Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 114.00059 * 2 1 4 4 C 1.52996 * 109.47225 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47136 * 64.99679 * 4 3 2 6 6 C 1.35777 * 117.00338 * 179.97438 * 5 4 3 7 7 C 1.38880 * 119.91830 * 0.02562 * 6 5 4 8 8 C 1.37733 * 120.15829 * 179.97438 * 7 6 5 9 9 N 1.48017 * 120.00606 * 179.97438 * 8 7 6 10 10 O 1.31709 * 119.99936 * 353.36843 * 9 8 7 11 11 O 1.31700 * 120.00324 * 173.36987 * 9 8 7 12 12 C 1.39813 * 119.99615 * 0.02562 * 8 7 6 13 13 C 1.47437 * 120.08280 * 180.02562 * 12 8 7 14 14 O 1.21515 * 119.99452 * 303.53471 * 13 12 8 15 15 N 1.34773 * 120.00084 * 123.52768 * 13 12 8 16 16 C 1.33306 * 119.99570 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00597 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.29313 * 119.99944 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99782 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46887 * 90.00031 * 20 18 16 22 22 H 1.48495 * 109.47000 * 209.99823 * 20 18 16 23 23 H 1.48499 * 109.47452 * 330.00134 * 20 18 16 24 24 C 1.39835 * 119.84448 * 359.97438 * 12 8 7 25 25 C 1.38096 * 119.84143 * 359.74428 * 24 12 8 26 26 O 1.35998 * 119.99936 * 180.27191 * 25 24 12 27 27 C 1.42900 * 117.00062 * 0.24072 * 26 25 24 28 28 H 1.08996 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47012 * 300.00395 * 1 2 3 30 30 H 1.08998 * 109.46762 * 60.00125 * 1 2 3 31 31 H 1.09001 * 109.46932 * 59.99416 * 3 2 1 32 32 H 1.08998 * 109.46792 * 300.00332 * 3 2 1 33 33 H 1.08998 * 109.47081 * 184.99964 * 4 3 2 34 34 H 1.09005 * 109.46812 * 304.99863 * 4 3 2 35 35 H 1.08008 * 119.92074 * 359.95028 * 7 6 5 36 36 H 0.96997 * 120.00108 * 0.02562 * 15 13 12 37 37 H 0.97001 * 120.00265 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.08096 * 180.02562 * 24 12 8 39 39 H 1.09003 * 109.47160 * 59.99561 * 27 26 25 40 40 H 1.09002 * 109.47203 * 179.97438 * 27 26 25 41 41 H 1.09006 * 109.47114 * 299.99817 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2200 6 6 5.3019 0.3984 -1.3810 7 6 6.1801 0.7965 -0.3815 8 6 7.5363 0.6149 -0.5393 9 7 8.4693 1.0409 0.5278 10 8 8.0181 1.7102 1.5686 11 8 9.7508 0.7508 0.4368 12 6 8.0317 0.0292 -1.7082 13 6 9.4830 -0.1666 -1.8789 14 8 10.2378 0.7822 -1.7970 15 7 9.9725 -1.3978 -2.1258 16 6 11.2847 -1.5746 -2.2806 17 1 11.9556 -0.7314 -2.2079 18 6 11.8179 -2.9155 -2.5500 19 7 13.0908 -3.0871 -2.6998 20 14 10.6575 -4.3738 -2.6765 21 1 10.2184 -4.5362 -4.0858 22 1 11.3591 -5.6047 -2.2318 23 1 9.4725 -4.1400 -1.8127 24 6 7.1474 -0.3716 -2.7146 25 6 5.7885 -0.1918 -2.5469 26 8 4.9252 -0.5854 -3.5212 27 6 5.4931 -1.1823 -4.6889 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.9785 2.1766 0.0902 34 1 3.8508 0.5686 0.8428 35 1 5.7988 1.2498 0.5216 36 1 9.3700 -2.1551 -2.1914 37 1 13.4431 -3.9730 -2.8781 38 1 7.5260 -0.8249 -3.6188 39 1 6.0451 -2.0789 -4.4068 40 1 4.6972 -1.4496 -5.3840 41 1 6.1703 -0.4739 -5.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355731731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -78.860110 kcal Electronic energy + Delta-G solvation = -29897.310732 eV Core-core repulsion = 25363.429559 eV Total energy + Delta-G solvation = -4533.881173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -40.95026 -39.13406 -38.87330 -37.96462 -37.68621 -36.18510 -34.37698 -33.32536 -32.59654 -31.49278 -30.87242 -29.82752 -27.76461 -26.69142 -26.09840 -24.89114 -23.87793 -22.35033 -21.60996 -20.05379 -19.39821 -18.79439 -17.75712 -17.62024 -17.16362 -16.79696 -16.33954 -16.10730 -16.04046 -15.67734 -15.40851 -15.22766 -15.12867 -14.92549 -14.46170 -14.14105 -13.84163 -13.52189 -13.11897 -12.97555 -12.84588 -12.70082 -12.56266 -12.31802 -11.79133 -11.65441 -11.61251 -11.55448 -11.26630 -11.06554 -11.00235 -10.51378 -10.38077 -10.24422 -10.04813 -9.85650 -9.65406 -9.09820 -8.80991 -8.66593 -8.07476 -7.10426 -3.85595 -0.21521 0.92563 1.57650 1.98375 2.68358 2.73311 2.80575 2.86864 2.97482 3.20303 3.38389 3.55437 3.68876 4.21044 4.44168 4.55670 4.67145 4.73524 4.76869 4.84637 4.90108 5.01033 5.03271 5.03657 5.08806 5.09567 5.20791 5.29339 5.33826 5.35343 5.39755 5.47522 5.86342 6.01052 6.15145 6.65322 6.71433 6.73366 6.80979 7.28150 7.67804 7.75541 7.86440 8.48600 8.89978 9.63840 9.95296 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003452 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.528179 B = 8109.464811 C = 9383.394198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.065 3.935 4 C 0.053 3.947 5 O -0.288 6.288 6 C 0.096 3.904 7 C -0.120 4.120 8 C 0.020 3.980 9 N -0.014 5.014 10 O -0.280 6.280 11 O -0.130 6.130 12 C -0.033 4.033 13 C 0.440 3.560 14 O -0.544 6.544 15 N -0.519 5.519 16 C -0.270 4.270 17 H 0.137 0.863 18 C 0.045 3.955 19 N -0.785 5.785 20 Si 0.885 3.115 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.257 1.257 24 C -0.167 4.167 25 C 0.147 3.853 26 O -0.296 6.296 27 C 0.018 3.982 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.372 0.628 37 H 0.295 0.705 38 H 0.156 0.844 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.122 -0.203 -2.374 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.011 4.011 4 C -0.022 4.022 5 O -0.201 6.201 6 C 0.048 3.952 7 C -0.140 4.140 8 C -0.072 4.072 9 N 0.438 4.562 10 O -0.438 6.438 11 O -0.323 6.323 12 C -0.041 4.041 13 C 0.232 3.768 14 O -0.427 6.427 15 N -0.151 5.151 16 C -0.403 4.403 17 H 0.155 0.845 18 C -0.174 4.174 19 N -0.418 5.418 20 Si 0.708 3.292 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.182 1.182 24 C -0.188 4.188 25 C 0.099 3.901 26 O -0.208 6.208 27 C -0.077 4.077 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.176 0.824 36 H 0.205 0.795 37 H 0.108 0.892 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.154 0.087 -2.712 22.320 hybrid contribution -0.332 -0.794 0.349 0.929 sum -22.486 -0.707 -2.364 22.621 Atomic orbital electron populations 1.22754 0.80883 1.02973 0.99914 1.87989 1.19762 1.27064 1.95404 1.22550 0.91261 0.85805 1.01519 1.22970 0.93996 0.98667 0.86596 1.86181 1.17868 1.77168 1.38895 1.17759 0.83436 1.01426 0.92549 1.20581 0.90650 1.02530 1.00212 1.19570 0.87923 1.10741 0.88974 1.49906 1.03148 1.01074 1.02102 1.96137 1.82396 1.43484 1.21797 1.96382 0.92601 1.58720 1.84616 1.19686 0.96356 0.96518 0.91532 1.16815 0.85657 0.84540 0.89823 1.90710 1.57205 1.39524 1.55308 1.41390 1.08372 1.08276 1.57095 1.21005 0.82958 0.95943 1.40440 0.84550 1.26912 0.96039 0.98296 0.96103 1.68594 1.13378 1.25966 1.33839 0.86535 0.81178 0.81363 0.80146 1.18291 1.18814 1.18150 1.21149 0.90102 1.06461 1.01047 1.18274 0.88434 0.95582 0.87811 1.86201 1.33457 1.74381 1.26788 1.23234 1.00921 0.97828 0.85669 0.89503 0.94095 0.93930 0.90915 0.91915 0.89953 0.90669 0.82370 0.79450 0.89207 0.82672 0.92044 0.87737 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.10 10.67 -40.09 -0.43 -4.53 16 3 C 0.07 0.56 6.32 37.16 0.23 0.79 16 4 C 0.05 0.55 5.12 37.16 0.19 0.74 16 5 O -0.29 -3.95 9.87 -40.11 -0.40 -4.35 16 6 C 0.10 1.44 6.71 -38.89 -0.26 1.18 16 7 C -0.12 -1.96 8.55 -39.53 -0.34 -2.30 16 8 C 0.02 0.41 6.88 -79.54 -0.55 -0.14 16 9 N -0.01 -0.32 4.98 34.16 0.17 -0.15 16 10 O -0.28 -6.54 19.16 -31.57 -0.60 -7.14 16 11 O -0.13 -3.51 15.58 -39.88 -0.62 -4.13 16 12 C -0.03 -0.67 5.63 -104.97 -0.59 -1.26 16 13 C 0.44 10.50 5.65 -12.52 -0.07 10.43 16 14 O -0.54 -15.33 14.24 -18.83 -0.27 -15.60 16 15 N -0.52 -11.74 5.01 -10.69 -0.05 -11.80 16 16 C -0.27 -6.82 10.43 -13.46 -0.14 -6.96 16 17 H 0.14 3.97 7.31 -52.49 -0.38 3.58 16 18 C 0.04 1.04 5.69 -15.16 -0.09 0.95 16 19 N -0.79 -19.03 13.88 56.00 0.78 -18.25 16 20 Si 0.88 16.18 27.86 -169.99 -4.74 11.44 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 H -0.26 -4.48 6.61 56.52 0.37 -4.11 16 24 C -0.17 -2.63 8.76 -39.04 -0.34 -2.97 16 25 C 0.15 2.17 6.69 -39.18 -0.26 1.91 16 26 O -0.30 -3.88 10.28 -34.39 -0.35 -4.23 16 27 C 0.02 0.17 9.81 101.05 0.99 1.16 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.71 7.65 -51.93 -0.40 0.31 16 34 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.16 2.29 5.80 -52.48 -0.30 1.99 16 36 H 0.37 7.26 5.94 -40.82 -0.24 7.02 16 37 H 0.30 6.35 8.26 -40.82 -0.34 6.01 16 38 H 0.16 2.04 6.28 -52.48 -0.33 1.71 16 39 H 0.06 0.50 7.67 -51.93 -0.40 0.11 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -33.96 362.67 -5.71 -39.66 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.55 Total: 8.75 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.11 Total: 4.86 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.89 Total: -30.20 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.67 Total: -39.99 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -4.74 Total: 11.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.96 -5.71 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355731731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.198 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds