Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 5 5 S 1.81404 * 109.47309 * 64.99606 * 4 2 1 6 6 C 1.76199 * 103.00184 * 180.02562 * 5 4 2 7 7 C 1.38943 * 120.05254 * 359.72550 * 6 5 4 8 8 C 1.38102 * 119.94045 * 179.71822 * 7 6 5 9 9 C 1.38476 * 120.05504 * 0.55980 * 8 7 6 10 10 F 1.35103 * 119.94710 * 179.69945 * 9 8 7 11 11 C 1.38480 * 120.11047 * 359.71715 * 9 8 7 12 12 C 1.38104 * 120.05528 * 0.02562 * 11 9 8 13 13 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99488 * 120.00024 * 13 2 1 15 15 N 1.34777 * 120.00290 * 300.00464 * 13 2 1 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 2 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 O 1.21284 * 120.00579 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99600 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99831 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99608 * 0.02562 * 20 19 17 22 22 C 1.38942 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00352 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46736 * 60.00332 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47119 * 300.00482 * 24 22 20 28 28 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 30 30 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 31 31 H 1.08997 * 109.47937 * 185.00219 * 4 2 1 32 32 H 1.09002 * 109.47237 * 304.99957 * 4 2 1 33 33 H 1.07997 * 120.02853 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.97430 * 180.25372 * 8 7 6 35 35 H 1.08003 * 119.97412 * 179.97438 * 11 9 8 36 36 H 1.08001 * 120.02617 * 179.97438 * 12 11 9 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96995 * 120.00445 * 0.02562 * 19 17 16 41 41 H 0.97000 * 120.00497 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 16 1.5602 0.2155 -2.7266 6 6 2.2223 -0.7521 -4.0419 7 6 2.9196 -1.9211 -3.7630 8 6 3.4326 -2.6807 -4.7959 9 6 3.2625 -2.2722 -6.1081 10 9 3.7704 -3.0139 -7.1166 11 6 2.5728 -1.1045 -6.3883 12 6 2.0533 -0.3441 -5.3591 13 6 2.0324 -0.7103 1.2306 14 8 2.7297 -1.6964 1.1193 15 7 1.7068 -0.2498 2.4546 16 6 2.2001 -0.9368 3.6508 17 6 1.7022 -0.2232 4.8812 18 8 1.0044 0.7625 4.7699 19 7 2.0324 -0.6804 6.1053 20 6 1.5799 -0.0309 7.2247 21 1 0.9585 0.8469 7.1255 22 6 1.9199 -0.5025 8.4867 23 7 2.6756 -1.5708 8.6074 24 14 1.3027 0.3820 10.0119 25 1 -0.1823 0.3822 10.0171 26 1 1.8023 -0.3147 11.2243 27 1 1.7979 1.7820 10.0067 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 3.0560 -2.2379 -2.7396 34 1 3.9711 -3.5916 -4.5800 35 1 2.4418 -0.7878 -7.4125 36 1 1.5159 0.5667 -5.5782 37 1 1.1493 0.5390 2.5436 38 1 1.8373 -1.9647 3.6551 39 1 3.2901 -0.9363 3.6466 40 1 2.5908 -1.4685 6.1944 41 1 2.9126 -1.9003 9.4884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344181119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -106.769854 kcal Electronic energy + Delta-G solvation = -25050.610993 eV Core-core repulsion = 20970.645223 eV Total energy + Delta-G solvation = -4079.965770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.24394 -39.95758 -39.19284 -38.25844 -34.80355 -34.56825 -33.75915 -31.69061 -31.42996 -30.98997 -28.22568 -27.34891 -24.84317 -23.73923 -23.19087 -22.79032 -20.01924 -19.58950 -18.37545 -18.13055 -17.69098 -17.44744 -16.69217 -15.96397 -15.90954 -15.84511 -15.51441 -15.03503 -14.88415 -14.79476 -14.39947 -14.09044 -14.01368 -13.73828 -13.71363 -13.47822 -13.34614 -12.98360 -12.52445 -12.29702 -12.20991 -12.03621 -11.70385 -11.66248 -11.55291 -11.49019 -11.14061 -10.56503 -10.54277 -10.35850 -9.93584 -9.78053 -9.67459 -9.61181 -8.92233 -8.69820 -8.15312 -7.71411 -6.55973 -3.98395 0.57674 0.75474 1.05983 2.00224 2.64961 3.05665 3.10383 3.18465 3.20416 3.30159 3.68121 3.85452 4.07228 4.23947 4.26363 4.40483 4.51210 4.71136 4.74273 4.80579 4.88110 5.04568 5.12156 5.22075 5.24862 5.34706 5.41055 5.53778 5.66773 5.68015 5.71145 5.73152 5.82309 5.87635 5.95810 6.00348 6.36269 6.55050 7.41381 7.65810 7.86452 8.27925 8.39864 8.99576 9.33650 9.81212 10.60639 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.001620 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.463643 B =17280.494236 C =17959.711748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.109 0.891 4 C -0.090 4.090 5 S -0.099 6.099 6 C -0.094 4.094 7 C -0.104 4.104 8 C -0.132 4.132 9 C 0.089 3.911 10 F -0.140 7.140 11 C -0.135 4.135 12 C -0.073 4.073 13 C 0.521 3.479 14 O -0.549 6.549 15 N -0.702 5.702 16 C 0.108 3.892 17 C 0.426 3.574 18 O -0.598 6.598 19 N -0.547 5.547 20 C -0.307 4.307 21 H 0.105 0.895 22 C 0.027 3.973 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.396 0.604 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 0.216 -26.006 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 H 0.127 0.873 4 C -0.238 4.238 5 S 0.146 5.854 6 C -0.208 4.208 7 C -0.128 4.128 8 C -0.152 4.152 9 C 0.067 3.933 10 F -0.119 7.119 11 C -0.156 4.156 12 C -0.097 4.097 13 C 0.304 3.696 14 O -0.428 6.428 15 N -0.355 5.355 16 C -0.019 4.019 17 C 0.212 3.788 18 O -0.484 6.484 19 N -0.182 5.182 20 C -0.436 4.436 21 H 0.123 0.877 22 C -0.176 4.176 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.251 0.749 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.230 0.770 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.151 1.105 -25.884 25.933 hybrid contribution 0.749 -1.154 0.817 1.600 sum -0.402 -0.049 -25.068 25.071 Atomic orbital electron populations 1.21906 0.91743 1.03523 1.03647 1.21001 0.98553 1.01048 0.91038 0.87312 1.23560 1.05512 1.01823 0.92924 1.85417 1.69756 1.33432 0.96762 1.21872 1.02541 0.98811 0.97532 1.21177 0.97785 0.93844 0.99992 1.21090 1.01882 1.01411 0.90824 1.17706 0.99010 0.91831 0.84766 1.91508 1.85219 1.75894 1.59232 1.21075 0.99576 0.94316 1.00630 1.20621 0.99419 0.99852 0.89823 1.20243 0.80352 0.84621 0.84348 1.90695 1.38570 1.26568 1.86930 1.45672 1.52887 1.32513 1.04471 1.20979 0.99916 0.96655 0.84393 1.19716 0.86796 0.87776 0.84523 1.90495 1.43102 1.28825 1.86016 1.41794 1.44870 1.27357 1.04178 1.19687 1.29873 1.11142 0.82933 0.87683 1.25332 0.96488 0.96341 0.99480 1.69603 1.35694 1.22521 1.25569 0.85862 0.79172 0.79196 0.79681 1.19748 1.20829 1.19754 0.91586 0.90961 0.90579 0.88180 0.88377 0.84390 0.84291 0.84228 0.84380 0.74928 0.89767 0.89774 0.77031 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.92 37.16 0.33 -1.01 16 2 C -0.09 -0.94 2.72 -91.77 -0.25 -1.19 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.09 -0.84 3.12 37.15 0.12 -0.73 16 5 S -0.10 -0.86 20.73 -107.50 -2.23 -3.08 16 6 C -0.09 -0.83 6.11 -39.06 -0.24 -1.07 16 7 C -0.10 -0.91 9.36 -39.37 -0.37 -1.28 16 8 C -0.13 -1.10 10.02 -39.54 -0.40 -1.50 16 9 C 0.09 0.77 7.30 -39.40 -0.29 0.48 16 10 F -0.14 -1.32 17.26 2.25 0.04 -1.28 16 11 C -0.14 -1.01 10.02 -39.54 -0.40 -1.40 16 12 C -0.07 -0.56 9.79 -39.37 -0.39 -0.95 16 13 C 0.52 7.25 7.15 -10.98 -0.08 7.17 16 14 O -0.55 -9.20 15.92 5.55 0.09 -9.11 16 15 N -0.70 -10.69 5.42 -61.47 -0.33 -11.02 16 16 C 0.11 1.89 6.15 -5.19 -0.03 1.85 16 17 C 0.43 9.42 7.85 -10.98 -0.09 9.33 16 18 O -0.60 -14.75 15.24 5.55 0.08 -14.67 16 19 N -0.55 -13.22 5.29 -10.96 -0.06 -13.28 16 20 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 21 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 22 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 23 N -0.89 -23.45 13.05 55.50 0.72 -22.72 16 24 Si 0.93 20.18 29.55 -169.99 -5.02 15.15 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 30 H 0.08 0.59 7.13 -51.93 -0.37 0.22 16 31 H 0.10 1.00 7.55 -51.93 -0.39 0.60 16 32 H 0.10 0.94 7.76 -51.92 -0.40 0.54 16 33 H 0.14 1.13 5.88 -52.49 -0.31 0.83 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.41 6.15 6.86 -40.82 -0.28 5.88 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.40 9.20 7.90 -40.82 -0.32 8.87 16 41 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -30.37 370.33 -8.38 -38.74 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -4.94 Total: 13.70 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.31 Total: 1.98 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.33 Total: -47.02 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.78 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.23 Total: -3.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.37 -8.38 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344181119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.025 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds