Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47101 * 240.00224 * 3 2 1 5 5 H 1.48503 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47185 * 119.99741 * 3 2 1 7 7 C 1.38951 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00063 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.34784 * 120.00082 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99652 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99910 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.81156 * 121.03204 * 12 10 9 14 14 C 1.52784 * 109.77668 * 0.25223 * 12 10 9 15 15 C 1.50601 * 110.86141 * 192.98828 * 14 12 10 16 16 C 1.38978 * 117.61351 * 199.68024 * 15 14 12 17 17 C 1.37903 * 120.58714 * 180.38900 * 16 15 14 18 18 C 1.38260 * 119.82427 * 0.05076 * 17 16 15 19 19 C 1.37956 * 119.71922 * 359.80383 * 18 17 16 20 20 C 1.37670 * 122.87073 * 19.75284 * 15 14 12 21 21 C 1.51215 * 122.37690 * 358.94599 * 20 15 14 22 22 N 1.46689 * 109.44555 * 11.50478 * 21 20 15 23 23 C 1.34778 * 121.34535 * 135.55937 * 22 21 20 24 24 O 1.21694 * 119.99809 * 186.26837 * 23 22 21 25 25 C 1.46651 * 120.00482 * 5.99412 * 23 22 21 26 26 C 1.36540 * 125.99257 * 178.33472 * 25 23 22 27 27 C 1.40360 * 106.71162 * 180.02562 * 26 25 23 28 28 C 1.35136 * 107.11673 * 359.97438 * 27 26 25 29 29 O 1.33932 * 108.76116 * 359.73562 * 28 27 26 30 30 H 0.96997 * 119.99583 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99857 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.19902 * 313.34265 * 14 12 10 33 33 H 1.09001 * 109.20423 * 72.67564 * 14 12 10 34 34 H 1.08005 * 119.70562 * 0.37059 * 16 15 14 35 35 H 1.08001 * 120.09077 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.13981 * 179.77711 * 18 17 16 37 37 H 1.07998 * 119.74679 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.62028 * 251.47504 * 21 20 15 39 39 H 1.08999 * 109.47976 * 131.45579 * 21 20 15 40 40 H 1.08004 * 126.64160 * 0.02562 * 26 25 23 41 41 H 1.08002 * 126.44465 * 180.02562 * 27 26 25 42 42 H 1.07997 * 125.62147 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 1.5166 -5.4474 -0.8765 14 6 -0.2598 -4.5918 -0.0036 15 6 -1.0320 -5.8454 0.3131 16 6 -2.3721 -5.8862 -0.0531 17 6 -3.1390 -7.0006 0.2145 18 6 -2.5725 -8.0879 0.8536 19 6 -1.2417 -8.0515 1.2155 20 6 -0.4675 -6.9319 0.9424 21 6 0.9885 -6.9656 1.3493 22 7 1.5621 -5.6214 1.2234 23 6 2.3528 -5.1037 2.1843 24 8 2.7226 -3.9467 2.1101 25 6 2.7628 -5.9329 3.3223 26 6 3.5830 -5.5458 4.3429 27 6 3.7039 -6.6479 5.2037 28 6 2.9611 -7.6467 4.6778 29 8 2.3907 -7.2101 3.5474 30 1 -0.4849 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0016 32 1 -0.4897 -3.8310 0.7424 33 1 -0.5548 -4.2289 -0.9882 34 1 -2.8169 -5.0375 -0.5513 35 1 -4.1795 -7.0239 -0.0739 36 1 -3.1693 -8.9619 1.0689 37 1 -0.7988 -8.9004 1.7151 38 1 1.5332 -7.6543 0.7033 39 1 1.0692 -7.2990 2.3839 40 1 4.0486 -4.5789 4.4643 41 1 4.2813 -6.6895 6.1155 42 1 2.8427 -8.6329 5.1017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363723347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = 3.906636 kcal Electronic energy + Delta-G solvation = -29944.405931 eV Core-core repulsion = 25857.255807 eV Total energy + Delta-G solvation = -4087.150124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69889 -40.52616 -38.93048 -37.43545 -35.80159 -33.84224 -33.29381 -32.83857 -31.33934 -31.04640 -30.13181 -29.04418 -25.91650 -24.98056 -24.26445 -22.70944 -22.23734 -21.69830 -20.60780 -20.08820 -18.92349 -17.91793 -17.39626 -16.63136 -16.53332 -16.34843 -15.63658 -15.38304 -15.05096 -14.82055 -14.50356 -14.40296 -14.00629 -13.82088 -13.61928 -13.19849 -13.09892 -12.95455 -12.91099 -12.74888 -12.69628 -12.28507 -11.94473 -11.83423 -11.45925 -11.35798 -11.07704 -10.96673 -10.94759 -10.32896 -10.05366 -10.04473 -9.68922 -9.15553 -8.82973 -8.66547 -8.55715 -8.41926 -8.18296 -7.78238 -6.28613 -3.65988 1.19907 1.32670 1.37117 2.40248 2.60596 3.09096 3.31786 3.33650 3.39613 3.51993 3.73000 4.17172 4.27202 4.53191 4.64773 4.74383 4.85449 4.92270 4.94756 4.96808 5.12106 5.20753 5.32726 5.37065 5.39638 5.55795 5.57889 5.62488 5.68368 5.74612 5.82054 5.98391 5.99692 6.04302 6.19586 6.35138 6.41684 6.47240 6.51345 6.63011 6.66216 6.87087 6.99646 7.59256 7.69448 8.19071 8.42664 8.77103 9.33378 9.67022 10.21224 10.89914 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.004792 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.415078 B = 5842.036478 C = 8307.741371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.283 4.283 8 H 0.101 0.899 9 N -0.558 5.558 10 C 0.464 3.536 11 O -0.574 6.574 12 C 0.140 3.860 13 H 0.098 0.902 14 C -0.105 4.105 15 C -0.057 4.057 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.114 4.114 20 C -0.096 4.096 21 C 0.144 3.856 22 N -0.600 5.600 23 C 0.587 3.413 24 O -0.444 6.444 25 C -0.060 4.060 26 C -0.127 4.127 27 C -0.220 4.220 28 C -0.028 4.028 29 O -0.163 6.163 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -19.284 5.984 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.412 4.412 8 H 0.119 0.881 9 N -0.196 5.196 10 C 0.249 3.751 11 O -0.457 6.457 12 C 0.034 3.966 13 H 0.116 0.884 14 C -0.143 4.143 15 C -0.057 4.057 16 C -0.135 4.135 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.132 4.132 20 C -0.096 4.096 21 C 0.022 3.978 22 N -0.336 5.336 23 C 0.373 3.627 24 O -0.315 6.315 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.239 4.239 28 C -0.097 4.097 29 O -0.060 6.060 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.906 -18.575 5.746 19.832 hybrid contribution -0.219 0.637 0.284 0.731 sum -4.124 -17.938 6.030 19.369 Atomic orbital electron populations 1.69597 1.05835 1.27960 1.51581 1.25200 0.95615 0.99489 0.97841 0.85942 0.78736 0.80687 0.78981 1.20037 1.21122 1.20023 1.19628 0.93291 0.82081 1.46236 0.88110 1.41835 1.09002 1.04302 1.64496 1.19020 0.87980 0.84036 0.84030 1.90535 1.13580 1.86373 1.55211 1.21299 0.93698 0.94492 0.87142 0.88405 1.21061 0.93653 0.95516 1.04051 1.19554 0.94244 0.94824 0.97095 1.21253 0.93359 0.98540 1.00301 1.21060 0.99711 0.93750 0.99258 1.21000 0.95072 0.98654 0.99716 1.20949 0.94151 0.97455 1.00659 1.19884 0.95542 0.94415 0.99792 1.20900 0.89485 0.83964 1.03458 1.47686 1.49894 1.16825 1.19151 1.16712 0.79442 0.86169 0.80422 1.91160 1.52977 1.14245 1.73090 1.22379 1.04995 0.83357 1.00415 1.21985 0.98825 1.00892 0.93040 1.21817 1.05492 0.93576 1.03028 1.24404 0.97639 1.00400 0.87226 1.84178 1.57434 1.26546 1.37852 0.92058 0.77421 0.88747 0.88624 0.85669 0.86146 0.86173 0.86042 0.90236 0.86991 0.82231 0.82897 0.77759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.37 13.05 55.50 0.72 -24.64 16 2 C 0.02 0.53 5.50 -17.47 -0.10 0.43 16 3 Si 0.93 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.28 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.12 7.16 -52.48 -0.38 2.75 16 9 N -0.56 -14.80 5.10 -10.96 -0.06 -14.86 16 10 C 0.46 11.65 5.00 -10.98 -0.05 11.60 16 11 O -0.57 -16.63 14.38 -19.21 -0.28 -16.91 16 12 C 0.14 2.68 3.33 -68.79 -0.23 2.45 16 13 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 14 C -0.10 -1.74 4.18 -28.04 -0.12 -1.86 16 15 C -0.06 -0.81 5.76 -104.60 -0.60 -1.42 16 16 C -0.12 -1.46 9.59 -39.43 -0.38 -1.84 16 17 C -0.12 -1.29 10.04 -39.70 -0.40 -1.69 16 18 C -0.13 -1.27 10.05 -39.68 -0.40 -1.67 16 19 C -0.11 -1.23 9.62 -39.46 -0.38 -1.60 16 20 C -0.10 -1.26 5.83 -104.35 -0.61 -1.87 16 21 C 0.14 1.95 5.83 -4.84 -0.03 1.92 16 22 N -0.60 -10.72 2.93 -169.45 -0.50 -11.22 16 23 C 0.59 11.91 7.43 -12.86 -0.10 11.82 16 24 O -0.44 -11.25 12.63 -19.56 -0.25 -11.50 16 25 C -0.06 -0.98 6.84 -36.80 -0.25 -1.23 16 26 C -0.13 -1.90 10.62 -39.40 -0.42 -2.32 16 27 C -0.22 -2.42 10.87 -39.89 -0.43 -2.85 16 28 C -0.03 -0.27 12.08 29.63 0.36 0.09 16 29 O -0.16 -2.09 7.20 4.98 0.04 -2.05 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.39 9.82 5.48 -40.82 -0.22 9.59 16 32 H 0.09 1.77 6.85 -51.93 -0.36 1.42 16 33 H 0.10 1.47 8.11 -51.93 -0.42 1.05 16 34 H 0.13 1.44 8.05 -52.48 -0.42 1.01 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 1.40 4.49 -52.42 -0.24 1.17 16 40 H 0.16 2.44 8.06 -52.48 -0.42 2.01 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -36.11 351.47 -8.87 -44.98 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.55 Total: 12.34 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -4.28 Total: 1.55 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.17 Total: -50.72 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.49 Total: -30.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.11 -8.87 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363723347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.890 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds