Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47348 * 2 1 4 4 N 1.46502 * 109.46955 * 119.99786 * 2 1 3 5 5 C 1.34779 * 120.00036 * 275.00316 * 4 2 1 6 6 O 1.21556 * 119.99775 * 359.97438 * 5 4 2 7 7 C 1.47860 * 120.00112 * 180.02562 * 5 4 2 8 8 C 1.39680 * 120.09925 * 359.71904 * 7 5 4 9 9 C 1.38041 * 120.03601 * 179.74833 * 8 7 5 10 10 C 1.38181 * 120.24290 * 0.55692 * 9 8 7 11 11 C 1.39184 * 120.20263 * 359.69311 * 10 9 8 12 12 S 1.76197 * 120.01899 * 179.97438 * 11 10 9 13 13 C 1.76196 * 100.00133 * 265.53195 * 12 11 10 14 14 H 1.07999 * 120.00238 * 5.12262 * 13 12 11 15 15 C 1.38736 * 119.99879 * 185.11928 * 13 12 11 16 16 N 1.31621 * 120.00138 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47087 * 89.99804 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99883 * 17 15 13 20 20 H 1.48500 * 109.47335 * 329.99625 * 17 15 13 21 21 C 1.38878 * 119.95934 * 0.02985 * 11 10 9 22 22 C 1.50696 * 109.47380 * 239.99986 * 2 1 3 23 23 O 1.21284 * 119.99958 * 240.00502 * 22 2 1 24 24 N 1.34779 * 120.00410 * 59.99900 * 22 2 1 25 25 C 1.46496 * 120.00210 * 180.02562 * 24 22 2 26 26 C 1.53005 * 109.47156 * 179.97438 * 25 24 22 27 27 F 1.39895 * 109.46953 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.46769 * 60.00078 * 1 2 3 29 29 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47414 * 300.00353 * 1 2 3 31 31 H 0.96993 * 120.00208 * 95.00210 * 4 2 1 32 32 H 1.07993 * 119.97650 * 0.02562 * 8 7 5 33 33 H 1.07994 * 119.88029 * 180.27805 * 9 8 7 34 34 H 1.07997 * 119.89809 * 179.72895 * 10 9 8 35 35 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.07992 * 120.11812 * 180.02562 * 21 11 10 37 37 H 0.96998 * 119.99739 * 359.97438 * 24 22 2 38 38 H 1.08996 * 109.47310 * 300.00083 * 25 24 22 39 39 H 1.09002 * 109.47063 * 60.00392 * 25 24 22 40 40 H 1.08996 * 109.47190 * 300.00293 * 26 25 24 41 41 H 1.09002 * 109.46703 * 60.00308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6403 -0.7150 3.5644 8 6 2.9681 -2.0715 3.5054 9 6 3.4335 -2.7195 4.6319 10 6 3.5664 -2.0339 5.8242 11 6 3.2378 -0.6833 5.8957 12 16 3.4084 0.1860 7.4187 13 6 1.7684 0.0323 8.0442 14 1 1.0425 -0.5670 7.5149 15 6 1.4096 0.6811 9.2169 16 7 0.1847 0.5658 9.6845 17 14 2.6651 1.7182 10.1322 18 1 2.6095 3.1162 9.6345 19 1 2.3593 1.6975 11.5853 20 1 4.0244 1.1654 9.9046 21 6 2.7742 -0.0217 4.7661 22 6 2.0324 -0.7104 -1.2304 23 8 2.7296 -1.6965 -1.1191 24 7 1.7069 -0.2500 -2.4546 25 6 2.1948 -0.9409 -3.6507 26 6 1.6844 -0.2200 -4.9000 27 9 2.1499 -0.8802 -6.0422 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2490 -1.6317 1.1527 32 1 2.8616 -2.6125 2.5768 33 1 3.6905 -3.7673 4.5823 34 1 3.9269 -2.5475 6.7032 35 1 -0.0662 1.0198 10.5042 36 1 2.5188 1.0263 4.8185 37 1 1.1489 0.5384 -2.5436 38 1 3.2848 -0.9414 -3.6508 39 1 1.8310 -1.9685 -3.6505 40 1 0.5945 -0.2200 -4.8996 41 1 2.0479 0.8076 -4.9004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337032229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -103.591328 kcal Electronic energy + Delta-G solvation = -25571.532044 eV Core-core repulsion = 21491.704106 eV Total energy + Delta-G solvation = -4079.827939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.29647 -40.81160 -39.66051 -37.92281 -35.85805 -35.20646 -32.50192 -32.16516 -30.72245 -30.50666 -29.43509 -25.68216 -25.35201 -23.93427 -23.02980 -22.31312 -20.96633 -20.44604 -18.91535 -17.75607 -17.32031 -17.11507 -16.93471 -16.44324 -15.86524 -15.66960 -15.44427 -15.30164 -14.99657 -14.85681 -14.69345 -14.40355 -14.03447 -13.80938 -13.60854 -13.44410 -12.97428 -12.88262 -12.75278 -12.40521 -12.03708 -11.90976 -11.88651 -11.63238 -11.36259 -11.20289 -11.10260 -10.63479 -10.40500 -9.99669 -9.87390 -9.79533 -9.37727 -9.20191 -9.08471 -8.66002 -8.15718 -7.13638 -6.33202 -4.08593 1.08371 1.59592 2.03155 2.24735 2.85844 2.96501 3.09444 3.26931 3.38589 3.50098 3.80720 4.03255 4.06282 4.07526 4.26006 4.32667 4.61196 4.65388 4.71728 4.81074 4.89908 4.99368 5.05179 5.08312 5.13829 5.21565 5.24180 5.39851 5.65542 5.68828 5.78231 5.79541 5.90879 6.13204 6.19135 6.50591 6.58451 6.76203 6.82416 7.10494 7.38327 7.55401 7.90937 8.16039 8.44431 9.10693 10.76163 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.001976 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.046340 B =14166.019552 C =14677.000223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.118 0.882 4 N -0.717 5.717 5 C 0.571 3.429 6 O -0.533 6.533 7 C -0.154 4.154 8 C -0.082 4.082 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.087 4.087 12 S -0.112 6.112 13 C -0.509 4.509 14 H 0.091 0.909 15 C 0.095 3.905 16 N -0.876 5.876 17 Si 0.858 3.142 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.239 1.239 21 C -0.015 4.015 22 C 0.517 3.483 23 O -0.527 6.527 24 N -0.727 5.727 25 C 0.086 3.914 26 C 0.054 3.946 27 F -0.206 7.206 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.409 0.591 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.272 0.728 36 H 0.141 0.859 37 H 0.405 0.595 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -3.004 -26.618 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.136 0.864 4 N -0.372 5.372 5 C 0.360 3.640 6 O -0.410 6.410 7 C -0.158 4.158 8 C -0.101 4.101 9 C -0.159 4.159 10 C -0.070 4.070 11 C -0.198 4.198 12 S 0.122 5.878 13 C -0.656 4.656 14 H 0.109 0.891 15 C -0.114 4.114 16 N -0.512 5.512 17 Si 0.683 3.317 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.163 1.163 21 C -0.036 4.036 22 C 0.302 3.698 23 O -0.403 6.403 24 N -0.381 5.381 25 C -0.038 4.038 26 C -0.001 4.001 27 F -0.187 7.187 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.247 0.753 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.162 -2.299 -25.868 26.162 hybrid contribution -0.964 -0.275 -0.251 1.033 sum 2.198 -2.574 -26.119 26.338 Atomic orbital electron populations 1.22177 0.92518 1.03382 1.03931 1.20694 0.95870 0.98251 0.83231 0.86419 1.45658 1.68538 1.14859 1.08153 1.18364 0.76680 0.86308 0.82694 1.90773 1.49878 1.15510 1.84873 1.19735 1.07602 0.94649 0.93861 1.21235 0.97285 0.93171 0.98457 1.21061 1.01998 1.00033 0.92825 1.21916 0.94361 0.93201 0.97546 1.22192 1.01915 0.96631 0.99043 1.83073 1.19728 1.71691 1.13279 1.22252 0.93903 1.36840 1.12630 0.89069 1.24747 0.95209 0.95310 0.96150 1.69923 1.17298 1.42166 1.21786 0.86732 0.83193 0.81945 0.79879 1.19031 1.19805 1.16338 1.21882 0.91554 1.00467 0.89730 1.20717 0.79866 0.84611 0.84601 1.90737 1.37095 1.25971 1.86459 1.45642 1.54622 1.32657 1.05169 1.21891 1.01082 0.97512 0.83309 1.22048 1.00409 0.96328 0.81327 1.92812 1.90805 1.83293 1.51825 0.91159 0.91589 0.90027 0.75257 0.86119 0.85538 0.84865 0.91818 0.84118 0.75944 0.89986 0.89980 0.89870 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.38 37.16 0.35 -0.85 16 2 C 0.13 1.17 2.98 -69.08 -0.21 0.97 16 3 H 0.12 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.72 -8.50 4.90 -55.87 -0.27 -8.77 16 5 C 0.57 8.88 7.74 -12.32 -0.10 8.78 16 6 O -0.53 -9.76 16.01 5.32 0.09 -9.68 16 7 C -0.15 -2.55 5.87 -105.00 -0.62 -3.17 16 8 C -0.08 -1.15 9.54 -39.12 -0.37 -1.53 16 9 C -0.14 -2.00 10.02 -39.67 -0.40 -2.40 16 10 C -0.05 -0.86 9.79 -39.25 -0.38 -1.25 16 11 C -0.09 -1.81 5.45 -38.99 -0.21 -2.03 16 12 S -0.11 -2.70 19.38 -107.50 -2.08 -4.78 16 13 C -0.51 -14.57 10.01 30.92 0.31 -14.26 16 14 H 0.09 2.83 8.02 -52.49 -0.42 2.41 16 15 C 0.09 2.72 5.50 -17.46 -0.10 2.63 16 16 N -0.88 -26.18 13.97 55.49 0.78 -25.41 16 17 Si 0.86 20.96 27.74 -169.99 -4.71 16.25 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 21 C -0.01 -0.29 9.34 -38.92 -0.36 -0.65 16 22 C 0.52 4.48 7.22 -10.99 -0.08 4.40 16 23 O -0.53 -6.45 15.84 5.55 0.09 -6.36 16 24 N -0.73 -3.63 5.45 -60.30 -0.33 -3.96 16 25 C 0.09 0.43 6.13 -4.04 -0.02 0.41 16 26 C 0.05 0.16 7.67 37.16 0.28 0.45 16 27 F -0.21 -1.34 17.36 2.25 0.04 -1.30 16 28 H 0.07 0.29 7.56 -51.93 -0.39 -0.10 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.41 4.50 5.82 -40.82 -0.24 4.26 16 32 H 0.12 1.30 6.40 -52.49 -0.34 0.96 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 2.97 7.65 -52.49 -0.40 2.56 16 37 H 0.41 0.79 7.89 -40.82 -0.32 0.47 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -35.37 372.41 -7.75 -43.12 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.04 Total: 3.79 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.91 Total: -8.49 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.17 Total: -38.14 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.17 Total: -16.04 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.08 Total: -4.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.37 -7.75 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337032229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.476 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds