Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47348 * 2 1 4 4 N 1.46502 * 109.46955 * 119.99786 * 2 1 3 5 5 C 1.34779 * 120.00036 * 275.00316 * 4 2 1 6 6 O 1.21556 * 119.99775 * 359.97438 * 5 4 2 7 7 C 1.47860 * 120.00112 * 180.02562 * 5 4 2 8 8 C 1.39680 * 120.09925 * 359.71904 * 7 5 4 9 9 C 1.38041 * 120.03601 * 179.74833 * 8 7 5 10 10 C 1.38181 * 120.24290 * 0.55692 * 9 8 7 11 11 C 1.39184 * 120.20263 * 359.69311 * 10 9 8 12 12 S 1.76197 * 120.01899 * 179.97438 * 11 10 9 13 13 C 1.76196 * 100.00133 * 265.53195 * 12 11 10 14 14 H 1.07999 * 120.00238 * 5.12262 * 13 12 11 15 15 C 1.38736 * 119.99879 * 185.11928 * 13 12 11 16 16 N 1.31621 * 120.00138 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47087 * 89.99804 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99883 * 17 15 13 20 20 H 1.48500 * 109.47335 * 329.99625 * 17 15 13 21 21 C 1.38878 * 119.95934 * 0.02985 * 11 10 9 22 22 C 1.50696 * 109.47380 * 239.99986 * 2 1 3 23 23 O 1.21284 * 119.99958 * 240.00502 * 22 2 1 24 24 N 1.34779 * 120.00410 * 59.99900 * 22 2 1 25 25 C 1.46496 * 120.00210 * 180.02562 * 24 22 2 26 26 C 1.53005 * 109.47156 * 179.97438 * 25 24 22 27 27 F 1.39895 * 109.46953 * 180.02562 * 26 25 24 28 28 H 1.09005 * 109.46769 * 60.00078 * 1 2 3 29 29 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47414 * 300.00353 * 1 2 3 31 31 H 0.96993 * 120.00208 * 95.00210 * 4 2 1 32 32 H 1.07993 * 119.97650 * 0.02562 * 8 7 5 33 33 H 1.07994 * 119.88029 * 180.27805 * 9 8 7 34 34 H 1.07997 * 119.89809 * 179.72895 * 10 9 8 35 35 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.07992 * 120.11812 * 180.02562 * 21 11 10 37 37 H 0.96998 * 119.99739 * 359.97438 * 24 22 2 38 38 H 1.08996 * 109.47310 * 300.00083 * 25 24 22 39 39 H 1.09002 * 109.47063 * 60.00392 * 25 24 22 40 40 H 1.08996 * 109.47190 * 300.00293 * 26 25 24 41 41 H 1.09002 * 109.46703 * 60.00308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6403 -0.7150 3.5644 8 6 2.9681 -2.0715 3.5054 9 6 3.4335 -2.7195 4.6319 10 6 3.5664 -2.0339 5.8242 11 6 3.2378 -0.6833 5.8957 12 16 3.4084 0.1860 7.4187 13 6 1.7684 0.0323 8.0442 14 1 1.0425 -0.5670 7.5149 15 6 1.4096 0.6811 9.2169 16 7 0.1847 0.5658 9.6845 17 14 2.6651 1.7182 10.1322 18 1 2.6095 3.1162 9.6345 19 1 2.3593 1.6975 11.5853 20 1 4.0244 1.1654 9.9046 21 6 2.7742 -0.0217 4.7661 22 6 2.0324 -0.7104 -1.2304 23 8 2.7296 -1.6965 -1.1191 24 7 1.7069 -0.2500 -2.4546 25 6 2.1948 -0.9409 -3.6507 26 6 1.6844 -0.2200 -4.9000 27 9 2.1499 -0.8802 -6.0422 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2490 -1.6317 1.1527 32 1 2.8616 -2.6125 2.5768 33 1 3.6905 -3.7673 4.5823 34 1 3.9269 -2.5475 6.7032 35 1 -0.0662 1.0198 10.5042 36 1 2.5188 1.0263 4.8185 37 1 1.1489 0.5384 -2.5436 38 1 3.2848 -0.9414 -3.6508 39 1 1.8310 -1.9685 -3.6505 40 1 0.5945 -0.2200 -4.8996 41 1 2.0479 0.8076 -4.9004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337032229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -129.420138 kcal Electronic energy + Delta-G solvation = -25572.652066 eV Core-core repulsion = 21491.704106 eV Total energy + Delta-G solvation = -4080.947960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.67680 -41.73336 -40.69272 -39.20088 -36.51046 -36.13520 -34.71323 -33.21054 -32.02520 -31.49741 -30.08289 -27.91520 -26.13894 -24.84298 -23.89822 -23.45611 -21.86547 -21.45489 -20.24962 -19.40212 -18.13490 -17.92977 -17.48006 -17.28758 -17.14164 -16.84796 -16.58297 -16.45770 -16.01170 -15.94239 -15.65061 -15.48686 -15.02063 -14.90225 -14.73209 -14.65792 -14.30052 -13.97290 -13.65545 -13.59276 -13.40474 -13.12346 -13.06661 -12.75984 -12.66046 -12.29505 -12.24714 -11.90842 -11.85476 -11.29469 -11.21442 -11.15464 -10.94552 -10.44263 -10.30666 -9.97716 -9.77356 -9.14397 -8.53322 -6.27619 -0.25126 0.18528 1.06030 1.31870 1.34382 1.44350 1.51803 1.67887 1.72865 2.19630 2.22127 2.58016 2.84668 2.95284 3.40210 3.50461 3.60660 3.84600 3.88953 3.94714 3.97633 4.05166 4.14349 4.29643 4.33343 4.41150 4.56665 4.59866 4.64388 4.74599 4.85874 4.87784 5.13808 5.16603 5.19247 5.21735 5.28255 5.40898 5.69349 5.79103 6.10838 6.26505 6.31855 6.88972 6.96171 7.01237 8.60132 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.001976 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.046340 B =14166.019552 C =14677.000223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.118 0.882 4 N -0.702 5.702 5 C 0.571 3.429 6 O -0.569 6.569 7 C -0.159 4.159 8 C -0.062 4.062 9 C -0.123 4.123 10 C -0.056 4.056 11 C -0.120 4.120 12 S -0.112 6.112 13 C -0.525 4.525 14 H 0.047 0.953 15 C 0.041 3.959 16 N -0.918 5.918 17 Si 0.922 3.078 18 H -0.261 1.261 19 H -0.258 1.258 20 H -0.227 1.227 21 C -0.037 4.037 22 C 0.522 3.478 23 O -0.565 6.565 24 N -0.705 5.705 25 C 0.087 3.913 26 C 0.056 3.944 27 F -0.226 7.226 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.416 0.584 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.142 0.858 35 H 0.278 0.722 36 H 0.113 0.887 37 H 0.423 0.577 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -3.935 -29.024 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 H 0.136 0.864 4 N -0.356 5.356 5 C 0.359 3.641 6 O -0.449 6.449 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.142 4.142 10 C -0.077 4.077 11 C -0.231 4.231 12 S 0.122 5.878 13 C -0.672 4.672 14 H 0.065 0.935 15 C -0.165 4.165 16 N -0.556 5.556 17 Si 0.743 3.257 18 H -0.186 1.186 19 H -0.182 1.182 20 H -0.151 1.151 21 C -0.059 4.059 22 C 0.307 3.693 23 O -0.444 6.444 24 N -0.359 5.359 25 C -0.037 4.037 26 C 0.001 3.999 27 F -0.208 7.208 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.182 0.818 33 H 0.192 0.808 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.939 -3.232 -28.338 28.792 hybrid contribution -1.269 -0.106 0.247 1.297 sum 2.671 -3.338 -28.091 28.414 Atomic orbital electron populations 1.22160 0.90924 1.03798 1.04614 1.20911 0.97054 0.98011 0.82420 0.86394 1.45544 1.67148 1.15023 1.07899 1.18228 0.76599 0.85858 0.83382 1.90755 1.51661 1.17007 1.85468 1.19890 1.07405 0.95918 0.93163 1.21721 0.94347 0.91813 1.00139 1.21535 0.99722 1.01874 0.91073 1.22093 0.94194 0.91854 0.99538 1.22097 1.05578 0.98191 0.97270 1.82621 1.16224 1.73067 1.15889 1.22385 0.95875 1.36151 1.12766 0.93515 1.25730 0.97315 0.96471 0.96944 1.70029 1.19421 1.43470 1.22668 0.85769 0.80973 0.79990 0.79005 1.18599 1.18190 1.15064 1.21654 0.93324 0.99684 0.91262 1.20523 0.79474 0.84029 0.85245 1.90724 1.38980 1.27654 1.86993 1.45435 1.53711 1.32714 1.04084 1.21884 1.00352 0.97493 0.83977 1.22203 1.01825 0.96586 0.79271 1.92772 1.91188 1.83861 1.52930 0.87350 0.91264 0.92510 0.74493 0.81835 0.80803 0.84060 0.91268 0.86904 0.73848 0.91360 0.90868 0.87419 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.38 71.98 0.68 -1.34 16 2 C 0.12 2.05 2.98 44.24 0.13 2.19 16 3 H 0.12 2.01 7.58 -2.39 -0.02 1.99 16 4 N -0.70 -15.57 4.90 -448.95 -2.20 -17.77 16 5 C 0.57 17.64 7.74 86.79 0.67 18.31 16 6 O -0.57 -21.43 16.01 -3.89 -0.06 -21.49 16 7 C -0.16 -5.22 5.87 -20.11 -0.12 -5.34 16 8 C -0.06 -1.54 9.54 22.57 0.22 -1.32 16 9 C -0.12 -3.10 10.02 22.21 0.22 -2.88 16 10 C -0.06 -1.91 9.79 22.48 0.22 -1.69 16 11 C -0.12 -5.15 5.45 22.65 0.12 -5.02 16 12 S -0.11 -5.58 19.38 -56.49 -1.09 -6.67 16 13 C -0.52 -31.51 10.01 67.94 0.68 -30.83 16 14 H 0.05 3.11 8.02 -2.91 -0.02 3.08 16 15 C 0.04 2.40 5.50 84.84 0.47 2.87 16 16 N -0.92 -56.89 13.97 21.64 0.30 -56.59 16 17 Si 0.92 43.99 27.74 68.60 1.90 45.89 16 18 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.23 -10.32 6.74 99.48 0.67 -9.65 16 21 C -0.04 -1.55 9.34 22.70 0.21 -1.34 16 22 C 0.52 7.92 7.22 87.66 0.63 8.55 16 23 O -0.57 -12.80 15.84 -3.04 -0.05 -12.85 16 24 N -0.71 -5.11 5.45 -463.06 -2.52 -7.63 16 25 C 0.09 0.70 6.13 86.38 0.53 1.23 16 26 C 0.06 0.18 7.67 71.98 0.55 0.74 16 27 F -0.23 -2.56 17.36 44.97 0.78 -1.78 16 28 H 0.11 0.53 7.56 -2.38 -0.02 0.52 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.42 8.06 5.82 -92.71 -0.54 7.52 16 32 H 0.16 2.71 6.40 -2.91 -0.02 2.70 16 33 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.11 5.17 7.65 -2.91 -0.02 5.15 16 37 H 0.42 0.11 7.89 -92.71 -0.73 -0.62 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: -1.00 -82.98 372.41 2.05 -80.93 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.22 Total: 13.84 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 5.22 Total: -15.88 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -4.42 Total: -82.00 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.11 Total: -34.33 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.09 Total: -6.67 kcal Total: -82.98 2.05 -80.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337032229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.491 kcal (2) G-P(sol) polarization free energy of solvation -82.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds