Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 5 5 S 1.81404 * 109.47309 * 64.99606 * 4 2 1 6 6 C 1.76199 * 103.00184 * 180.02562 * 5 4 2 7 7 C 1.38943 * 120.05254 * 359.72550 * 6 5 4 8 8 C 1.38102 * 119.94045 * 179.71822 * 7 6 5 9 9 C 1.38476 * 120.05504 * 0.55980 * 8 7 6 10 10 F 1.35103 * 119.94710 * 179.69945 * 9 8 7 11 11 C 1.38480 * 120.11047 * 359.71715 * 9 8 7 12 12 C 1.38104 * 120.05528 * 0.02562 * 11 9 8 13 13 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 14 14 O 1.21283 * 119.99488 * 120.00024 * 13 2 1 15 15 N 1.34777 * 120.00290 * 300.00464 * 13 2 1 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 2 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 O 1.21284 * 120.00579 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99600 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99831 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99608 * 0.02562 * 20 19 17 22 22 C 1.38942 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00352 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46736 * 60.00332 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47119 * 300.00482 * 24 22 20 28 28 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 30 30 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 31 31 H 1.08997 * 109.47937 * 185.00219 * 4 2 1 32 32 H 1.09002 * 109.47237 * 304.99957 * 4 2 1 33 33 H 1.07997 * 120.02853 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.97430 * 180.25372 * 8 7 6 35 35 H 1.08003 * 119.97412 * 179.97438 * 11 9 8 36 36 H 1.08001 * 120.02617 * 179.97438 * 12 11 9 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96995 * 120.00445 * 0.02562 * 19 17 16 41 41 H 0.97000 * 120.00497 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 16 1.5602 0.2155 -2.7266 6 6 2.2223 -0.7521 -4.0419 7 6 2.9196 -1.9211 -3.7630 8 6 3.4326 -2.6807 -4.7959 9 6 3.2625 -2.2722 -6.1081 10 9 3.7704 -3.0139 -7.1166 11 6 2.5728 -1.1045 -6.3883 12 6 2.0533 -0.3441 -5.3591 13 6 2.0324 -0.7103 1.2306 14 8 2.7297 -1.6964 1.1193 15 7 1.7068 -0.2498 2.4546 16 6 2.2001 -0.9368 3.6508 17 6 1.7022 -0.2232 4.8812 18 8 1.0044 0.7625 4.7699 19 7 2.0324 -0.6804 6.1053 20 6 1.5799 -0.0309 7.2247 21 1 0.9585 0.8469 7.1255 22 6 1.9199 -0.5025 8.4867 23 7 2.6756 -1.5708 8.6074 24 14 1.3027 0.3820 10.0119 25 1 -0.1823 0.3822 10.0171 26 1 1.8023 -0.3147 11.2243 27 1 1.7979 1.7820 10.0067 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 3.1264 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 3.0560 -2.2379 -2.7396 34 1 3.9711 -3.5916 -4.5800 35 1 2.4418 -0.7878 -7.4125 36 1 1.5159 0.5667 -5.5782 37 1 1.1493 0.5390 2.5436 38 1 1.8373 -1.9647 3.6551 39 1 3.2901 -0.9363 3.6466 40 1 2.5908 -1.4685 6.1944 41 1 2.9126 -1.9003 9.4884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344181119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -125.088981 kcal Electronic energy + Delta-G solvation = -25051.405370 eV Core-core repulsion = 20970.645223 eV Total energy + Delta-G solvation = -4080.760147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92520 -41.20154 -39.98935 -39.80068 -36.27491 -35.70741 -35.31759 -33.37162 -32.29470 -31.61747 -29.57545 -28.26018 -26.58694 -24.61106 -23.83797 -23.64016 -21.39382 -21.05303 -20.06147 -19.01789 -18.66915 -18.27357 -17.40229 -17.38485 -17.01383 -16.86673 -16.63261 -16.47866 -16.09430 -15.89049 -15.61142 -15.35541 -15.03438 -14.69376 -14.62587 -14.38331 -14.10684 -13.97617 -13.78116 -13.53975 -13.51382 -13.27458 -12.92964 -12.89810 -12.47346 -12.46905 -12.29482 -12.14613 -12.13858 -11.56136 -11.28456 -10.92750 -10.58361 -10.55888 -10.22419 -10.21026 -10.08596 -8.51079 -8.37144 -6.01429 -0.06754 0.15434 0.35541 1.29638 1.38072 1.43251 1.52859 1.53864 1.91121 2.05534 2.32516 2.43655 3.12197 3.16162 3.22854 3.43705 3.67068 3.71687 3.75181 3.83574 4.14907 4.18254 4.25075 4.29687 4.39611 4.43274 4.47746 4.58574 4.66108 4.83568 4.84931 4.93461 5.06783 5.09351 5.12619 5.22437 5.26772 5.38187 5.75738 5.91389 6.43588 6.50594 7.03248 7.10557 7.44170 7.94061 8.65374 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.001620 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.463643 B =17280.494236 C =17959.711748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.126 0.874 4 C -0.089 4.089 5 S -0.083 6.083 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.138 4.138 9 C 0.074 3.926 10 F -0.147 7.147 11 C -0.132 4.132 12 C -0.074 4.074 13 C 0.523 3.477 14 O -0.577 6.577 15 N -0.704 5.704 16 C 0.121 3.879 17 C 0.432 3.568 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.338 4.338 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.415 0.585 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.398 0.602 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 0.927 -26.994 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.143 0.857 4 C -0.238 4.238 5 S 0.163 5.837 6 C -0.222 4.222 7 C -0.138 4.138 8 C -0.158 4.158 9 C 0.052 3.948 10 F -0.126 7.126 11 C -0.152 4.152 12 C -0.098 4.098 13 C 0.308 3.692 14 O -0.457 6.457 15 N -0.358 5.358 16 C -0.007 4.007 17 C 0.219 3.781 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.468 4.468 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.254 0.746 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.233 0.767 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.611 1.811 -26.898 27.007 hybrid contribution 0.900 -1.381 1.010 1.933 sum -0.711 0.430 -25.887 25.901 Atomic orbital electron populations 1.21905 0.90625 1.03563 1.04377 1.20989 0.99281 1.01282 0.89156 0.85666 1.23472 1.05063 1.01871 0.93345 1.85278 1.69633 1.32866 0.95941 1.22056 1.02916 0.99015 0.98167 1.21235 0.98255 0.94180 1.00111 1.21244 1.01918 1.01837 0.90834 1.17927 0.99702 0.92465 0.84730 1.91489 1.85429 1.76169 1.59464 1.21336 0.98507 0.93546 1.01791 1.20874 0.99194 1.00434 0.89289 1.20876 0.79399 0.84161 0.84714 1.90685 1.39821 1.27941 1.87280 1.45698 1.53174 1.32595 1.04285 1.20783 1.00343 0.96549 0.83064 1.20436 0.85322 0.87104 0.85223 1.90473 1.43944 1.30008 1.86667 1.41851 1.45521 1.27662 1.04473 1.19710 1.31066 1.11549 0.84440 0.89485 1.26117 0.96305 0.96903 1.01755 1.69671 1.36173 1.23311 1.26424 0.84933 0.78622 0.78124 0.76346 1.19480 1.19731 1.19503 0.91927 0.91044 0.89010 0.88869 0.88733 0.84420 0.83348 0.82029 0.82482 0.74617 0.88772 0.88787 0.76739 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.92 71.98 0.64 -1.73 16 2 C -0.08 -1.57 2.72 -11.54 -0.03 -1.60 16 3 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.09 -1.57 3.12 71.98 0.22 -1.34 16 5 S -0.08 -1.27 20.73 -56.49 -1.17 -2.44 16 6 C -0.11 -1.75 6.11 22.61 0.14 -1.62 16 7 C -0.11 -1.91 9.36 22.41 0.21 -1.70 16 8 C -0.14 -2.23 10.02 22.29 0.22 -2.01 16 9 C 0.07 1.21 7.30 22.38 0.16 1.37 16 10 F -0.15 -2.66 17.26 44.97 0.78 -1.88 16 11 C -0.13 -1.72 10.02 22.30 0.22 -1.50 16 12 C -0.07 -0.99 9.79 22.40 0.22 -0.77 16 13 C 0.52 14.01 7.15 87.66 0.63 14.64 16 14 O -0.58 -18.94 15.92 -3.04 -0.05 -18.99 16 15 N -0.70 -20.80 5.42 -466.79 -2.53 -23.33 16 16 C 0.12 4.13 6.15 85.63 0.53 4.66 16 17 C 0.43 19.15 7.85 87.66 0.69 19.84 16 18 O -0.62 -30.91 15.24 -3.04 -0.05 -30.96 16 19 N -0.56 -27.37 5.29 -306.99 -1.62 -28.99 16 20 C -0.34 -18.27 9.68 84.04 0.81 -17.46 16 21 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.51 5.50 84.92 0.47 -0.05 16 23 N -0.92 -47.94 13.05 21.66 0.28 -47.66 16 24 Si 1.00 41.04 29.55 68.60 2.03 43.07 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.18 7.56 -2.39 -0.02 1.16 16 30 H 0.09 1.21 7.13 -2.39 -0.02 1.19 16 31 H 0.09 1.79 7.55 -2.39 -0.02 1.77 16 32 H 0.09 1.74 7.76 -2.39 -0.02 1.72 16 33 H 0.14 2.23 5.88 -2.91 -0.02 2.22 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.42 12.03 6.86 -92.71 -0.64 11.39 16 38 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.40 18.76 7.90 -92.71 -0.73 18.02 16 41 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -64.32 370.33 2.53 -61.79 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.28 Total: 38.66 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.14 Total: 10.74 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.87 Total: -99.99 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.09 Total: -49.95 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -1.17 Total: -2.44 kcal Total: -64.32 2.53 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344181119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.296 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds