Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 114.00059 * 2 1 4 4 C 1.52996 * 109.47225 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47136 * 64.99679 * 4 3 2 6 6 C 1.35777 * 117.00338 * 179.97438 * 5 4 3 7 7 C 1.38880 * 119.91830 * 0.02562 * 6 5 4 8 8 C 1.37733 * 120.15829 * 179.97438 * 7 6 5 9 9 N 1.48017 * 120.00606 * 179.97438 * 8 7 6 10 10 O 1.31709 * 119.99936 * 353.36843 * 9 8 7 11 11 O 1.31700 * 120.00324 * 173.36987 * 9 8 7 12 12 C 1.39813 * 119.99615 * 0.02562 * 8 7 6 13 13 C 1.47437 * 120.08280 * 180.02562 * 12 8 7 14 14 O 1.21515 * 119.99452 * 303.53471 * 13 12 8 15 15 N 1.34773 * 120.00084 * 123.52768 * 13 12 8 16 16 C 1.33306 * 119.99570 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00597 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.29313 * 119.99944 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99782 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46887 * 90.00031 * 20 18 16 22 22 H 1.48495 * 109.47000 * 209.99823 * 20 18 16 23 23 H 1.48499 * 109.47452 * 330.00134 * 20 18 16 24 24 C 1.39835 * 119.84448 * 359.97438 * 12 8 7 25 25 C 1.38096 * 119.84143 * 359.74428 * 24 12 8 26 26 O 1.35998 * 119.99936 * 180.27191 * 25 24 12 27 27 C 1.42900 * 117.00062 * 0.24072 * 26 25 24 28 28 H 1.08996 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47012 * 300.00395 * 1 2 3 30 30 H 1.08998 * 109.46762 * 60.00125 * 1 2 3 31 31 H 1.09001 * 109.46932 * 59.99416 * 3 2 1 32 32 H 1.08998 * 109.46792 * 300.00332 * 3 2 1 33 33 H 1.08998 * 109.47081 * 184.99964 * 4 3 2 34 34 H 1.09005 * 109.46812 * 304.99863 * 4 3 2 35 35 H 1.08008 * 119.92074 * 359.95028 * 7 6 5 36 36 H 0.96997 * 120.00108 * 0.02562 * 15 13 12 37 37 H 0.97001 * 120.00265 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.08096 * 180.02562 * 24 12 8 39 39 H 1.09003 * 109.47160 * 59.99561 * 27 26 25 40 40 H 1.09002 * 109.47203 * 179.97438 * 27 26 25 41 41 H 1.09006 * 109.47114 * 299.99817 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2200 6 6 5.3019 0.3984 -1.3810 7 6 6.1801 0.7965 -0.3815 8 6 7.5363 0.6149 -0.5393 9 7 8.4693 1.0409 0.5278 10 8 8.0181 1.7102 1.5686 11 8 9.7508 0.7508 0.4368 12 6 8.0317 0.0292 -1.7082 13 6 9.4830 -0.1666 -1.8789 14 8 10.2378 0.7822 -1.7970 15 7 9.9725 -1.3978 -2.1258 16 6 11.2847 -1.5746 -2.2806 17 1 11.9556 -0.7314 -2.2079 18 6 11.8179 -2.9155 -2.5500 19 7 13.0908 -3.0871 -2.6998 20 14 10.6575 -4.3738 -2.6765 21 1 10.2184 -4.5362 -4.0858 22 1 11.3591 -5.6047 -2.2318 23 1 9.4725 -4.1400 -1.8127 24 6 7.1474 -0.3716 -2.7146 25 6 5.7885 -0.1918 -2.5469 26 8 4.9252 -0.5854 -3.5212 27 6 5.4931 -1.1823 -4.6889 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.9785 2.1766 0.0902 34 1 3.8508 0.5686 0.8428 35 1 5.7988 1.2498 0.5216 36 1 9.3700 -2.1551 -2.1914 37 1 13.4431 -3.9730 -2.8781 38 1 7.5260 -0.8249 -3.6188 39 1 6.0451 -2.0789 -4.4068 40 1 4.6972 -1.4496 -5.3840 41 1 6.1703 -0.4739 -5.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355731731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -104.311210 kcal Electronic energy + Delta-G solvation = -29898.414375 eV Core-core repulsion = 25363.429559 eV Total energy + Delta-G solvation = -4534.984816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34094 -40.64291 -40.03678 -39.68368 -38.61720 -37.67051 -36.14737 -35.33617 -34.28214 -32.57653 -32.38664 -30.94655 -28.82599 -27.77128 -27.26438 -26.49469 -24.97539 -23.73309 -22.84427 -21.69669 -21.06364 -20.20791 -19.27649 -19.15824 -18.33975 -17.93895 -17.81584 -17.31834 -17.18567 -16.89961 -16.80159 -16.41585 -16.10182 -16.04269 -15.90519 -15.55760 -15.43677 -14.84665 -14.54763 -14.42395 -14.12776 -13.88092 -13.55987 -13.19677 -13.05941 -12.65964 -12.61452 -12.46890 -12.44489 -12.44297 -12.35113 -12.06670 -12.04134 -11.93781 -11.78351 -11.47269 -10.65310 -10.63368 -10.54841 -10.42130 -9.40107 -8.69667 -5.84111 -1.92061 -0.46524 -0.06018 0.14455 1.25502 1.25746 1.39988 1.68207 1.77136 1.88505 2.05506 2.08967 2.56166 2.80304 2.92103 3.16350 3.38567 3.49147 3.59285 3.76065 3.97406 4.03894 4.12874 4.22510 4.32772 4.36923 4.37618 4.47103 4.50188 4.53967 4.59424 4.67997 4.68941 4.77781 4.90444 4.91557 5.11611 5.65824 5.72013 5.87479 6.10250 6.21968 6.22607 6.80105 7.20620 7.91179 8.43418 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003452 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.528179 B = 8109.464811 C = 9383.394198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.063 3.937 4 C 0.037 3.963 5 O -0.289 6.289 6 C 0.118 3.882 7 C -0.106 4.106 8 C -0.001 4.001 9 N -0.012 5.012 10 O -0.188 6.188 11 O -0.222 6.222 12 C -0.032 4.032 13 C 0.444 3.556 14 O -0.602 6.602 15 N -0.518 5.518 16 C -0.360 4.360 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.861 5.861 20 Si 0.959 3.041 21 H -0.233 1.233 22 H -0.261 1.261 23 H -0.242 1.242 24 C -0.157 4.157 25 C 0.178 3.822 26 O -0.293 6.293 27 C 0.000 4.000 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.387 0.613 37 H 0.299 0.701 38 H 0.184 0.816 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.990 0.144 -1.963 30.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.037 4.037 5 O -0.202 6.202 6 C 0.070 3.930 7 C -0.126 4.126 8 C -0.091 4.091 9 N 0.452 4.548 10 O -0.379 6.379 11 O -0.398 6.398 12 C -0.038 4.038 13 C 0.234 3.766 14 O -0.489 6.489 15 N -0.153 5.153 16 C -0.491 4.491 17 H 0.080 0.920 18 C -0.202 4.202 19 N -0.494 5.494 20 Si 0.776 3.224 21 H -0.157 1.157 22 H -0.186 1.186 23 H -0.165 1.165 24 C -0.177 4.177 25 C 0.129 3.871 26 O -0.204 6.204 27 C -0.093 4.093 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.205 0.795 36 H 0.222 0.778 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.842 0.239 -2.544 29.951 hybrid contribution 0.921 -0.212 0.593 1.116 sum -28.920 0.027 -1.951 28.986 Atomic orbital electron populations 1.22909 0.79297 1.03692 1.01067 1.87928 1.21631 1.28404 1.95693 1.22703 0.89861 0.85445 1.03288 1.23447 0.95537 0.99670 0.85036 1.86243 1.16132 1.76925 1.40900 1.17837 0.84301 0.99168 0.91734 1.20819 0.88389 1.01729 1.01682 1.19999 0.88733 1.11936 0.88451 1.50556 1.03775 0.98477 1.02029 1.96086 1.81881 1.38745 1.21229 1.96511 0.93562 1.63503 1.86205 1.19698 0.94828 0.96548 0.92755 1.17456 0.86974 0.84212 0.87951 1.90659 1.59185 1.41558 1.57508 1.40770 1.07326 1.07895 1.59288 1.20027 0.83265 0.95321 1.50465 0.91953 1.27763 0.97772 1.00469 0.94173 1.68711 1.15701 1.26837 1.38179 0.85496 0.78960 0.76458 0.81529 1.15659 1.18555 1.16528 1.21363 0.90051 1.05504 1.00761 1.18380 0.88007 0.92612 0.88075 1.86262 1.33342 1.73501 1.27286 1.23736 1.02758 0.98404 0.84426 0.89164 0.92521 0.93173 0.88002 0.91263 0.87582 0.90152 0.79501 0.77774 0.88885 0.79850 0.90599 0.84559 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.01 10.67 -144.34 -1.54 -8.55 16 3 C 0.06 0.73 6.32 71.98 0.45 1.18 16 4 C 0.04 0.53 5.12 71.98 0.37 0.90 16 5 O -0.29 -6.11 9.87 -70.90 -0.70 -6.81 16 6 C 0.12 2.85 6.71 22.71 0.15 3.00 16 7 C -0.11 -2.90 8.55 22.30 0.19 -2.71 16 8 C 0.00 -0.05 6.88 36.64 0.25 0.21 16 9 N -0.01 -0.54 4.98 -45.84 -0.23 -0.77 16 10 O -0.19 -7.91 19.16 3.50 0.07 -7.84 16 11 O -0.22 -12.63 15.58 11.46 0.18 -12.45 16 12 C -0.03 -1.25 5.63 -20.09 -0.11 -1.36 16 13 C 0.44 22.60 5.65 86.67 0.49 23.09 16 14 O -0.60 -37.34 14.24 19.36 0.28 -37.07 16 15 N -0.52 -25.57 5.01 -306.03 -1.53 -27.10 16 16 C -0.36 -20.89 10.43 86.71 0.90 -19.99 16 17 H 0.06 4.36 7.31 -2.91 -0.02 4.34 16 18 C 0.01 0.49 5.69 87.30 0.50 0.99 16 19 N -0.86 -47.42 13.88 23.26 0.32 -47.10 16 20 Si 0.96 35.03 27.86 68.60 1.91 36.95 16 21 H -0.23 -7.49 7.11 99.48 0.71 -6.78 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.24 -7.99 6.61 99.48 0.66 -7.33 16 24 C -0.16 -4.36 8.76 22.62 0.20 -4.17 16 25 C 0.18 4.30 6.69 22.53 0.15 4.45 16 26 O -0.29 -5.85 10.28 -79.53 -0.82 -6.66 16 27 C 0.00 0.00 9.81 113.37 1.11 1.12 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.07 7.65 -2.39 -0.02 1.06 16 34 H 0.08 1.13 7.65 -2.38 -0.02 1.11 16 35 H 0.19 4.08 5.80 -2.91 -0.02 4.06 16 36 H 0.39 15.72 5.94 -92.71 -0.55 15.17 16 37 H 0.30 14.51 8.26 -92.71 -0.77 13.75 16 38 H 0.18 4.15 6.28 -2.91 -0.02 4.13 16 39 H 0.08 0.80 7.67 -2.39 -0.02 0.79 16 40 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.82 7.65 -2.38 -0.02 0.80 16 Total: -1.00 -87.33 362.67 4.35 -82.98 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.51 Total: 26.20 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.91 Total: 8.22 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.44 Total: -74.97 kcal Atomic # 8 Polarization: -76.84 SS G_CDS: -2.54 Total: -79.37 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 1.91 Total: 36.95 kcal Total: -87.33 4.35 -82.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355731731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.333 kcal (2) G-P(sol) polarization free energy of solvation -87.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds