 H 1.09000 * 109.47390 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.47001 * 299.99554 * 16 14 13 42 42 H 0.96998 * 119.99506 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.03172 * 179.71922 * 25 8 7 44 44 H 1.08002 * 119.97290 * 180.28092 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7421 -1.0297 0.0002 6 6 4.4201 -0.9044 1.1986 7 6 5.7783 -0.6514 1.2020 8 6 6.4617 -0.5227 0.0016 9 8 7.7976 -0.2734 0.0022 10 16 8.6612 -1.5268 0.0012 11 8 9.9729 -1.0488 0.2665 12 8 8.0048 -2.4054 0.9047 13 6 8.5442 -2.1556 -1.6964 14 6 9.3809 -3.4299 -1.8270 15 6 10.8420 -3.1164 -1.4988 16 6 8.8552 -4.4872 -0.8541 17 6 9.2832 -3.9526 -3.2370 18 1 8.6845 -3.4282 -3.9671 19 6 9.9589 -5.0998 -3.5953 20 7 10.6884 -5.7381 -2.7064 21 14 9.8384 -5.7474 -5.3434 22 1 10.9194 -5.1504 -6.1680 23 1 9.9813 -7.2255 -5.3345 24 1 8.5186 -5.3811 -5.9170 25 6 5.7779 -0.6428 -1.1995 26 6 4.4209 -0.9018 -1.1976 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.9972 -1.8762 -0.8908 31 1 1.9971 -1.8770 0.8892 32 1 3.8876 -1.0043 2.1329 33 1 6.3074 -0.5532 2.1383 34 1 7.5031 -2.3786 -1.9303 35 1 8.9191 -1.4025 -2.3895 36 1 10.9124 -2.7385 -0.4789 37 1 11.4382 -4.0241 -1.5923 38 1 11.2166 -2.3632 -2.1920 39 1 7.8142 -4.7105 -1.0878 40 1 9.4516 -5.3948 -0.9467 41 1 8.9256 -4.1093 0.1659 42 1 11.1634 -6.5453 -2.9584 43 1 6.3068 -0.5385 -2.1354 44 1 3.8889 -0.9998 -2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296894820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -120.088689 kcal Electronic energy + Delta-G solvation = -28157.514254 eV Core-core repulsion = 24168.138490 eV Total energy + Delta-G solvation = -3989.375764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98910 -39.86126 -37.99479 -36.67400 -36.32243 -35.47452 -32.84998 -31.74164 -31.24155 -30.59254 -27.17995 -26.83450 -25.73809 -25.25894 -23.14132 -22.80179 -20.48866 -19.91389 -19.41502 -17.98142 -17.40741 -16.83167 -16.33565 -16.14580 -15.99982 -15.69293 -15.04136 -14.99602 -14.82966 -14.66491 -13.98410 -13.69482 -13.41423 -13.16459 -13.08618 -12.91457 -12.66806 -12.63900 -12.53685 -12.17823 -12.13537 -12.07991 -11.83010 -11.54901 -11.18957 -11.09998 -11.04874 -10.97559 -10.74564 -10.41148 -10.31255 -10.12348 -10.08181 -9.68058 -9.55889 -9.15369 -8.85232 -8.65986 -8.42260 -6.05639 -4.17683 0.42941 1.16732 1.21025 1.62526 2.58055 3.24228 3.31510 3.33066 3.33556 3.85847 4.13876 4.30301 4.34849 4.46060 4.53310 4.67091 4.69884 4.85298 5.00613 5.02581 5.07026 5.13079 5.20024 5.21887 5.39066 5.54631 5.61974 5.62500 5.76959 5.92760 6.10240 6.19125 6.27008 6.32203 6.66987 6.74802 6.77183 6.88206 7.01911 7.16969 7.29242 7.48125 7.65650 7.95961 8.06882 8.30307 8.80528 9.47721 10.95829 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003356 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.810746 B = 8341.410967 C = 9657.288858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.352 3.648 3 O -0.446 6.446 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.093 4.093 7 C -0.090 4.090 8 C 0.079 3.921 9 O -0.678 6.678 10 S 2.575 3.425 11 O -0.935 6.935 12 O -0.957 6.957 13 C -0.604 4.604 14 C 0.086 3.914 15 C -0.166 4.166 16 C -0.163 4.163 17 C -0.502 4.502 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.125 4.125 26 C -0.091 4.091 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.027 0.973 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.144 0.856 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.458 7.888 5.161 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.226 3.774 3 O -0.319 6.319 4 C -0.172 4.172 5 C -0.071 4.071 6 C -0.111 4.111 7 C -0.110 4.110 8 C 0.038 3.962 9 O -0.637 6.637 10 S 2.676 3.324 11 O -0.933 6.933 12 O -0.956 6.956 13 C -0.736 4.736 14 C 0.084 3.916 15 C -0.224 4.224 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.145 4.145 26 C -0.109 4.109 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.162 0.838 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.718 8.583 5.908 21.423 hybrid contribution 0.065 -0.604 -1.667 1.775 sum -18.653 7.979 4.240 20.726 Atomic orbital electron populations 1.22322 0.94095 1.05062 1.04649 1.24580 0.91835 0.90018 0.70937 1.90473 1.71936 1.34896 1.34546 1.21219 0.91710 0.98097 1.06181 1.19572 0.94604 0.99405 0.93521 1.20841 0.93184 0.99182 0.97912 1.21241 0.94756 0.97660 0.97332 1.18046 0.78361 1.04979 0.94852 1.85748 1.24654 1.60595 1.92688 1.06133 0.74205 0.72780 0.79305 1.93585 1.36464 1.78314 1.84965 1.93582 1.74089 1.65749 1.62156 1.30796 1.10464 1.11872 1.20440 1.17900 0.90083 0.85920 0.97738 1.22300 0.99380 1.03094 0.97581 1.22273 1.00705 1.03548 0.95572 1.20934 1.29921 1.09381 0.93935 0.92262 1.24938 0.94938 0.96448 0.97386 1.69801 1.30653 1.18321 1.33351 0.86525 0.78429 0.78064 0.84553 1.20635 1.21119 1.19958 1.21391 0.95487 1.00381 0.97229 1.20823 0.93092 0.98940 0.98015 0.88897 0.89999 0.88859 0.86920 0.86985 0.84844 0.84321 0.86043 0.85809 0.95427 0.88457 0.94322 0.94431 0.88564 0.95301 0.92709 0.83849 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.78 10.26 36.00 0.37 -0.41 16 2 C 0.35 2.58 7.26 -29.04 -0.21 2.37 16 3 O -0.45 -5.37 16.76 6.00 0.10 -5.27 16 4 C -0.13 -0.84 5.76 -29.04 -0.17 -1.01 16 5 C -0.07 -0.74 4.38 -104.60 -0.46 -1.20 16 6 C -0.09 -1.08 9.69 -39.60 -0.38 -1.46 16 7 C -0.09 -1.30 9.05 -39.43 -0.36 -1.65 16 8 C 0.08 1.27 4.79 -39.22 -0.19 1.08 16 9 O -0.68 -12.14 10.05 -51.75 -0.52 -12.66 16 10 S 2.58 51.94 4.20 -107.50 -0.45 51.49 16 11 O -0.94 -21.34 15.71 -67.04 -1.05 -22.39 16 12 O -0.96 -20.20 13.88 -67.04 -0.93 -21.13 16 13 C -0.60 -12.14 4.41 37.16 0.16 -11.98 16 14 C 0.09 2.08 0.52 -155.67 -0.08 2.00 16 15 C -0.17 -4.13 7.78 37.15 0.29 -3.84 16 16 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 17 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -23.95 9.35 55.43 0.52 -23.44 16 21 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.12 -1.72 8.47 -39.43 -0.33 -2.05 16 26 C -0.09 -1.04 9.69 -39.60 -0.38 -1.42 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.11 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.11 0.45 8.08 -51.92 -0.42 0.03 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 2.17 6.63 -51.92 -0.34 1.83 16 35 H 0.12 2.26 8.14 -51.92 -0.42 1.83 16 36 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 37 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 41 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.14 1.73 7.53 -52.49 -0.40 1.33 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -34.42 366.26 -9.78 -44.20 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.12 Total: 3.30 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -1.82 Total: -35.04 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.52 Total: -23.44 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -2.40 Total: -61.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 51.94 SS G_CDS: -0.45 Total: 51.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.42 -9.78 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296894820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.891 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds